2010-08-17 06:53:46 +00:00
|
|
|
#!/usr/bin/perl -w
|
|
|
|
|
|
|
|
=head1 NAME
|
|
|
|
|
|
|
|
sem - semaphore for executing shell command lines in parallel
|
|
|
|
|
|
|
|
=head1 SYNOPSIS
|
|
|
|
|
|
|
|
B<sem> [--fg] [--id <id>] [--timeout <secs>] [-j <num>] [--wait] command
|
|
|
|
|
|
|
|
=head1 DESCRIPTION
|
|
|
|
|
|
|
|
GNU B<sem> is an alias for GNU B<parallel --semaphore>.
|
|
|
|
|
|
|
|
It works as a tool for executing shell commands in parallel. GNU
|
|
|
|
B<sem> acts as a counting semaphore. When GNU B<sem> is called with
|
|
|
|
command it will start the command in the background. When I<num>
|
|
|
|
number of commands are running in the background, GNU B<sem> will wait
|
|
|
|
for one of these to complete before starting another command.
|
|
|
|
|
|
|
|
Before looking at the options you may want to check out the examples
|
|
|
|
after the list of options. That will give you an idea of what GNU
|
|
|
|
B<sem> is capable of.
|
|
|
|
|
|
|
|
=head1 OPTIONS
|
|
|
|
|
|
|
|
=over 9
|
|
|
|
|
|
|
|
=item I<command>
|
|
|
|
|
|
|
|
Command to execute. The command may be followed by arguments for the command.
|
|
|
|
|
|
|
|
|
|
|
|
=item B<--count> I<N>
|
|
|
|
|
|
|
|
=item B<-j> I<N>
|
|
|
|
|
|
|
|
Run up to N commands in parallel. Default is 1 thus acting like a
|
|
|
|
mutex.
|
|
|
|
|
|
|
|
|
|
|
|
=item B<--id> I<id>
|
|
|
|
|
|
|
|
=item B<-i> I<id>
|
|
|
|
|
|
|
|
Use B<id> as the name of the semaphore. Default is the name of the
|
|
|
|
controlling tty (output from B<tty>).
|
|
|
|
|
|
|
|
The default normally works as expected when used interactively, but
|
|
|
|
when used in a script I<id> should be set. $$ is often a good value.
|
|
|
|
|
|
|
|
|
|
|
|
=item B<--fg>
|
|
|
|
|
|
|
|
Do not put command in background.
|
|
|
|
|
|
|
|
|
|
|
|
=item B<--timeout> I<secs> (not implemented)
|
|
|
|
|
|
|
|
=item B<-t> I<secs> (not implemented)
|
|
|
|
|
|
|
|
If the semaphore is not released within I<secs> seconds, take it anyway.
|
|
|
|
|
|
|
|
|
|
|
|
=item B<--wait>
|
|
|
|
|
|
|
|
=item B<-w>
|
|
|
|
|
|
|
|
Wait for all commands to complete.
|
|
|
|
|
|
|
|
=back
|
|
|
|
|
|
|
|
=head1 EXAMPLE: Gzipping *.log
|
|
|
|
|
2010-09-05 10:22:08 +00:00
|
|
|
Run one gzip process per CPU core. Block until a CPU core becomes
|
|
|
|
available.
|
|
|
|
|
2010-08-17 06:53:46 +00:00
|
|
|
for i in `ls *.log` ; do
|
|
|
|
echo $i
|
2010-09-05 10:22:08 +00:00
|
|
|
sem -j+0 gzip $i ";" echo done
|
2010-08-17 06:53:46 +00:00
|
|
|
done
|
|
|
|
sem --wait
|
|
|
|
|
|
|
|
|
|
|
|
=head1 BUGS
|
|
|
|
|
|
|
|
Quoting and composed commands are not working.
|
|
|
|
|
|
|
|
|
|
|
|
=head1 REPORTING BUGS
|
|
|
|
|
|
|
|
Report bugs to <bug-parallel@gnu.org>.
|
|
|
|
|
|
|
|
|
|
|
|
=head1 AUTHOR
|
|
|
|
|
|
|
|
Copyright (C) 2010 Ole Tange, http://ole.tange.dk and Free Software
|
|
|
|
Foundation, Inc.
|
|
|
|
|
|
|
|
|
|
|
|
=head1 LICENSE
|
|
|
|
|
|
|
|
Copyright (C) 2010 Free Software Foundation, Inc.
|
|
|
|
|
|
|
|
This program is free software; you can redistribute it and/or modify
|
|
|
|
it under the terms of the GNU General Public License as published by
|
|
|
|
the Free Software Foundation; either version 3 of the License, or
|
|
|
|
at your option any later version.
|
|
|
|
|
|
|
|
This program is distributed in the hope that it will be useful,
|
|
|
|
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
|
|
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
|
|
GNU General Public License for more details.
|
|
|
|
|
|
|
|
You should have received a copy of the GNU General Public License
|
|
|
|
along with this program. If not, see <http://www.gnu.org/licenses/>.
|
|
|
|
|
|
|
|
=head2 Documentation license I
|
|
|
|
|
|
|
|
Permission is granted to copy, distribute and/or modify this documentation
|
|
|
|
under the terms of the GNU Free Documentation License, Version 1.3 or
|
|
|
|
any later version published by the Free Software Foundation; with no
|
|
|
|
Invariant Sections, with no Front-Cover Texts, and with no Back-Cover
|
|
|
|
Texts. A copy of the license is included in the file fdl.txt.
|
|
|
|
|
|
|
|
=head2 Documentation license II
|
|
|
|
|
|
|
|
You are free:
|
|
|
|
|
|
|
|
=over 9
|
|
|
|
|
|
|
|
=item B<to Share>
|
|
|
|
|
|
|
|
to copy, distribute and transmit the work
|
|
|
|
|
|
|
|
=item B<to Remix>
|
|
|
|
|
|
|
|
to adapt the work
|
|
|
|
|
|
|
|
=back
|
|
|
|
|
|
|
|
Under the following conditions:
|
|
|
|
|
|
|
|
=over 9
|
|
|
|
|
|
|
|
=item B<Attribution>
|
|
|
|
|
|
|
|
You must attribute the work in the manner specified by the author or
|
|
|
|
licensor (but not in any way that suggests that they endorse you or
|
|
|
|
your use of the work).
|
|
|
|
|
|
|
|
=item B<Share Alike>
|
|
|
|
|
|
|
|
If you alter, transform, or build upon this work, you may distribute
|
|
|
|
the resulting work only under the same, similar or a compatible
|
|
|
|
license.
|
|
|
|
|
|
|
|
=back
|
|
|
|
|
|
|
|
With the understanding that:
|
|
|
|
|
|
|
|
=over 9
|
|
|
|
|
|
|
|
=item B<Waiver>
|
|
|
|
|
|
|
|
Any of the above conditions can be waived if you get permission from
|
|
|
|
the copyright holder.
|
|
|
|
|
|
|
|
=item B<Public Domain>
|
|
|
|
|
|
|
|
Where the work or any of its elements is in the public domain under
|
|
|
|
applicable law, that status is in no way affected by the license.
|
|
|
|
|
|
|
|
=item B<Other Rights>
|
|
|
|
|
|
|
|
In no way are any of the following rights affected by the license:
|
|
|
|
|
|
|
|
=over 2
|
|
|
|
|
|
|
|
=item *
|
|
|
|
|
|
|
|
Your fair dealing or fair use rights, or other applicable
|
|
|
|
copyright exceptions and limitations;
|
|
|
|
|
|
|
|
=item *
|
|
|
|
|
|
|
|
The author's moral rights;
|
|
|
|
|
|
|
|
=item *
|
|
|
|
|
|
|
|
Rights other persons may have either in the work itself or in
|
|
|
|
how the work is used, such as publicity or privacy rights.
|
|
|
|
|
|
|
|
=back
|
|
|
|
|
|
|
|
=back
|
|
|
|
|
|
|
|
=over 9
|
|
|
|
|
|
|
|
=item B<Notice>
|
|
|
|
|
|
|
|
For any reuse or distribution, you must make clear to others the
|
|
|
|
license terms of this work.
|
|
|
|
|
|
|
|
=back
|
|
|
|
|
|
|
|
A copy of the full license is included in the file as cc-by-sa.txt.
|
|
|
|
|
|
|
|
=head1 DEPENDENCIES
|
|
|
|
|
|
|
|
GNU B<sem> uses Perl, and the Perl modules Getopt::Long,
|
|
|
|
Symbol, Fcntl.
|
|
|
|
|
|
|
|
|
|
|
|
=head1 SEE ALSO
|
|
|
|
|
|
|
|
B<parallel>(1)
|
|
|
|
|
|
|
|
=cut
|
|
|
|
|
|
|
|
use strict;
|
|
|
|
use Symbol qw(gensym);
|
|
|
|
use Getopt::Long;
|
|
|
|
|
|
|
|
Getopt::Long::Configure ("bundling","require_order");
|
|
|
|
GetOptions("debug|D" => \$::opt_D,
|
|
|
|
"id|i=s" => \$::opt_id,
|
|
|
|
"count|j=i" => \$::opt_count,
|
|
|
|
"fg" => \$::opt_fg,
|
|
|
|
"timeout|t=i" => \$::opt_timeout,
|
|
|
|
"version" => \$::opt_version,
|
|
|
|
"wait|w" => \$::opt_wait,
|
|
|
|
) || die_usage();
|
|
|
|
$Global::debug = $::opt_D;
|
|
|
|
$Global::version = 20100814;
|
|
|
|
$Global::progname = 'sem';
|
|
|
|
|
|
|
|
my $count = 1; # Default 1 = mutex
|
|
|
|
if($::opt_count) {
|
|
|
|
$count = $::opt_count + 1;
|
|
|
|
}
|
|
|
|
if($::opt_wait) {
|
|
|
|
$count = 1;
|
|
|
|
}
|
|
|
|
my $id = $::opt_id;
|
|
|
|
my $fg = $::opt_fg || $::opt_wait;
|
|
|
|
$::opt_timeout = $::opt_timeout;
|
|
|
|
if(defined $::opt_version) {
|
|
|
|
version();
|
|
|
|
}
|
|
|
|
|
|
|
|
if(not defined $id) {
|
|
|
|
# $id = getppid();
|
|
|
|
# does not work with:
|
|
|
|
# find . -name '*linux*' -exec sem -j1000 "sleep 3; echo `tty` '{}'" \; ; sem --wait echo done
|
|
|
|
$id = `tty`;
|
|
|
|
}
|
|
|
|
$id = "id-$id";
|
|
|
|
$id=~s/([^-_a-z0-9])/unpack("H*",$1)/ige; # Convert non-word chars to hex
|
|
|
|
my $sem = Semaphore->new($id,$count);
|
|
|
|
$sem->acquire();
|
|
|
|
debug("run");
|
|
|
|
if($fg) {
|
|
|
|
system @ARGV;
|
|
|
|
$sem->release();
|
|
|
|
} else {
|
|
|
|
# If run in the background, the PID will change
|
|
|
|
# therefore release and re-acquire the semaphore
|
|
|
|
$sem->release();
|
|
|
|
if(not fork()) {
|
|
|
|
# child
|
|
|
|
# Get a semaphore for this pid
|
|
|
|
my $child_sem = Semaphore->new($id,$count);
|
|
|
|
$child_sem->acquire();
|
|
|
|
system @ARGV;
|
|
|
|
$child_sem->release();
|
|
|
|
}
|
|
|
|
}
|
|
|
|
|
|
|
|
sub version {
|
|
|
|
# Returns: N/A
|
|
|
|
print join("\n",
|
|
|
|
"GNU $Global::progname $Global::version",
|
|
|
|
"Copyright (C) 2010 Ole Tange and Free Software Foundation, Inc.",
|
|
|
|
"License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>",
|
|
|
|
"This is free software: you are free to change and redistribute it.",
|
|
|
|
"GNU $Global::progname comes with no warranty.",
|
|
|
|
"",
|
|
|
|
"Web site: http://www.gnu.org/software/parallel\n"
|
|
|
|
);
|
|
|
|
}
|
|
|
|
|
|
|
|
sub usage {
|
|
|
|
# Returns: N/A
|
|
|
|
print "Usage:\n";
|
|
|
|
print "$Global::progname [options] [command [arguments]] < list_of_arguments)\n";
|
|
|
|
print "$Global::progname [options] [command [arguments]] ::: arguments\n";
|
|
|
|
print "$Global::progname [options] [command [arguments]] :::: argfile(s)\n";
|
|
|
|
print "\n";
|
|
|
|
print "See 'man $Global::progname' for the options\n";
|
|
|
|
}
|
|
|
|
|
|
|
|
sub die_usage {
|
|
|
|
usage();
|
|
|
|
exit(255);
|
|
|
|
}
|
|
|
|
|
|
|
|
sub debug {
|
|
|
|
# Returns: N/A
|
|
|
|
$Global::debug or return;
|
|
|
|
@_ = grep { defined $_ ? $_ : "" } @_;
|
|
|
|
print map {$_,"\n" } @_;
|
|
|
|
}
|
|
|
|
|
|
|
|
package Semaphore;
|
|
|
|
|
|
|
|
# This package provides a counting semaphore
|
|
|
|
#
|
|
|
|
# If a process dies without releasing the semaphore the next process
|
|
|
|
# that needs that entry will clean up dead semaphores
|
|
|
|
#
|
|
|
|
# The semaphores are stored in ~/.parallel/semaphores/id-<name> Each
|
|
|
|
# file in ~/.parallel/semaphores/id-<name>/ is the process ID of the
|
|
|
|
# process holding the entry. If the process dies, the entry can be
|
|
|
|
# taken by another process.
|
|
|
|
|
|
|
|
use Fcntl qw(:DEFAULT :flock);
|
|
|
|
|
|
|
|
sub new {
|
|
|
|
my $class = shift;
|
|
|
|
my $id = shift;
|
|
|
|
my $count = shift;
|
|
|
|
my $parallel_locks = $ENV{'HOME'}."/.parallel/semaphores";
|
|
|
|
-d $parallel_locks or mkdir $parallel_locks;
|
|
|
|
my $lockdir = "$parallel_locks/$id";
|
|
|
|
my $lockfile = $lockdir.".lock";
|
|
|
|
return bless {
|
|
|
|
'lockfile' => $lockfile,
|
|
|
|
'lockfh' => Symbol::gensym(),
|
|
|
|
'lockdir' => $lockdir,
|
|
|
|
'id' => $id,
|
|
|
|
'idfile' => $lockdir."/".$id,
|
|
|
|
'pid' => $$,
|
|
|
|
'pidfile' => $lockdir."/".$$,
|
|
|
|
'count' => $count
|
|
|
|
}, ref($class) || $class;
|
|
|
|
}
|
|
|
|
|
|
|
|
sub acquire {
|
|
|
|
my $self = shift;
|
|
|
|
while(1) {
|
|
|
|
$self->atomic_link_if_count_less_than() and last;
|
|
|
|
::debug("Remove dead locks");
|
|
|
|
my $lockdir = $self->{'lockdir'};
|
|
|
|
for my $d (<$lockdir/*>) {
|
|
|
|
$d =~ m:$lockdir/([0-9]+):o or next;
|
|
|
|
if(not kill 0, $1) {
|
|
|
|
::debug("Dead: $d");
|
|
|
|
unlink $d;
|
|
|
|
} else {
|
|
|
|
::debug("Alive: $d");
|
|
|
|
}
|
|
|
|
}
|
|
|
|
# try again
|
|
|
|
$self->atomic_link_if_count_less_than() and last;
|
|
|
|
sleep 1;
|
|
|
|
# TODO if timeout: last
|
|
|
|
}
|
|
|
|
::debug("got $self->{'pid'}");
|
|
|
|
}
|
|
|
|
|
|
|
|
sub release {
|
|
|
|
my ($self) = shift;
|
|
|
|
unlink $self->{'pidfile'};
|
|
|
|
if($self->nlinks() == 1) {
|
|
|
|
# This is the last link, so atomic cleanup
|
|
|
|
$self->lock();
|
|
|
|
if($self->nlinks() == 1) {
|
|
|
|
unlink $self->{'idfile'};
|
|
|
|
rmdir $self->{'lockdir'};
|
|
|
|
}
|
|
|
|
$self->unlock();
|
|
|
|
}
|
|
|
|
::debug("released $self->{'pid'}");
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
sub atomic_link_if_count_less_than {
|
|
|
|
# Link $file1 to $file2 if nlinks to $file1 < $count
|
|
|
|
my ($self) = shift;
|
|
|
|
my ($retval) = 0;
|
|
|
|
$self->lock();
|
|
|
|
if($self->nlinks() < $count) {
|
|
|
|
-d $self->{'lockdir'} || mkdir $self->{'lockdir'};
|
|
|
|
if(not -e $self->{'idfile'}) {
|
|
|
|
open (A, ">", $self->{'idfile'}) or die ">$self->{'idfile'}";
|
|
|
|
close A;
|
|
|
|
}
|
|
|
|
$retval = link $self->{'idfile'}, $self->{'pidfile'};
|
|
|
|
}
|
|
|
|
$self->unlock();
|
|
|
|
::debug("atomic $retval");
|
|
|
|
return $retval;
|
|
|
|
}
|
|
|
|
|
|
|
|
sub nlinks {
|
|
|
|
my $self = shift;
|
|
|
|
if(-e $self->{'idfile'}) {
|
|
|
|
return (stat(_))[3];
|
|
|
|
} else {
|
|
|
|
return 0;
|
|
|
|
}
|
|
|
|
}
|
|
|
|
|
|
|
|
sub lock {
|
|
|
|
my ($self) = shift;
|
|
|
|
open $self->{'lockfh'}, ">", $self->{'lockfile'}
|
|
|
|
or die "Can't open semaphore file $self->{'lockfile'}: $!";
|
|
|
|
chmod 0666, $self->{'lockfile'}; # assuming you want it a+rw
|
|
|
|
while(not flock $self->{'lockfh'}, LOCK_EX()|LOCK_NB()) {
|
|
|
|
::debug("Cannot lock $self->{'lockfile'}");
|
|
|
|
# TODO if timeout: last
|
|
|
|
sleep 1;
|
|
|
|
}
|
|
|
|
::debug("locked $self->{'lockfile'}");
|
|
|
|
}
|
|
|
|
|
|
|
|
sub unlock {
|
|
|
|
my $self = shift;
|
|
|
|
unlink $self->{'lockfile'};
|
|
|
|
close $self->{'lockfh'};
|
|
|
|
::debug("unlocked");
|
|
|
|
}
|