mirror of
https://git.savannah.gnu.org/git/parallel.git
synced 2024-11-24 06:57:55 +00:00
Released as 20191022 ('DrivingIT')
This commit is contained in:
Ole Tange
parent
73f554ad8f
commit
1ba05d3bb7
35
NEWS
35
NEWS
|
|
@ -1,3 +1,38 @@
|
|||
20191022
|
||||
|
||||
* --tee will use --output-error=warn-nopipe if supported by tee.
|
||||
|
||||
* GNU Parallel will be presented at Driving IT 2019:
|
||||
https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
|
||||
|
||||
* UMN Duluth: Job parallelization with task arrays and GNU parallel
|
||||
https://www.msi.umn.edu/tutorials/umn-duluth-job-parallelization-task-arrays-and-gnu-parallel
|
||||
|
||||
* Genome updater uses GNU Parallel
|
||||
https://github.com/pirovc/genome_updater
|
||||
|
||||
* Using GNU-Parallel for bioinformatics
|
||||
https://www.danielecook.com/using-gnu-parallel-for-bioinformatics/
|
||||
|
||||
* Speeding up PostgreSQL ETL pipeline with the help of GODS
|
||||
https://cfengine.com/company/blog-detail/speeding-up-postgresql-etl-pipeline-with-the-help-of-gods/
|
||||
|
||||
* Runing linux commands in parallel
|
||||
https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
|
||||
|
||||
* Research Computing University of Colorado Boulder contains an intro
|
||||
to GNU Parallel
|
||||
https://readthedocs.org/projects/curc/downloads/pdf/latest/
|
||||
|
||||
* 如何使用Parallel在Shell中并行执行命令
|
||||
https://www.myfreax.com/gnu-parallel/
|
||||
|
||||
* 如何测试 Amazon Elastic File System
|
||||
https://aws.amazon.com/cn/blogs/china/how-to-test-drive-amazon-elastic-file-system/
|
||||
|
||||
* Bug fixes and man page updates.
|
||||
|
||||
|
||||
20190922
|
||||
|
||||
* --nice is now inherited by the nice level that GNU Parallel is
|
||||
|
|
|
|||
20
README
20
README
|
|
@ -54,11 +54,11 @@ document.
|
|||
|
||||
Full installation of GNU Parallel is as simple as:
|
||||
|
||||
wget https://ftpmirror.gnu.org/parallel/parallel-20190922.tar.bz2
|
||||
wget https://ftpmirror.gnu.org/parallel/parallel-20190922.tar.bz2.sig
|
||||
gpg parallel-20190922.tar.bz2.sig
|
||||
bzip2 -dc parallel-20190922.tar.bz2 | tar xvf -
|
||||
cd parallel-20190922
|
||||
wget https://ftpmirror.gnu.org/parallel/parallel-20191022.tar.bz2
|
||||
wget https://ftpmirror.gnu.org/parallel/parallel-20191022.tar.bz2.sig
|
||||
gpg parallel-20191022.tar.bz2.sig
|
||||
bzip2 -dc parallel-20191022.tar.bz2 | tar xvf -
|
||||
cd parallel-20191022
|
||||
./configure && make && sudo make install
|
||||
|
||||
|
||||
|
|
@ -67,11 +67,11 @@ Full installation of GNU Parallel is as simple as:
|
|||
If you are not root you can add ~/bin to your path and install in
|
||||
~/bin and ~/share:
|
||||
|
||||
wget https://ftpmirror.gnu.org/parallel/parallel-20190922.tar.bz2
|
||||
wget https://ftpmirror.gnu.org/parallel/parallel-20190922.tar.bz2.sig
|
||||
gpg parallel-20190922.tar.bz2.sig
|
||||
bzip2 -dc parallel-20190922.tar.bz2 | tar xvf -
|
||||
cd parallel-20190922
|
||||
wget https://ftpmirror.gnu.org/parallel/parallel-20191022.tar.bz2
|
||||
wget https://ftpmirror.gnu.org/parallel/parallel-20191022.tar.bz2.sig
|
||||
gpg parallel-20191022.tar.bz2.sig
|
||||
bzip2 -dc parallel-20191022.tar.bz2 | tar xvf -
|
||||
cd parallel-20191022
|
||||
./configure --prefix=$HOME && make && make install
|
||||
|
||||
Or if your system lacks 'make' you can simply copy src/parallel
|
||||
|
|
|
|||
20
configure
vendored
20
configure
vendored
|
|
@ -1,6 +1,6 @@
|
|||
#! /bin/sh
|
||||
# Guess values for system-dependent variables and create Makefiles.
|
||||
# Generated by GNU Autoconf 2.69 for parallel 20190922.
|
||||
# Generated by GNU Autoconf 2.69 for parallel 20191022.
|
||||
#
|
||||
# Report bugs to <bug-parallel@gnu.org>.
|
||||
#
|
||||
|
|
@ -579,8 +579,8 @@ MAKEFLAGS=
|
|||
# Identity of this package.
|
||||
PACKAGE_NAME='parallel'
|
||||
PACKAGE_TARNAME='parallel'
|
||||
PACKAGE_VERSION='20190922'
|
||||
PACKAGE_STRING='parallel 20190922'
|
||||
PACKAGE_VERSION='20191022'
|
||||
PACKAGE_STRING='parallel 20191022'
|
||||
PACKAGE_BUGREPORT='bug-parallel@gnu.org'
|
||||
PACKAGE_URL=''
|
||||
|
||||
|
|
@ -1214,7 +1214,7 @@ if test "$ac_init_help" = "long"; then
|
|||
# Omit some internal or obsolete options to make the list less imposing.
|
||||
# This message is too long to be a string in the A/UX 3.1 sh.
|
||||
cat <<_ACEOF
|
||||
\`configure' configures parallel 20190922 to adapt to many kinds of systems.
|
||||
\`configure' configures parallel 20191022 to adapt to many kinds of systems.
|
||||
|
||||
Usage: $0 [OPTION]... [VAR=VALUE]...
|
||||
|
||||
|
|
@ -1281,7 +1281,7 @@ fi
|
|||
|
||||
if test -n "$ac_init_help"; then
|
||||
case $ac_init_help in
|
||||
short | recursive ) echo "Configuration of parallel 20190922:";;
|
||||
short | recursive ) echo "Configuration of parallel 20191022:";;
|
||||
esac
|
||||
cat <<\_ACEOF
|
||||
|
||||
|
|
@ -1357,7 +1357,7 @@ fi
|
|||
test -n "$ac_init_help" && exit $ac_status
|
||||
if $ac_init_version; then
|
||||
cat <<\_ACEOF
|
||||
parallel configure 20190922
|
||||
parallel configure 20191022
|
||||
generated by GNU Autoconf 2.69
|
||||
|
||||
Copyright (C) 2012 Free Software Foundation, Inc.
|
||||
|
|
@ -1374,7 +1374,7 @@ cat >config.log <<_ACEOF
|
|||
This file contains any messages produced by compilers while
|
||||
running configure, to aid debugging if configure makes a mistake.
|
||||
|
||||
It was created by parallel $as_me 20190922, which was
|
||||
It was created by parallel $as_me 20191022, which was
|
||||
generated by GNU Autoconf 2.69. Invocation command line was
|
||||
|
||||
$ $0 $@
|
||||
|
|
@ -2237,7 +2237,7 @@ fi
|
|||
|
||||
# Define the identity of the package.
|
||||
PACKAGE='parallel'
|
||||
VERSION='20190922'
|
||||
VERSION='20191022'
|
||||
|
||||
|
||||
cat >>confdefs.h <<_ACEOF
|
||||
|
|
@ -2880,7 +2880,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
|
|||
# report actual input values of CONFIG_FILES etc. instead of their
|
||||
# values after options handling.
|
||||
ac_log="
|
||||
This file was extended by parallel $as_me 20190922, which was
|
||||
This file was extended by parallel $as_me 20191022, which was
|
||||
generated by GNU Autoconf 2.69. Invocation command line was
|
||||
|
||||
CONFIG_FILES = $CONFIG_FILES
|
||||
|
|
@ -2942,7 +2942,7 @@ _ACEOF
|
|||
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
|
||||
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
|
||||
ac_cs_version="\\
|
||||
parallel config.status 20190922
|
||||
parallel config.status 20191022
|
||||
configured by $0, generated by GNU Autoconf 2.69,
|
||||
with options \\"\$ac_cs_config\\"
|
||||
|
||||
|
|
|
|||
|
|
@ -1,4 +1,4 @@
|
|||
AC_INIT([parallel], [20190922], [bug-parallel@gnu.org])
|
||||
AC_INIT([parallel], [20191022], [bug-parallel@gnu.org])
|
||||
AM_INIT_AUTOMAKE([-Wall -Werror foreign])
|
||||
AC_CONFIG_HEADERS([config.h])
|
||||
AC_CONFIG_FILES([
|
||||
|
|
|
|||
|
|
@ -1,4 +1,4 @@
|
|||
== Citation notice FAQ ==
|
||||
== Citation FAQ ==
|
||||
|
||||
> Why does GNU Parallel show a citation notice?
|
||||
|
||||
|
|
@ -9,7 +9,7 @@ maintaining GNU Parallel. This is much easier to get if GNU Parallel
|
|||
is cited in scientific journals, and history has shown that
|
||||
researchers forget to do this if they are not reminded explicitly.
|
||||
|
||||
It is therefore important for the long term survival of GNU Parallel
|
||||
It is therefore important for the long-term survival of GNU Parallel
|
||||
that it is cited. The citation notice makes users aware of this.
|
||||
|
||||
See also: https://lists.gnu.org/archive/html/parallel/2013-11/msg00006.html
|
||||
|
|
@ -139,8 +139,8 @@ should cite, over having many users, who do not know they should cite.
|
|||
If the goal had been to get more users, then the license would have
|
||||
been public domain.
|
||||
|
||||
This is because a long term survival with funding is more important
|
||||
than short term gains in popularity that can be achieved by being
|
||||
This is because a long-term survival with funding is more important
|
||||
than short-term gains in popularity that can be achieved by being
|
||||
distributed as part of a distribution.
|
||||
|
||||
|
||||
|
|
|
|||
|
|
@ -58,6 +58,9 @@ GNU parallel has helped me kill a Hadoop cluster before.
|
|||
|
||||
|
||||
=== Used ===
|
||||
I've said it before: The command line program GNU Parallel is a godsend.
|
||||
-- Jo Chr. Oterhals @oterhals
|
||||
|
||||
IMHO, SQLite and GNU Parallel are among the world's great software.
|
||||
-- singe@reddit
|
||||
|
||||
|
|
|
|||
|
|
@ -221,21 +221,31 @@ See https://www.gnu.org/software/parallel/10-years-anniversary.html
|
|||
|
||||
Quote of the month:
|
||||
|
||||
<<>>
|
||||
I've said it before: The command line program GNU Parallel is a godsend.
|
||||
-- Jo Chr. Oterhals @oterhals@twitter
|
||||
|
||||
New in this release:
|
||||
|
||||
Uses GNU Parallel https://github.com/pirovc/genome_updater
|
||||
* --tee will use --output-error=warn-nopipe if supported by tee.
|
||||
|
||||
Using GNU-Parallel for bioinformatics https://www.danielecook.com/using-gnu-parallel-for-bioinformatics/
|
||||
* GNU Parallel will be presented at Driving IT 2019: https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
|
||||
|
||||
Speeding up PostgreSQL ETL pipeline with the help of GODS https://cfengine.com/company/blog-detail/speeding-up-postgresql-etl-pipeline-with-the-help-of-gods/
|
||||
* UMN Duluth: Job parallelization with task arrays and GNU parallel https://www.msi.umn.edu/tutorials/umn-duluth-job-parallelization-task-arrays-and-gnu-parallel
|
||||
|
||||
* Genome updater uses GNU Parallel https://github.com/pirovc/genome_updater
|
||||
|
||||
https://readthedocs.org/projects/curc/downloads/pdf/latest/
|
||||
* Using GNU-Parallel for bioinformatics https://www.danielecook.com/using-gnu-parallel-for-bioinformatics/
|
||||
|
||||
* Speeding up PostgreSQL ETL pipeline with the help of GODS https://cfengine.com/company/blog-detail/speeding-up-postgresql-etl-pipeline-with-the-help-of-gods/
|
||||
|
||||
* Runing linux commands in parallel https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
|
||||
|
||||
* Research Computing University of Colorado Boulder contains an intro to GNU Parallel https://readthedocs.org/projects/curc/downloads/pdf/latest/
|
||||
|
||||
* 如何使用Parallel在Shell中并行执行命令https://www.myfreax.com/gnu-parallel/
|
||||
|
||||
* 如何测试 Amazon Elastic File System https://aws.amazon.com/cn/blogs/china/how-to-test-drive-amazon-elastic-file-system/
|
||||
|
||||
* Bug fixes and man page updates.
|
||||
|
||||
Get the book: GNU Parallel 2018 http://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
<directory name="parallel" rev="243" srcmd5="ba6c3e7fc48a6e47a37036e6b9adfd07" vrev="1">
|
||||
<entry md5="7612849c980a824d4fa53fbcea70d38d" mtime="1569136034" name="parallel-20190922.tar.bz2" size="2075216" />
|
||||
<entry md5="af96bbd6ff8e24206dd266138a970622" mtime="1569136034" name="parallel.spec" size="4751" />
|
||||
<entry md5="0ea55cca2fd79fc1fb3be0d64468a921" mtime="1569136035" name="parallel_20190922.dsc" size="556" />
|
||||
<entry md5="0dad22203209974d6a2d390f5e519008" mtime="1569136035" name="parallel_20190922.tar.gz" size="2252973" />
|
||||
<directory name="parallel" rev="244" srcmd5="0bc3563ade8042405b36915c03015124" vrev="1">
|
||||
<entry md5="457471b4306f1a2b356691444247a717" mtime="1571685322" name="parallel-20191022.tar.bz2" size="2080451" />
|
||||
<entry md5="c8e6f66a12226dfda64fb14b8cdc7159" mtime="1571685322" name="parallel.spec" size="4751" />
|
||||
<entry md5="04f57f67c60bc39a33adbe69b11cb257" mtime="1571685322" name="parallel_20191022.dsc" size="556" />
|
||||
<entry md5="5a61e4a88a27b355ce12f58023d8a26a" mtime="1571685323" name="parallel_20191022.tar.gz" size="2257704" />
|
||||
</directory>
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
|
||||
Summary: Shell tool for executing jobs in parallel
|
||||
Name: parallel
|
||||
Version: 20190922
|
||||
Version: 20191022
|
||||
Release: 1.3
|
||||
License: GPL-3.0-or-later
|
||||
Group: Productivity/File utilities
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
|
||||
Summary: Shell tool for executing jobs in parallel
|
||||
Name: parallel
|
||||
Version: 20190922
|
||||
Version: 20191022
|
||||
Release: 1.3
|
||||
License: GPL-3.0-or-later
|
||||
Group: Productivity/File utilities
|
||||
|
|
|
|||
|
|
@ -23,7 +23,7 @@
|
|||
use strict;
|
||||
use Getopt::Long;
|
||||
$Global::progname="niceload";
|
||||
$Global::version = 20190922;
|
||||
$Global::version = 20191022;
|
||||
Getopt::Long::Configure("bundling","require_order");
|
||||
get_options_from_array(\@ARGV) || die_usage();
|
||||
if($opt::version) {
|
||||
|
|
|
|||
15
src/parallel
15
src/parallel
|
|
@ -161,7 +161,8 @@ sub pipepart_setup() {
|
|||
# Set --blocksize = size / no of proc / (- $blocksize)
|
||||
$Global::dummy_jobs = 1;
|
||||
$Global::blocksize = 1 +
|
||||
int($size / max_jobs_running() / -$opt::blocksize);
|
||||
int($size / max_jobs_running() /
|
||||
-multiply_binary_prefix($opt::blocksize));
|
||||
}
|
||||
@Global::cat_prepends = map { pipe_part_files($_) } @opt::a;
|
||||
# Unget the empty arg as many times as there are parts
|
||||
|
|
@ -188,6 +189,7 @@ sub pipe_tee_setup() {
|
|||
# Test if tee supports --output-error=warn-nopipe
|
||||
`echo | tee --output-error=warn-nopipe /dev/null >/dev/null 2>/dev/null`;
|
||||
my $opt = $? ? "" : "--output-error=warn-nopipe";
|
||||
::debug("init","tee $opt");
|
||||
# Let tee inherit our stdin
|
||||
# and redirect stdout to null
|
||||
open STDOUT, ">","/dev/null";
|
||||
|
|
@ -502,7 +504,7 @@ sub pipe_shard_setup() {
|
|||
} else {
|
||||
$script = sharder_script();
|
||||
}
|
||||
|
||||
|
||||
# cat foo | sharder sep col fifo1 fifo2 fifo3 ... fifoN
|
||||
|
||||
if($shardbin =~ /^[a-z_][a-z_0-9]*(\s|$)/i) {
|
||||
|
|
@ -635,7 +637,10 @@ sub find_split_positions($$$) {
|
|||
push(@pos,$pos);
|
||||
} else {
|
||||
# Seek the the block start
|
||||
seek($fh, $pos, 0) || die;
|
||||
if(not seek($fh, $pos, 0)) {
|
||||
::error("Cannot seek to $pos in $file");
|
||||
edit(255);
|
||||
}
|
||||
while(read($fh,substr($buf,length $buf,0),$dd_block_size)) {
|
||||
if($opt::regexp) {
|
||||
# If match /$recend$recstart/ => Record position
|
||||
|
|
@ -2066,7 +2071,7 @@ sub check_invalid_option_combinations() {
|
|||
|
||||
sub init_globals() {
|
||||
# Defaults:
|
||||
$Global::version = 20190922;
|
||||
$Global::version = 20191022;
|
||||
$Global::progname = 'parallel';
|
||||
$::name = "GNU Parallel";
|
||||
$Global::infinity = 2**31;
|
||||
|
|
@ -10383,7 +10388,7 @@ sub push($) {
|
|||
push @{$self->{'arg_list'}}, $record;
|
||||
# Make @arg available for {= =}
|
||||
*Arg::arg = $self->{'arg_list_flat_orig'};
|
||||
|
||||
|
||||
my $quote_arg = ($Global::quote_replace and not $Global::quoting);
|
||||
for my $perlexpr (keys %{$self->{'replacecount'}}) {
|
||||
if($perlexpr =~ /^(\d+) /) {
|
||||
|
|
|
|||
|
|
@ -105,7 +105,7 @@ B<Bash, Csh, or Tcsh aliases>: Use B<env_parallel>.
|
|||
|
||||
B<Zsh, Fish, Ksh, and Pdksh functions and aliases>: Use B<env_parallel>.
|
||||
|
||||
=item B<{}> (beta testing)
|
||||
=item B<{}>
|
||||
|
||||
Input line. This replacement string will be replaced by a full line
|
||||
read from the input source. The input source is normally stdin
|
||||
|
|
@ -279,7 +279,6 @@ perl quote a string
|
|||
|
||||
=item Z<> B<uq()> (or B<uq>)
|
||||
|
||||
(beta testing)
|
||||
do not quote current replacement string
|
||||
|
||||
=item Z<> B<total_jobs()>
|
||||
|
|
@ -1244,9 +1243,9 @@ Similar to B<--memfree>.
|
|||
=back
|
||||
|
||||
|
||||
=item B<--line-buffer> (beta testing)
|
||||
=item B<--line-buffer>
|
||||
|
||||
=item B<--lb> (beta testing)
|
||||
=item B<--lb>
|
||||
|
||||
Buffer output on line basis. B<--group> will keep the output together
|
||||
for a whole job. B<--ungroup> allows output to mixup with half a line
|
||||
|
|
@ -1574,20 +1573,20 @@ on remote computers).
|
|||
Print the number of physical CPU cores and exit.
|
||||
|
||||
|
||||
=item B<--number-of-cores> (beta testing)
|
||||
=item B<--number-of-cores>
|
||||
|
||||
Print the number of physical CPU cores and exit (used by GNU B<parallel> itself
|
||||
to determine the number of physical CPU cores on remote computers).
|
||||
|
||||
|
||||
=item B<--number-of-sockets> (beta testing)
|
||||
=item B<--number-of-sockets>
|
||||
|
||||
Print the number of filled CPU sockets and exit (used by GNU
|
||||
B<parallel> itself to determine the number of filled CPU sockets on
|
||||
remote computers).
|
||||
|
||||
|
||||
=item B<--number-of-threads> (beta testing)
|
||||
=item B<--number-of-threads>
|
||||
|
||||
Print the number of hyperthreaded CPU cores and exit (used by GNU
|
||||
B<parallel> itself to determine the number of hyperthreaded CPU cores
|
||||
|
|
@ -1600,7 +1599,7 @@ Overrides an earlier B<--keep-order> (e.g. if set in
|
|||
B<~/.parallel/config>).
|
||||
|
||||
|
||||
=item B<--nice> I<niceness> (alpha testing)
|
||||
=item B<--nice> I<niceness> (beta testing)
|
||||
|
||||
Run the command at this niceness.
|
||||
|
||||
|
|
@ -1638,9 +1637,9 @@ B<,,>:
|
|||
See also: B<--rpl> B<{= perl expression =}>
|
||||
|
||||
|
||||
=item B<--profile> I<profilename> (beta testing)
|
||||
=item B<--profile> I<profilename>
|
||||
|
||||
=item B<-J> I<profilename> (beta testing)
|
||||
=item B<-J> I<profilename>
|
||||
|
||||
Use profile I<profilename> for options. This is useful if you want to
|
||||
have multiple profiles. You could have one profile for running jobs in
|
||||
|
|
@ -2192,7 +2191,7 @@ Only supported in B<Ash, Bash, Dash, Ksh, Sh, and Zsh>.
|
|||
See also B<--env>, B<--record-env>.
|
||||
|
||||
|
||||
=item B<--shard> I<shardexpr> (alpha testing)
|
||||
=item B<--shard> I<shardexpr> (beta testing)
|
||||
|
||||
Use I<shardexpr> as shard key and shard input to the jobs.
|
||||
|
||||
|
|
@ -2518,7 +2517,7 @@ to GNU B<parallel> giving each child its own process group, which is
|
|||
then killed. Process groups are dependant on the tty.
|
||||
|
||||
|
||||
=item B<--tag> (beta testing)
|
||||
=item B<--tag>
|
||||
|
||||
Tag lines with arguments. Each output line will be prepended with the
|
||||
arguments and TAB (\t). When combined with B<--onall> or B<--nonall>
|
||||
|
|
@ -2527,7 +2526,7 @@ the lines will be prepended with the sshlogin instead.
|
|||
B<--tag> is ignored when using B<-u>.
|
||||
|
||||
|
||||
=item B<--tagstring> I<str> (beta testing)
|
||||
=item B<--tagstring> I<str>
|
||||
|
||||
Tag lines with a string. Each output line will be prepended with
|
||||
I<str> and TAB (\t). I<str> can contain replacement strings such as
|
||||
|
|
@ -4781,7 +4780,7 @@ B<--ssh>. It can also be set on a per server basis (see
|
|||
B<--sshlogin>).
|
||||
|
||||
|
||||
=item $PARALLEL_SSHLOGIN (beta testing)
|
||||
=item $PARALLEL_SSHLOGIN
|
||||
|
||||
The environment variable $PARALLEL_SSHLOGIN is set by GNU B<parallel>
|
||||
and is visible to the jobs started from GNU B<parallel>. The value is
|
||||
|
|
|
|||
|
|
@ -2307,6 +2307,29 @@ https://github.com/flesler/parallel
|
|||
|
||||
https://github.com/Julian/Verge
|
||||
|
||||
https://github.com/ExpectationMax/simple_gpu_scheduler
|
||||
simple_gpu_scheduler --gpus 0 1 2 < gpu_commands.txt
|
||||
parallel -j3 --shuf CUDA_VISIBLE_DEVICES='{=1 $_=slot()-1 =} {=uq;=}' < gpu_commands.txt
|
||||
|
||||
simple_hypersearch "python3 train_dnn.py --lr {lr} --batch_size {bs}" -p lr 0.001 0.0005 0.0001 -p bs 32 64 128 | simple_gpu_scheduler --gpus 0,1,2
|
||||
parallel --header : --shuf -j3 -v CUDA_VISIBLE_DEVICES='{=1 $_=slot()-1 =}' python3 train_dnn.py --lr {lr} --batch_size {bs} ::: lr 0.001 0.0005 0.0001 ::: bs 32 64 128
|
||||
|
||||
simple_hypersearch "python3 train_dnn.py --lr {lr} --batch_size {bs}" --n-samples 5 -p lr 0.001 0.0005 0.0001 -p bs 32 64 128 | simple_gpu_scheduler --gpus 0,1,2
|
||||
parallel --header : --shuf CUDA_VISIBLE_DEVICES='{=1 $_=slot()-1; seq() > 5 and skip() =}' python3 train_dnn.py --lr {lr} --batch_size {bs} ::: lr 0.001 0.0005 0.0001 ::: bs 32 64 128
|
||||
|
||||
touch gpu.queue
|
||||
tail -f -n 0 gpu.queue | simple_gpu_scheduler --gpus 0,1,2 &
|
||||
echo "my_command_with | and stuff > logfile" >> gpu.queue
|
||||
|
||||
touch gpu.queue
|
||||
tail -f -n 0 gpu.queue | parallel -j3 CUDA_VISIBLE_DEVICES='{=1 $_=slot()-1 =} {=uq;=}' &
|
||||
# Needed to fill job slots once
|
||||
seq 3 | parallel echo true >> gpu.queue
|
||||
# Add jobs
|
||||
echo "my_command_with | and stuff > logfile" >> gpu.queue
|
||||
# Needed to flush output from completed jobs
|
||||
seq 3 | parallel echo true >> gpu.queue
|
||||
|
||||
|
||||
=head1 TESTING OTHER TOOLS
|
||||
|
||||
|
|
|
|||
2
src/sql
2
src/sql
|
|
@ -574,7 +574,7 @@ $Global::Initfile && unlink $Global::Initfile;
|
|||
exit ($err);
|
||||
|
||||
sub parse_options {
|
||||
$Global::version = 20190922;
|
||||
$Global::version = 20191022;
|
||||
$Global::progname = 'sql';
|
||||
|
||||
# This must be done first as this may exec myself
|
||||
|
|
|
|||
|
|
@ -2165,6 +2165,14 @@ par_null_resume() {
|
|||
rm "$log"
|
||||
}
|
||||
|
||||
par_block_negative_prefix() {
|
||||
tmp=`mktemp`
|
||||
seq 100000 > $tmp
|
||||
echo '### This should generate 10*2 jobs'
|
||||
parallel -j2 -a $tmp --pipepart --block -0.01k -k md5sum | wc
|
||||
rm $tmp
|
||||
}
|
||||
|
||||
export -f $(compgen -A function | grep par_)
|
||||
compgen -A function | grep par_ | LC_ALL=C sort |
|
||||
parallel -j6 --tag -k --joblog /tmp/jl-`basename $0` '{} 2>&1'
|
||||
|
|
|
|||
|
|
@ -31,8 +31,8 @@ par_memory_leak() {
|
|||
export -f a_run
|
||||
echo "### Test for memory leaks"
|
||||
echo "Of 100 runs of 1 job none should be bigger than a 3000 job run"
|
||||
small_max=$(seq 100 | parallel a_run 1 | jq -s max)
|
||||
big=$(a_run 3000)
|
||||
. `which env_parallel.bash`
|
||||
parset small_max,big ::: 'seq 100 | parallel a_run 1 | jq -s max' 'a_run 3000'
|
||||
if [ $small_max -lt $big ] ; then
|
||||
echo "Bad: Memleak likely."
|
||||
else
|
||||
|
|
@ -181,6 +181,7 @@ par_linebuffer_files() {
|
|||
rm -rf "/tmp/par48658-$compress"
|
||||
}
|
||||
export -f doit
|
||||
# lrz complains 'Warning, unable to set nice value on thread'
|
||||
parallel -j1 --tag -k doit ::: zstd pzstd clzip lz4 lzop pigz pxz gzip plzip pbzip2 lzma xz lzip bzip2 lbzip2 lrz
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -181,11 +181,14 @@ par_no_route_to_host() {
|
|||
|
||||
(
|
||||
# Cache a list of hosts that fail fast with 'No route'
|
||||
# Filter the list 4 times to make sure to get good hosts
|
||||
renice 10 -p $$ >/dev/null
|
||||
findhosts | filterhosts | filterhosts | filterhosts |
|
||||
filterhosts | filterhosts | head > /tmp/filtered.$$
|
||||
mv /tmp/filtered.$$ /tmp/filtered.hosts
|
||||
# Filter the list 5 times to make sure to get good hosts
|
||||
export -f findhosts
|
||||
export -f filterhosts
|
||||
nice bash -c '
|
||||
findhosts | filterhosts | filterhosts | filterhosts |
|
||||
filterhosts | filterhosts | head > /tmp/filtered.$$
|
||||
mv /tmp/filtered.$$ /tmp/filtered.hosts
|
||||
'
|
||||
) &
|
||||
(
|
||||
# We just need one of each to complete
|
||||
|
|
|
|||
|
|
@ -1,3 +1,5 @@
|
|||
par_block_negative_prefix ### This should generate 10*2 jobs
|
||||
par_block_negative_prefix 20 40 720
|
||||
par_compress_prg_fails ### bug #44546: If --compress-program fails: fail
|
||||
par_compress_prg_fails 1
|
||||
par_compress_prg_fails parallel: Error: false failed.
|
||||
|
|
|
|||
|
|
@ -83,7 +83,7 @@ echo '### bug #42893: --block should not cause decimals in cat_partial'
|
|||
echo '### bug #42892: parallel -a nonexiting --pipepart'
|
||||
### bug #42892: parallel -a nonexiting --pipepart
|
||||
parallel --pipepart -a nonexisting wc
|
||||
parallel: Error: nonexisting is neither a file nor a block device
|
||||
parallel: Error: File not found: nonexisting
|
||||
echo '### added transfersize/returnsize to local jobs'
|
||||
### added transfersize/returnsize to local jobs
|
||||
echo '### normal'
|
||||
|
|
|
|||
|
|
@ -788,6 +788,17 @@ freebsd ~/.profile
|
|||
freebsd ~/.cshrc
|
||||
freebsd ~/.tcshrc
|
||||
freebsd install-OK
|
||||
hpux Installed env_parallel in:
|
||||
hpux ~/.bashrc
|
||||
hpux ~/.shrc
|
||||
hpux ~/.zshenv
|
||||
hpux ~/.config/fish/config.fish
|
||||
hpux ~/.kshrc
|
||||
hpux ~/.mkshrc
|
||||
hpux ~/.profile
|
||||
hpux ~/.cshrc
|
||||
hpux ~/.tcshrc
|
||||
hpux install-OK
|
||||
hpux-ia64 Installed env_parallel in:
|
||||
hpux-ia64 ~/.bashrc
|
||||
hpux-ia64 ~/.shrc
|
||||
|
|
@ -811,17 +822,6 @@ hurd ~/.profile
|
|||
hurd ~/.cshrc
|
||||
hurd ~/.tcshrc
|
||||
hurd install-OK
|
||||
hpux Installed env_parallel in:
|
||||
hpux ~/.bashrc
|
||||
hpux ~/.shrc
|
||||
hpux ~/.zshenv
|
||||
hpux ~/.config/fish/config.fish
|
||||
hpux ~/.kshrc
|
||||
hpux ~/.mkshrc
|
||||
hpux ~/.profile
|
||||
hpux ~/.cshrc
|
||||
hpux ~/.tcshrc
|
||||
hpux install-OK
|
||||
hpux-ia64 Installed env_parallel in:
|
||||
hpux-ia64 /home/t/tange/.bashrc
|
||||
hpux-ia64 /home/t/tange/.shrc
|
||||
|
|
|
|||
Loading…
Reference in a new issue