mirror of
https://git.savannah.gnu.org/git/parallel.git
synced 2024-11-21 21:47:54 +00:00
--progress implemented.
Fixed bug if transfered file contains :.
This commit is contained in:
Ole Tange
parent
847e972912
commit
167332902b
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@ -1,3 +1,26 @@
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--progress
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Fixed bug if transfered file contains :
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* 100% options complete with xargs. All options for xargs can now
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be used in GNU Parallel - even the more exotic.
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* --basefile for transfering basedata. When running jobs on remote
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computers --basefile will transfer files before the first jobs is
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run. It can be used to transfer data that remains the same for each
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job such as scripts or lookup tables.
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* --progress shows progress. To see how many jobs is running on each
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server use --progress. It can be turned on even after GNU Parallel
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is started.
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* --halt-on-error stops if an error occurs. GNU Parallel will default
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to run all jobs - even if some of them fail. With --halt-on-error
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GNU Parallel can ignore errors, wait for the currently running jobs
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to finish, or stop immediately when an error occurs.
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* New video showing the new options.
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=head1 YouTube video
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GNU Parallel is a tool with lots of uses in shell. Every time you use
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@ -100,10 +123,7 @@ En ssh med 20% loss og 900 ms delay, så kan login nås på 15 sek.
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Test if -0 works on filenames ending in '\n'
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monitor to see which jobs are currently running
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http://code.google.com/p/ppss/
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If there are nomore jobs (STDIN is closed) then make sure to
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If there are nomore jobs (STDIN is eof) then make sure to
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distribute the arguments evenly if running -X.
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=head1 options
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@ -67,6 +67,8 @@ http://freshmeat.net/projects/parallel/releases/new
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== Send announce ==
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Newsgroups: comp.unix.shell,comp.unix.admin
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<<<<<
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to:parallel@gnu.org, bug-parallel@gnu.org, info-gnu@gnu.org, bug-directory@gnu.org
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@ -98,7 +100,9 @@ GNU Parallel makes sure output from the commands is the same output as
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you would get had you run the commands sequentially. This makes it
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possible to use output from GNU Parallel as input for other programs.
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You can find more about GNU Parallel at:
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http://www.gnu.org/software/parallel/
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Watch the intro video on http://www.youtube.com/watch?v=LlXDtd_pRaY
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>>>>>
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181
src/parallel
181
src/parallel
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@ -309,6 +309,21 @@ run remote and are very fast to run. This is disabled for sshlogins
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that specify their own ssh command.
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=item B<--progress>
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Show progress of computations. List the computers involved in the task
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with number of CPU cores detected and the max number of jobs to
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run. After that show progress for each computer: number of running
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jobs, number of completed jobs, and percentage of all jobs done by
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this computer. The percentage will only be available after all jobs
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have been scheduled as GNU B<parallel> only read the next job when
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ready to schedule it - this is to avoid wasting time and memory by
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reading everything at startup.
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By sending GNU B<parallel> SIGUSR2 you can toggle turning on/off
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B<--progress> on a running GNU B<parallel> process.
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=item B<--max-args>=I<max-args>
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=item B<-n> I<max-args>
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@ -1225,6 +1240,9 @@ abnormally and running remote (B<--cleanup> may not complete if
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stopped abnormally). The example B<Parallel grep> would require extra
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postprocessing if written using B<ppss>.
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For remote systems PPSS requires 3 steps: config, deploy, and
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start. GNU B<parallel> only requires one step.
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=head3 EXAMPLES FROM ppss MANUAL
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Here are the examples from B<ppss>'s manual page with the equivalent
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@ -1641,6 +1659,7 @@ sub parse_options {
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"cleanup" => \$::opt_cleanup,
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"basefile|B=s" => \@::opt_basefile,
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"halt-on-error|H=s" => \$::opt_halt_on_error,
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"progress" => \$::opt_progress,
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# xargs-compatibility - implemented, man, unittest
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"max-procs|P=s" => \$::opt_P,
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"delimiter|d=s" => \$::opt_d,
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@ -2112,6 +2131,7 @@ sub simultaneous_sshlogin {
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my $wanted_processes = shift;
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my ($sshcmd,$serverlogin) = sshcommand_of_sshlogin($sshlogin);
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my $cmd = "$sshcmd $serverlogin echo simultaneouslogin 2>&1 &"x$wanted_processes;
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debug("Trying $wanted_processes logins at $serverlogin");
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open (SIMUL, "($cmd)|grep simultaneouslogin | wc -l|") or die;
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my $ssh_limit = <SIMUL>;
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close SIMUL;
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@ -2371,20 +2391,27 @@ sub min {
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# $Global::running{$pid}{sshlogin} = server to run on
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# $Global::running{$pid}{'exitstatus'} = exit status
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# $Global::host{$sshlogin}{'no_of_running'} = number of currently running jobs
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# $Global::host{$sshlogin}{'completed'} = number of completed jobs
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# $Global::host{$sshlogin}{'ncpus'} = number of CPUs (or CPU cores)
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# $Global::host{$sshlogin}{'maxlength'} = max line length (currently buggy for remote)
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# $Global::host{$sshlogin}{'max_no_of_running'} = number of currently running jobs
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# $Global::host{$sshlogin}{'max_no_of_running'} = max parallel running jobs
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# $Global::host{$sshlogin}{'sshcmd'} = command to use as ssh
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# $Global::host{$sshlogin}{'serverlogin'} = username@hostname
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# $Global::running_jobs = total number of running jobs
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# $Global::total_running = total number of running jobs
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# $Global::total_started = total jobs started
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# $Global::total_jobs = total jobs to be started at all
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# $Global::total_completed = total jobs completed
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sub init_run_jobs {
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# Remember the original STDOUT and STDERR
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open $Global::original_stdout, ">&STDOUT" or die "Can't dup STDOUT: $!";
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open $Global::original_stderr, ">&STDERR" or die "Can't dup STDERR: $!";
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open $Global::original_stdin, "<&STDIN" or die "Can't dup STDIN: $!";
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$Global::running_jobs=0;
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$Global::total_running = 0;
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$Global::total_started = 0;
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$Global::total_completed = 0;
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$SIG{USR1} = \&ListRunningJobs;
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$SIG{USR2} = \&toggle_progress;
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$Global::original_sigterm = $SIG{TERM};
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$SIG{TERM} = \&StartNoNewJobs;
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if(@::opt_basefile) {
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@ -2486,10 +2513,127 @@ sub unget_arg {
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}
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sub drain_job_queue {
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while($Global::running_jobs > 0) {
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debug("jobs running: $Global::running_jobs Memory usage:".my_memory_usage()."\n");
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sleep 1;
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if($::opt_progress) {
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print init_progress();
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}
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my $last_header="";
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while($Global::total_running > 0) {
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debug("jobs running: $Global::total_running Memory usage:".my_memory_usage()."\n");
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sleep 1;
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if($::opt_progress) {
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my %progress = progress();
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if($last_header ne $progress{'header'}) {
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print "\n",$progress{'header'},"\n";
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$last_header = $progress{'header'};
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}
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print "\r",$progress{'status'};
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}
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}
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if($::opt_progress) {
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print "\n";
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}
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}
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sub toggle_progress {
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# Turn on/off progress view
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$::opt_progress = not $::opt_progress;
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if($::opt_progress) {
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print init_progress();
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}
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}
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sub init_progress {
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$|=1;
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my %progress = progress();
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return ("\nComputers / CPU cores / Max jobs to run\n",
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$progress{'workerlist'},"\n");
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}
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sub progress {
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my $termcols = columns();
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my ($status, $header)=("x"x($termcols+1),"");
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my @workers = sort keys %Global::host;
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my %sshlogin = map { $_ eq ":" ? ($_=>"local") : ($_=>$_) } @workers;
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my $workerno = 1;
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my %workerno = map { ($_=>$workerno++) } @workers;
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my $workerlist = join("\n", map {
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$workerno{$_}.":".$sshlogin{$_} ." / ".
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($Global::host{$_}{'ncpus'} || "-") ." / ".
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$Global::host{$_}{'max_no_of_running'}
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} @workers);
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if(eof $Global::argfile) {
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# sshlogin1:XX/XX/XX% sshlogin2:XX/XX/XX% sshlogin3:XX/XX/XX%
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$header = "Computer:jobs running/jobs completed/%completed of all jobs";
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$status = join(" ",map
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{ sprintf("%s:%d/%d/%d%%",
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$sshlogin{$_}, $Global::host{$_}{'no_of_running'},
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($Global::host{$_}{'completed'}||0),
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($Global::host{$_}{'completed'}||0)*100
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/ $Global::total_started) }
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@workers);
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if(length $status > $termcols) {
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# 1:XX/XX/XX% 2:XX/XX/XX% 3:XX/XX/XX% 4:XX/XX/XX% 5:XX/XX/XX% 6:XX/XX/XX%
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$header = "Computer:jobs running/jobs completed/%completed of all jobs";
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$status = join(" ",map
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{ sprintf("%s:%d/%d/%d%%",
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$workerno{$_}, $Global::host{$_}{'no_of_running'},
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($Global::host{$_}{'completed'}||0),
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($Global::host{$_}{'completed'}||0)*100
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/ $Global::total_started) }
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@workers);
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}
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}
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if(length $status > $termcols) {
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# sshlogin1:XX/XX sshlogin2:XX/XX sshlogin3:XX/XX sshlogin4:XX/XX
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$header = "Computer:jobs running/jobs completed";
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$status = join(" ",map
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{ sprintf("%s:%d/%d",
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$sshlogin{$_}, $Global::host{$_}{'no_of_running'},
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($Global::host{$_}{'completed'}||0)) }
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@workers);
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}
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if(length $status > $termcols) {
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# 1:XX/XX 2:XX/XX 3:XX/XX 4:XX/XX 5:XX/XX 6:XX/XX
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$header = "Computer:jobs running/jobs completed";
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$status = join(" ",map
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{ sprintf("%s:%d/%d",
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$workerno{$_}, $Global::host{$_}{'no_of_running'},
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($Global::host{$_}{'completed'}||0)) }
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@workers);
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}
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if(length $status > $termcols) {
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# sshlogin1:XX sshlogin2:XX sshlogin3:XX sshlogin4:XX sshlogin5:XX
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$header = "Computer:jobs completed";
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$status = join(" ",map
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{ sprintf("%s:%d/%d",
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$sshlogin{$_},
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($Global::host{$_}{'completed'}||0)) }
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@workers);
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}
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if(length $status > $termcols) {
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# 1:XX 2:XX 3:XX 4:XX 5:XX 6:XX
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$header = "Computer:jobs completed";
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$status = join(" ",map
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{ sprintf("%s:%d/%d",
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$workerno{$_},
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($Global::host{$_}{'completed'}||0)) }
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@workers);
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}
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return ("workerlist" => $workerlist, "header" => $header, "status" => $status);
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}
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sub columns {
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# Get the number of columns of the display
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if(not $Global::columns) {
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$Global::columns = $ENV{'COLUMNS'};
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if(not $Global::columns) {
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my $resize = qx{ resize };
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$resize =~ /COLUMNS=(\d+);/ and do { $Global::columns = $1; };
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}
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$Global::columns ||= 80;
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}
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return $Global::columns;
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}
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sub start_more_jobs {
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@ -2582,8 +2726,9 @@ sub start_job {
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if($Global::verbose and not $Global::grouped) {
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print STDOUT $command,"\n";
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}
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$Global::running_jobs++;
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debug("$Global::running_jobs processes. Starting: $command\n");
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$Global::total_running++;
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$Global::total_started++;
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debug("$Global::total_running processes. Starting: $command\n");
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#print STDERR "LEN".length($command)."\n";
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$Global::job_start_sequence++;
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@ -2689,7 +2834,7 @@ sub parse_sshlogin {
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$Global::host{$sshlogin}{'maxlength'} = max_length_of_command_line();
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}
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debug("sshlogin: ", my_dump(%Global::host),"\n");
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if($::opt_transfer or @::opt_return or $::opt_cleanup) {
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if($::opt_transfer or @::opt_return or $::opt_cleanup or @::opt_basefile) {
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if(not remote_hosts()) {
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# There are no remote hosts
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if(defined @::opt_trc) {
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@ -2700,6 +2845,8 @@ sub parse_sshlogin {
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print STDERR "Warning: --return ignored as there are no remote --sshlogin\n";
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} elsif (defined $::opt_cleanup) {
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print STDERR "Warning: --cleanup ignored as there are no remote --sshlogin\n";
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} elsif (defined @::opt_basefile) {
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print STDERR "Warning: --basefile ignored as there are no remote --sshlogin\n";
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}
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}
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}
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@ -2784,6 +2931,9 @@ sub sshtransferreturn {
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if($transfer) {
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# Abs path: rsync -rlDzRE /home/tange/dir/subdir/file.gz server:/
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# Rel path: rsync -rlDzRE ./subdir/file.gz server:./
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if($relpath) {
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$file = "./".$file;
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}
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if(-r shell_unquote($file)) {
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return "rsync $rsync_opt $file $serverlogin:$rsync_destdir";
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} else {
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@ -2792,13 +2942,12 @@ sub sshtransferreturn {
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}
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} else {
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my $noext = no_extension($file); # Remove .ext before prepending ./
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# If relative path: prepend ./ (to avoid problems with ':')
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$noext = ($relpath ? "./".$noext : $noext);
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$file = ($relpath ? "./".$file : $file);
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my @cmd = ();
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for my $ret_file (@Global::ret_files) {
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my $remove = $removesource ? "--remove-source-files" : "";
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my $replaced = context_replace($ret_file,[$file],[$noext]);
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# If relative path: prepend ./ (to avoid problems with ':')
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my $replaced = ($relpath ? "./" : "") .
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context_replace($ret_file,[$file],[$noext]);
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# --return
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# Abs path: rsync -rlDzRE server:/home/tange/dir/subdir/file.gz /
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# Rel path: rsync -rlDzRE server:./subsir/file.gz ./
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@ -2940,7 +3089,9 @@ sub Reaper {
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}
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my $sshlogin = $Global::running{$stiff}{'sshlogin'};
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$Global::host{$sshlogin}{'no_of_running'}--;
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$Global::running_jobs--;
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$Global::host{$sshlogin}{'completed'}++;
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$Global::total_running--;
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$Global::total_completed++;
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delete $Global::running{$stiff};
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start_more_jobs();
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}
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@ -3072,9 +3223,9 @@ $Global::control_path = 0;
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# TODO --max-number-of-jobs print the system limited number of jobs
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# TODO Debian package
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# TODO try transfer + return of file beginning with :
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# TODO to kill from a run script parallel should set PARALLEL_PID that can be sig termed
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# TAGS: parallel | parallel processing | multicore | multiprocessor | Clustering/Distributed Networks
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# job control | multiple jobs | parallelization | text processing | cluster | filters
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# Clustering Tools | Command Line Tools | Utilities | System Administration
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# Bash parallel
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|
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@ -1,5 +1,6 @@
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#!/bin/bash
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export LANG=C
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SHFILE=/tmp/unittest-parallel.sh
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ls -t tests-to-run/test*.sh \
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|
|
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|
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@ -1,6 +1,17 @@
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### Check warning if --transfer but file not found
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Warning: /tmp/noexistant/file is not readable and will not be transferred
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/tmp/noexistant/file
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### Transfer for file starting with :
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remote-:.:
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content-:
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remote-file:name.file:name
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content-file:name
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remote-file:name.foo.file:name
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content-file:name.foo
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remote-file: name.foo.file: name
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content-file: name.foo
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remote-file : name.foo.file : name
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content-file : name.foo
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### Check warning if --transfer but not --sshlogin
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Warning: --transfer ignored as there are no remote --sshlogin
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|
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|
|
|
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|
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@ -1,11 +1,21 @@
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### Test --basefile with no --sshlogin
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Warning: --basefile ignored as there are no remote --sshlogin
|
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|
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### Test --basefile + --cleanup + permissions
|
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scriptrun 1
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scriptrun 2
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scriptrun 3
|
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scriptrun 4
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scriptrun 5
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script1 run 1
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script2 run 1
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script1 run 2
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script2 run 2
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script1 run 3
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script2 run 3
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script1 run 4
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script2 run 4
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script1 run 5
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script2 run 5
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good if no file
|
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ls: cannot access script: No such file or directory
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ls: cannot access script1: No such file or directory
|
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OK
|
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ls: cannot access script2: No such file or directory
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OK
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### Test --basefile + --sshlogin :
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1
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|
|
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|
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@ -8,6 +8,15 @@ SERVER2=parallel-server2
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echo '### Check warning if --transfer but file not found'
|
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echo /tmp/noexistant/file | stdout $PAR -k -S $SERVER1 --transfer echo
|
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|
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echo '### Transfer for file starting with :'
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cd /tmp
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(echo ':'; echo file:name; echo file:name.foo; echo file: name.foo; echo file : name.foo;) \
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> /tmp/test18
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cat /tmp/test18 | parallel echo content-{} ">" {}
|
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cat /tmp/test18 | parallel -j1 --trc {}.{.} -S $SERVER1,parallel@$SERVER2,: \
|
||||
'(echo remote-{}.{.};cat {}) > {}.{.}'
|
||||
cat /tmp/test18 | parallel -j1 -k 'cat {}.{.}'
|
||||
|
||||
echo '### Check warning if --transfer but not --sshlogin'
|
||||
echo | stdout $PAR -k --transfer echo
|
||||
|
||||
|
|
@ -28,7 +37,7 @@ echo "#2/ssh -l tange nothing" >>/tmp/parallel-sshlogin
|
|||
seq 1 10 | $PAR -k --sshloginfile /tmp/parallel-sshlogin echo
|
||||
|
||||
echo '### Check forced number of CPUs being respected'
|
||||
stdout cat /tmp/test17 | parallel -k -j+0 -S 1/:,9/$SERVER1 "hostname; echo {} >/dev/null"
|
||||
stdout seq 1 20 | parallel -k -j+0 -S 1/:,9/$SERVER1 "hostname; echo {} >/dev/null"
|
||||
|
||||
echo '### Check more than 9 simultaneous sshlogins'
|
||||
seq 1 11 | $PAR -k -j0 -S "/ssh $SERVER1" echo
|
||||
|
|
|
|||
|
|
@ -5,13 +5,18 @@ SERVER1=parallel-server1
|
|||
SERVER2=parallel-server2
|
||||
|
||||
cd /tmp
|
||||
(
|
||||
|
||||
echo '### Test --basefile with no --sshlogin'
|
||||
echo | stdout parallel --basefile foo echo
|
||||
|
||||
echo '### Test --basefile + --cleanup + permissions'
|
||||
echo echo scriptrun '"$@"' > script
|
||||
chmod 755 script
|
||||
seq 1 5 | parallel -kS $SERVER1 --cleanup -B script ./script
|
||||
echo echo script1 run '"$@"' > script1
|
||||
echo echo script2 run '"$@"' > script2
|
||||
chmod 755 script1 script2
|
||||
seq 1 5 | parallel -kS $SERVER1 --cleanup -B script1 --basefile script2 "./script1 {};./script2 {}"
|
||||
echo good if no file
|
||||
stdout ssh $SERVER1 ls 'script' || echo OK
|
||||
stdout ssh $SERVER1 ls 'script1' || echo OK
|
||||
stdout ssh $SERVER1 ls 'script2' || echo OK
|
||||
|
||||
echo '### Test --basefile + --sshlogin :'
|
||||
echo cat '"$@"' > my_script
|
||||
|
|
@ -22,4 +27,4 @@ seq 1 13 | parallel echo {} '>' parallel_{}.test
|
|||
ls parallel_*.test | parallel -j+0 --trc {.}.out -B my_script \
|
||||
-S parallel-server1,parallel@parallel-server2,: "./my_script {} > {.}.out"
|
||||
cat parallel_*.test parallel_*.out
|
||||
)
|
||||
|
||||
|
|
|
|||
|
|
@ -1,6 +1,17 @@
|
|||
### Check warning if --transfer but file not found
|
||||
Warning: /tmp/noexistant/file is not readable and will not be transferred
|
||||
/tmp/noexistant/file
|
||||
### Transfer for file starting with :
|
||||
remote-:.:
|
||||
content-:
|
||||
remote-file:name.file:name
|
||||
content-file:name
|
||||
remote-file:name.foo.file:name
|
||||
content-file:name.foo
|
||||
remote-file: name.foo.file: name
|
||||
content-file: name.foo
|
||||
remote-file : name.foo.file : name
|
||||
content-file : name.foo
|
||||
### Check warning if --transfer but not --sshlogin
|
||||
Warning: --transfer ignored as there are no remote --sshlogin
|
||||
|
||||
|
|
|
|||
|
|
@ -1,11 +1,21 @@
|
|||
### Test --basefile with no --sshlogin
|
||||
Warning: --basefile ignored as there are no remote --sshlogin
|
||||
|
||||
### Test --basefile + --cleanup + permissions
|
||||
scriptrun 1
|
||||
scriptrun 2
|
||||
scriptrun 3
|
||||
scriptrun 4
|
||||
scriptrun 5
|
||||
script1 run 1
|
||||
script2 run 1
|
||||
script1 run 2
|
||||
script2 run 2
|
||||
script1 run 3
|
||||
script2 run 3
|
||||
script1 run 4
|
||||
script2 run 4
|
||||
script1 run 5
|
||||
script2 run 5
|
||||
good if no file
|
||||
ls: cannot access script: No such file or directory
|
||||
ls: cannot access script1: No such file or directory
|
||||
OK
|
||||
ls: cannot access script2: No such file or directory
|
||||
OK
|
||||
### Test --basefile + --sshlogin :
|
||||
1
|
||||
|
|
|
|||
Loading…
Reference in a new issue