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Released as 20150722 ('Pluto')

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This commit is contained in:
Ole Tange 2015-07-22 09:26:18 +02:00
parent 68d3abbbab
commit 147c24aeda
10 changed files with 83 additions and 36 deletions
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51
NEWS
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@ -1,3 +1,54 @@
20150722
* If a record fits in a block, --block only reads upto the size of
--block. If not: --block reads a full --block more.
* Due to widely spread distributions still using --tollef even after a
year of being retired following a year of being obsolete, --tollef
now gives an error unless used with --gnu.
* --nice now uses a perl wrapper instead of the nice command.
* Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months
after release.
* A parser for GNU Parallel --joblog files:
https://github.com/harryjubb/joblog
* GNU Parallel was cited in: Dynamical formation & scattering of
hierarchical triples: Cross sections, Kozai-Lidov oscillations, and
collisions http://arxiv.org/pdf/1507.03593.pdf
* GNU Parallel was cited in: A Fast Compiler for NetKAT
http://arxiv.org/pdf/1506.06378.pdf
* GNU Parallel was cited in: Flexible Modeling of Epidemics with an
Empirical Bayes Framework
http://www.stat.cmu.edu/~ryantibs/papers/empbayes.pdf
* GNU Parallel was cited in: Decomposing Time-Lapse Paintings into
Layers
http://cs.gmu.edu/~ygingold/timemap/Decomposing%20Time-Lapse%20Paintings%20into%20Layers%20(Tan%20et%20al%202015%20SIGGRAPH)%20600dpi.pdf
* GNU Parallel was used in: Somatic mutation calling from the matched
tumor-normal exome-sequencing
http://fafner.meb.ki.se/biostatwiki/somac/
* Parallel Processing from the Command Line
https://www.perpetual-beta.org/weblog/parallel-processing-from-the-command-line.html
* Using GNU Parallel to speed up network operations
http://vielmetti.typepad.com/vacuum/2015/06/using-gnu-parallel-to-speed-up-network-operations.html
* Crawl faster with "parallel" - but how fast?
http://andreas-wpv.blogspot.com/2015/07/crawl-faster-with-parallel-but-how-fast.html
* Simultaneously benchmark many URLs with ApacheBench and GNU parallel
https://www.simonholywell.com/post/2015/06/parallel-benchmark-many-urls-with-apachebench/
* Bug fixes and man page updates.
20150622 20150622
* --halt has been rewritten completely. You can now combine * --halt has been rewritten completely. You can now combine

12
README
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@ -40,9 +40,9 @@ document.
Full installation of GNU Parallel is as simple as: Full installation of GNU Parallel is as simple as:
wget http://ftpmirror.gnu.org/parallel/parallel-20150622.tar.bz2 wget http://ftpmirror.gnu.org/parallel/parallel-20150722.tar.bz2
bzip2 -dc parallel-20150622.tar.bz2 | tar xvf - bzip2 -dc parallel-20150722.tar.bz2 | tar xvf -
cd parallel-20150622 cd parallel-20150722
./configure && make && sudo make install ./configure && make && sudo make install
@ -51,9 +51,9 @@ Full installation of GNU Parallel is as simple as:
If you are not root you can add ~/bin to your path and install in If you are not root you can add ~/bin to your path and install in
~/bin and ~/share: ~/bin and ~/share:
wget http://ftpmirror.gnu.org/parallel/parallel-20150622.tar.bz2 wget http://ftpmirror.gnu.org/parallel/parallel-20150722.tar.bz2
bzip2 -dc parallel-20150622.tar.bz2 | tar xvf - bzip2 -dc parallel-20150722.tar.bz2 | tar xvf -
cd parallel-20150622 cd parallel-20150722
./configure --prefix=$HOME && make && make install ./configure --prefix=$HOME && make && make install
Or if your system lacks 'make' you can simply copy src/parallel Or if your system lacks 'make' you can simply copy src/parallel

20
configure vendored
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@ -1,6 +1,6 @@
#! /bin/sh #! /bin/sh
# Guess values for system-dependent variables and create Makefiles. # Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for parallel 20150622. # Generated by GNU Autoconf 2.69 for parallel 20150722.
# #
# Report bugs to <bug-parallel@gnu.org>. # Report bugs to <bug-parallel@gnu.org>.
# #
@ -579,8 +579,8 @@ MAKEFLAGS=
# Identity of this package. # Identity of this package.
PACKAGE_NAME='parallel' PACKAGE_NAME='parallel'
PACKAGE_TARNAME='parallel' PACKAGE_TARNAME='parallel'
PACKAGE_VERSION='20150622' PACKAGE_VERSION='20150722'
PACKAGE_STRING='parallel 20150622' PACKAGE_STRING='parallel 20150722'
PACKAGE_BUGREPORT='bug-parallel@gnu.org' PACKAGE_BUGREPORT='bug-parallel@gnu.org'
PACKAGE_URL='' PACKAGE_URL=''
@ -1203,7 +1203,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing. # Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh. # This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF cat <<_ACEOF
\`configure' configures parallel 20150622 to adapt to many kinds of systems. \`configure' configures parallel 20150722 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]... Usage: $0 [OPTION]... [VAR=VALUE]...
@ -1269,7 +1269,7 @@ fi
if test -n "$ac_init_help"; then if test -n "$ac_init_help"; then
case $ac_init_help in case $ac_init_help in
short | recursive ) echo "Configuration of parallel 20150622:";; short | recursive ) echo "Configuration of parallel 20150722:";;
esac esac
cat <<\_ACEOF cat <<\_ACEOF
@ -1345,7 +1345,7 @@ fi
test -n "$ac_init_help" && exit $ac_status test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then if $ac_init_version; then
cat <<\_ACEOF cat <<\_ACEOF
parallel configure 20150622 parallel configure 20150722
generated by GNU Autoconf 2.69 generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc. Copyright (C) 2012 Free Software Foundation, Inc.
@ -1362,7 +1362,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake. running configure, to aid debugging if configure makes a mistake.
It was created by parallel $as_me 20150622, which was It was created by parallel $as_me 20150722, which was
generated by GNU Autoconf 2.69. Invocation command line was generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@ $ $0 $@
@ -2225,7 +2225,7 @@ fi
# Define the identity of the package. # Define the identity of the package.
PACKAGE='parallel' PACKAGE='parallel'
VERSION='20150622' VERSION='20150722'
cat >>confdefs.h <<_ACEOF cat >>confdefs.h <<_ACEOF
@ -2867,7 +2867,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their # report actual input values of CONFIG_FILES etc. instead of their
# values after options handling. # values after options handling.
ac_log=" ac_log="
This file was extended by parallel $as_me 20150622, which was This file was extended by parallel $as_me 20150722, which was
generated by GNU Autoconf 2.69. Invocation command line was generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES CONFIG_FILES = $CONFIG_FILES
@ -2929,7 +2929,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\ ac_cs_version="\\
parallel config.status 20150622 parallel config.status 20150722
configured by $0, generated by GNU Autoconf 2.69, configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\" with options \\"\$ac_cs_config\\"

2
configure.ac
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@ -1,4 +1,4 @@
AC_INIT([parallel], [20150622], [bug-parallel@gnu.org]) AC_INIT([parallel], [20150722], [bug-parallel@gnu.org])
AM_INIT_AUTOMAKE([-Wall -Werror foreign]) AM_INIT_AUTOMAKE([-Wall -Werror foreign])
AC_CONFIG_HEADERS([config.h]) AC_CONFIG_HEADERS([config.h])
AC_CONFIG_FILES([ AC_CONFIG_FILES([

16
doc/release_new_version
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@ -209,9 +209,9 @@ cc:Tim Cuthbertson <tim3d.junk@gmail.com>,
Ryoichiro Suzuki <ryoichiro.suzuki@gmail.com>, Ryoichiro Suzuki <ryoichiro.suzuki@gmail.com>,
Jesse Alama <jesse.alama@gmail.com> Jesse Alama <jesse.alama@gmail.com>
Subject: GNU Parallel 20150722 ('Davao') released [stable] Subject: GNU Parallel 20150722 ('Pluto') released [stable]
GNU Parallel 20150722 ('Davao') [stable] has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/ GNU Parallel 20150722 ('Pluto') [stable] has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/
No new functionality was introduced so this is a good candidate for a stable release. No new functionality was introduced so this is a good candidate for a stable release.
@ -224,20 +224,16 @@ Haiku of the month:
New in this release: New in this release:
* If a record fits in a block, --block only reads upto the size of --block. If not: --block reads a full --block more.
* Due to widely spread distributions still using --tollef even after a year of being retired following a year of being obsolete, --tollef now gives an error unless used with --gnu. * Due to widely spread distributions still using --tollef even after a year of being retired following a year of being obsolete, --tollef now gives an error unless used with --gnu.
* --nice now uses a perl wrapper instead of the nice command.
* Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months after release. * Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months after release.
* A parser for GNU Parallel --joblog files: https://github.com/harryjubb/joblog * A parser for GNU Parallel --joblog files: https://github.com/harryjubb/joblog
* <<Har angiveligt submittet ny version - afventer opdatering>> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345
* <<Afventer updateret publisering>> GNU Parallel was used in: Large Scale Author Name Disambiguation in Digital Libraries http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7004487&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7004487
* <<kontaktet 2015-06-22 Afventer svar fra journal>> GNU Parallel was used (unfortunately with wrong citation) in: TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics http://vruehle.de/publications/2015c.pdf
* << Update forventet juni Rachel har lige svaret >> GNU Parallel was used in: SISRS: Site Identification from Short Read Sequences https://github.com/rachelss/SISRS/
* GNU Parallel was cited in: Dynamical formation & scattering of hierarchical triples: Cross sections, Kozai-Lidov oscillations, and collisions http://arxiv.org/pdf/1507.03593.pdf * GNU Parallel was cited in: Dynamical formation & scattering of hierarchical triples: Cross sections, Kozai-Lidov oscillations, and collisions http://arxiv.org/pdf/1507.03593.pdf
* GNU Parallel was cited in: A Fast Compiler for NetKAT http://arxiv.org/pdf/1506.06378.pdf * GNU Parallel was cited in: A Fast Compiler for NetKAT http://arxiv.org/pdf/1506.06378.pdf

2
packager/obs/home:tange/parallel/parallel.spec
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@ -1,6 +1,6 @@
Summary: Shell tool for executing jobs in parallel Summary: Shell tool for executing jobs in parallel
Name: parallel Name: parallel
Version: 20150622 Version: 20150722
Release: 1 Release: 1
License: GPL License: GPL
Group: Productivity/File utilities Group: Productivity/File utilities

2
src/niceload
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@ -24,7 +24,7 @@
use strict; use strict;
use Getopt::Long; use Getopt::Long;
$Global::progname="niceload"; $Global::progname="niceload";
$Global::version = 20150622; $Global::version = 20150722;
Getopt::Long::Configure("bundling","require_order"); Getopt::Long::Configure("bundling","require_order");
get_options_from_array(\@ARGV) || die_usage(); get_options_from_array(\@ARGV) || die_usage();
if($opt::version) { if($opt::version) {

2
src/parallel
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@ -1089,7 +1089,7 @@ sub parse_options {
sub init_globals { sub init_globals {
# Defaults: # Defaults:
$Global::version = 20150719; $Global::version = 20150722;
$Global::progname = 'parallel'; $Global::progname = 'parallel';
$Global::infinity = 2**31; $Global::infinity = 2**31;
$Global::debug = 0; $Global::debug = 0;

10
src/parallel.pod
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@ -484,9 +484,9 @@ harder to finance development. However, if you pay 10000 EUR, you
should feel free to use B<--will-cite>. should feel free to use B<--will-cite>.
=item B<--block> I<size> =item B<--block> I<size> (alpha testing)
=item B<--block-size> I<size> =item B<--block-size> I<size> (alpha testing)
Size of block in bytes to read at a time. The I<size> can be postfixed Size of block in bytes to read at a time. The I<size> can be postfixed
with K, M, G, T, P, k, m, g, t, or p which would multiply the size with K, M, G, T, P, k, m, g, t, or p which would multiply the size
@ -1139,9 +1139,9 @@ of each job is saved in a file and the filename is then printed.
See also: B<--results> See also: B<--results>
=item B<--pipe> =item B<--pipe> (alpha testing)
=item B<--spreadstdin> =item B<--spreadstdin> (alpha testing)
Spread input to jobs on stdin (standard input). Read a block of data Spread input to jobs on stdin (standard input). Read a block of data
from stdin (standard input) and give one block of data as input to one from stdin (standard input) and give one block of data as input to one
@ -1284,7 +1284,7 @@ Overrides an earlier B<--keep-order> (e.g. if set in
B<~/.parallel/config>). B<~/.parallel/config>).
=item B<--nice> I<niceness> =item B<--nice> I<niceness> (alpha testing)
Run the command at this niceness. For simple commands you can just add Run the command at this niceness. For simple commands you can just add
B<nice> in front of the command. But if the command consists of more B<nice> in front of the command. But if the command consists of more

2
src/sql
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@ -566,7 +566,7 @@ $Global::Initfile && unlink $Global::Initfile;
exit ($err); exit ($err);
sub parse_options { sub parse_options {
$Global::version = 20150622; $Global::version = 20150722;
$Global::progname = 'sql'; $Global::progname = 'sql';
# This must be done first as this may exec myself # This must be done first as this may exec myself