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Released as 20160922 ('Christiania')

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Ole Tange 2016-09-23 01:15:11 +02:00
parent 74e35933f4
commit 0f8d12839f
8 changed files with 60 additions and 22 deletions
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35
NEWS
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@ -1,3 +1,38 @@
20160922
* parcat - cat files or fifos in parallel
* GNU Parallel was cited in: Velocity: A Netflow Based Optimized
Geo-IP Lookup Tool
https://mospace.umsystem.edu/xmlui/bitstream/handle/10355/50842/Thesis_2016_Pakhare.pdf?sequence=1&isAllowed=y
* GNU Parallel was cited in: Viral deep sequencing needs an adaptive
approach: IRMA, the iterative refinement meta-assembler
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/
* GNU Parallel is used in Gene Set Omic Analysis:
https://bitbucket.org/srp33/gsoa
* Using GNU Parallel and ImageMagick for Conversions
https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
* Training in GNU Parallel
http://www.cism.ucl.ac.be/Services/Formations/parcomp.pdf
* Chown Ceph OSD data directory using GNU Parallel
http://blog.widodh.nl/2016/08/chown-ceph-osd-data-directory-using-gnu-parallel/
* FastGBS uses GNU Parallel https://bitbucket.org/jerlar73/fastgbs
* dDocent: A guide to ddRAD sequencing
https://ddocent.wordpress.com/ddocent-pipeline-user-guide/
* SOFTWARE GNU Parallel
http://msi-riss.readthedocs.io/en/latest/software/gnu-parallel.html
* Bug fixes and man page updates.
20160822
* --tmuxpane opens jobs in panes in tmux. Useful if you want to

12
README
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@ -40,9 +40,9 @@ document.
Full installation of GNU Parallel is as simple as:
wget http://ftpmirror.gnu.org/parallel/parallel-20160822.tar.bz2
bzip2 -dc parallel-20160822.tar.bz2 | tar xvf -
cd parallel-20160822
wget http://ftpmirror.gnu.org/parallel/parallel-20160922.tar.bz2
bzip2 -dc parallel-20160922.tar.bz2 | tar xvf -
cd parallel-20160922
./configure && make && sudo make install
@ -51,9 +51,9 @@ Full installation of GNU Parallel is as simple as:
If you are not root you can add ~/bin to your path and install in
~/bin and ~/share:
wget http://ftpmirror.gnu.org/parallel/parallel-20160822.tar.bz2
bzip2 -dc parallel-20160822.tar.bz2 | tar xvf -
cd parallel-20160822
wget http://ftpmirror.gnu.org/parallel/parallel-20160922.tar.bz2
bzip2 -dc parallel-20160922.tar.bz2 | tar xvf -
cd parallel-20160922
./configure --prefix=$HOME && make && make install
Or if your system lacks 'make' you can simply copy src/parallel

20
configure vendored
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@ -1,6 +1,6 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for parallel 20160822.
# Generated by GNU Autoconf 2.69 for parallel 20160922.
#
# Report bugs to <bug-parallel@gnu.org>.
#
@ -579,8 +579,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='parallel'
PACKAGE_TARNAME='parallel'
PACKAGE_VERSION='20160822'
PACKAGE_STRING='parallel 20160822'
PACKAGE_VERSION='20160922'
PACKAGE_STRING='parallel 20160922'
PACKAGE_BUGREPORT='bug-parallel@gnu.org'
PACKAGE_URL=''
@ -1214,7 +1214,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
\`configure' configures parallel 20160822 to adapt to many kinds of systems.
\`configure' configures parallel 20160922 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@ -1281,7 +1281,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
short | recursive ) echo "Configuration of parallel 20160822:";;
short | recursive ) echo "Configuration of parallel 20160922:";;
esac
cat <<\_ACEOF
@ -1357,7 +1357,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
parallel configure 20160822
parallel configure 20160922
generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc.
@ -1374,7 +1374,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by parallel $as_me 20160822, which was
It was created by parallel $as_me 20160922, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
@ -2237,7 +2237,7 @@ fi
# Define the identity of the package.
PACKAGE='parallel'
VERSION='20160822'
VERSION='20160922'
cat >>confdefs.h <<_ACEOF
@ -2880,7 +2880,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by parallel $as_me 20160822, which was
This file was extended by parallel $as_me 20160922, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
@ -2942,7 +2942,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
parallel config.status 20160822
parallel config.status 20160922
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"

2
configure.ac
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@ -1,4 +1,4 @@
AC_INIT([parallel], [20160822], [bug-parallel@gnu.org])
AC_INIT([parallel], [20160922], [bug-parallel@gnu.org])
AM_INIT_AUTOMAKE([-Wall -Werror foreign])
AC_CONFIG_HEADERS([config.h])
AC_CONFIG_FILES([

7
packager/obs/home:tange/parallel/parallel.spec
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@ -1,6 +1,6 @@
Summary: Shell tool for executing jobs in parallel
Name: parallel
Version: 20160822
Version: 20160922
Release: 1.1
License: GPL
Group: Productivity/File utilities
@ -62,6 +62,7 @@ rm $RPM_BUILD_ROOT%{_docdir}/parallel_design.html
rm $RPM_BUILD_ROOT%{_docdir}/niceload.html
rm $RPM_BUILD_ROOT%{_docdir}/sem.html
rm $RPM_BUILD_ROOT%{_docdir}/sql.html
rm $RPM_BUILD_ROOT%{_docdir}/parcat.html
rm $RPM_BUILD_ROOT%{_docdir}/parallel.texi
rm $RPM_BUILD_ROOT%{_docdir}/env_parallel.texi
rm $RPM_BUILD_ROOT%{_docdir}/parallel_tutorial.texi
@ -69,6 +70,7 @@ rm $RPM_BUILD_ROOT%{_docdir}/parallel_design.texi
rm $RPM_BUILD_ROOT%{_docdir}/niceload.texi
rm $RPM_BUILD_ROOT%{_docdir}/sem.texi
rm $RPM_BUILD_ROOT%{_docdir}/sql.texi
rm $RPM_BUILD_ROOT%{_docdir}/parcat.texi
rm $RPM_BUILD_ROOT%{_docdir}/parallel.pdf
rm $RPM_BUILD_ROOT%{_docdir}/env_parallel.pdf
rm $RPM_BUILD_ROOT%{_docdir}/parallel_tutorial.pdf
@ -76,6 +78,7 @@ rm $RPM_BUILD_ROOT%{_docdir}/parallel_design.pdf
rm $RPM_BUILD_ROOT%{_docdir}/niceload.pdf
rm $RPM_BUILD_ROOT%{_docdir}/sem.pdf
rm $RPM_BUILD_ROOT%{_docdir}/sql.pdf
rm $RPM_BUILD_ROOT%{_docdir}/parcat.pdf
%clean
rm -rf $RPM_BUILD_ROOT
@ -85,7 +88,7 @@ rm -rf $RPM_BUILD_ROOT
/usr/bin/*
/usr/share/man/man1/*
/usr/share/man/man7/*
%doc README NEWS src/parallel.html src/env_parallel.html src/parallel_tutorial.html src/parallel_design.html src/sem.html src/sql.html src/niceload.html src/parallel.texi src/env_parallel.texi src/parallel_tutorial.texi src/parallel_design.texi src/niceload.texi src/sem.texi src/sql.texi src/parallel.pdf src/env_parallel.pdf src/parallel_tutorial.pdf src/parallel_design.pdf src/niceload.pdf src/sem.pdf src/sql.pdf
%doc README NEWS src/parallel.html src/env_parallel.html src/parallel_tutorial.html src/parallel_design.html src/sem.html src/sql.html src/parcat.html src/niceload.html src/parallel.texi src/env_parallel.texi src/parallel_tutorial.texi src/parallel_design.texi src/niceload.texi src/sem.texi src/sql.texi src/parcat.texi src/parallel.pdf src/env_parallel.pdf src/parallel_tutorial.pdf src/parallel_design.pdf src/niceload.pdf src/sem.pdf src/sql.pdf src/parcat.pdf
%changelog
* Sat Jan 22 2011 Ole Tange

2
src/niceload
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@ -24,7 +24,7 @@
use strict;
use Getopt::Long;
$Global::progname="niceload";
$Global::version = 20160823;
$Global::version = 20160922;
Getopt::Long::Configure("bundling","require_order");
get_options_from_array(\@ARGV) || die_usage();
if($opt::version) {

2
src/parallel
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@ -1210,7 +1210,7 @@ sub check_invalid_option_combinations {
sub init_globals {
# Defaults:
$Global::version = 20160824;
$Global::version = 20160922;
$Global::progname = 'parallel';
$Global::infinity = 2**31;
$Global::debug = 0;

2
src/sql
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@ -566,7 +566,7 @@ $Global::Initfile && unlink $Global::Initfile;
exit ($err);
sub parse_options {
$Global::version = 20160823;
$Global::version = 20160922;
$Global::progname = 'sql';
# This must be done first as this may exec myself