diff --git a/doc/FUTURE_IDEAS b/doc/FUTURE_IDEAS index 73f8445c..7f986faf 100644 --- a/doc/FUTURE_IDEAS +++ b/doc/FUTURE_IDEAS @@ -1,13 +1,12 @@ Luk filen ved EOF - lad være med bare at læse videre. -> /tmp/ged; tail -f /tmp/ged| xargs -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 10 >>/tmp/ged; wait - -> /tmp/ged; tail -f /tmp/ged| parallel -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 10 >>/tmp/ged; wait +> /tmp/ged; tail -f /tmp/ged| xargs -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 4 >>/tmp/ged; wait +> /tmp/ged; tail -f /tmp/ged| parallel -n1 -E eof & sleep 1; echo echo a >>/tmp/ged; echo eof >>/tmp/ged; seq 4 >>/tmp/ged; wait Fhqwhgads som 20120122 pga 10 års jubliæum. ---timeout auto: If a jobs takes > 3*average runtime then kill it. Only after job 3. +--timeout auto: If a jobs takes > 3*moving average runtime then kill it. Only after job 3. niceload seeks last column: @@ -26,6 +25,8 @@ cat <<'_EOF' | parallel -v echo awk -v FS="\",\"" '{print $1, $3, $4, $5, $9, $14}' | grep -v "#" | sed -e '1d' -e 's/\"//g' -e 's/\/\/\//\t/g' | cut -f1-6,11 | sed -e 's/\/\//\t/g' -e 's/ /\t/g _EOF +\'-tricket +ls *bed | parallel -j 10 intersectBed -a good-genes.gff -b {} -c \| awk \''BEGIN{OFS="\t\";} {print $1,$9,$4,$5,$7,$10}'\' > test.txt FN="two spaces" echo 1 | parallel -q echo {} "$FN" diff --git a/doc/release_new_version b/doc/release_new_version index 5f159426..aeb94996 100644 --- a/doc/release_new_version +++ b/doc/release_new_version @@ -178,9 +178,24 @@ available for download at: http://ftp.gnu.org/gnu/parallel/ New in this release: +* GNU Parallel is accepted for Ubuntu Quantal. + http://packages.ubuntu.com/quantal/parallel + +* GNU Parallel, where have you been all my life? + http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html + +* Reference-free ddRADseq analysis tools uses GNU Parallel. + https://github.com/brantp/rtd#readme + * When bash just isn’t quick enough. https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/ +* Using GNU Parallel to Package Multiple Jobs in a Single PBS Job. + http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html + +* GNU Parallel Notes. + http://xed.ch/help/parallel.html + * Bug fixes and man page updates. diff --git a/packager/0install/parallel.xml b/packager/0install/parallel.xml index af3cfa3e..787ec6d5 100644 --- a/packager/0install/parallel.xml +++ b/packager/0install/parallel.xml @@ -29,7 +29,9 @@ xargs or cat | sh. - + + + @@ -133,7 +135,7 @@ xargs or cat | sh.