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parallel: Dynamic replacement strings --rpl '%(.*) s/$$1//' initial version.
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4
NEWS
4
NEWS
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@ -336,7 +336,9 @@
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reproducibility
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reproducibility
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http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
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http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
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* GNU Parallel was cited in: FlashPCA: fast sparse canonical correlation analysis of genomic data http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
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* GNU Parallel was cited in: FlashPCA: fast sparse canonical
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correlation analysis of genomic data
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http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
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* GNU Parallel was cited in: Computational Design of DNA-Binding
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* GNU Parallel was cited in: Computational Design of DNA-Binding
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Proteins
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Proteins
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@ -206,6 +206,7 @@ Haiku of the month:
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New in this release:
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New in this release:
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http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
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http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
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http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
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* <<Possibly http://link.springer.com/chapter/10.1007%2F978-3-319-22053-6_46>>
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* <<Possibly http://link.springer.com/chapter/10.1007%2F978-3-319-22053-6_46>>
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48
src/parallel
48
src/parallel
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@ -9449,18 +9449,60 @@ sub new {
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}
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}
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# Needs to match rightmost left parens (Perl defaults to leftmost)
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# Needs to match rightmost left parens (Perl defaults to leftmost)
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# to deal with: {={==}
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# to deal with: {={==}
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# Replace {= -> \257< and =} -> \257>
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while(s{([^\257]*) \Q$Global::parensleft\E ([^\257]*?) \Q$Global::parensright\E }
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while(s{([^\257]*) \Q$Global::parensleft\E ([^\257]*?) \Q$Global::parensright\E }
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{$1\257<$2\257>}gx) {}
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{$1\257<$2\257>}gx) {}
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for my $rpl (sort { length $b <=> length $a } keys %Global::rpl) {
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for my $rpl (sort { length $b <=> length $a } keys %Global::rpl) {
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# Replace long --rpl's before short ones, as a short may be a
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# Replace long --rpl's before short ones, as a short may be a
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# substring of a long:
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# substring of a long:
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# --rpl '% s/a/b/' --rpl '%% s/b/a/'
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# --rpl '% s/a/b/' --rpl '%% s/b/a/'
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#
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# Replace the short hand string (--rpl)
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# Replace the short hand string (--rpl)
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# with the {= perl expr =}
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# with the {= perl expr =}
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#
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# Avoid replacing inside existing {= perl expr =}
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# Avoid replacing inside existing {= perl expr =}
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while(s{((^|\257>)[^\257]*?) # Don't replace after \257 unless \257>
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#
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\Q$rpl\E}
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# Replace $$1 in {= perl expr =} with groupings in short hand string
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{$1\257<$Global::rpl{$rpl}\257>}xg) {
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#
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# ppar --rpl '{rm_suffix(\S+)} s/$$1$//;' echo {rm_suffix.tar.gz} ::: UU.tar.gz
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# ppar --rpl '{%(\S+)} s/$$1$//;' echo {%.tar.gz} ::: UU.tar.gz
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#
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# ppar --rpl '{rm_prefix(\S+)} s/^$$1//;' echo {rm_prefixUU.} ::: UU.tar.gz
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# ppar --rpl '{#(\S+)} s/^$$1//;' echo {rm_prefixUU.} ::: UU.tar.gz
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#
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# ppar --rpl '{replace(\.\S+)/(\.\S+)} s/$$1/$$2/g;' echo {replace.tar/.gz} ::: UU.tar.gz
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# ppar --rpl '{/(\.\S+)/(\.\S+)} s/$$1/$$2/g;' echo {/.tar/.gz} ::: UU.tar.gz
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my ($prefix,$grp_regexp,$postfix) =
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$rpl =~ /^( [^(]* ) # Prefix - e.g. {%%
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( \(.*\) )? # Group capture regexp - e.g (.*)
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( [^)]* )$ # Postfix - e.g }
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/x;
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my $rplval = $Global::rpl{$rpl};
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while(s{( (?: ^|\257> ) [^\257]*? ) # Don't replace after \257 unless \257>
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\Q$prefix\E $grp_regexp \Q$postfix\E}
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{
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# The start remains the same
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my $unchanged = $1;
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# Dummy entry to start at 2.
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my @grp = (1);
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# $2 = first ()-group in $grp_regexp
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# Put $2 in $grp[1], Put $3 in $grp[2]
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# so first ()-group in $grp_regexp is $grp[1];
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for(my $i = 2; defined $grp[$#grp]; $i++) {
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push @grp, eval '$'.$i;
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}
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my $rv = $rplval;
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# replace $$1 with $_pAr_gRp1, $$2 with $_pAr_gRp2
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# in the code to be executed
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$rv =~ s/\$\$(\d+)/\$_pAr_gRp$1/g;
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# prepend with $_pAr_gRp1 = perlquote($1),
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my $set_args = "";
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for(my $i = 1;defined $grp[$i]; $i++) {
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$set_args .= "\$_pAr_gRp$i = \"" .
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::perl_quote_scalar($grp[$i]) . "\";";
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}
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$unchanged . "\257<" . $set_args . $rv . "\257>"
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}gxe) {
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}
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}
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# Do the same for the positional replacement strings
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# Do the same for the positional replacement strings
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# A bit harder as we have to put in the position number
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# A bit harder as we have to put in the position number
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@ -1778,6 +1778,22 @@ Here are a few examples:
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Job slot counting from 2
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Job slot counting from 2
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--rpl '{%1} $_ = slot() + 1'
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--rpl '{%1} $_ = slot() + 1'
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You can have dynamic replacement strings by including parenthesis in
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the replacement string and adding a regular expression between the
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parenthesis. The matching string will be inserted as $$1:
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parallel --rpl '{%(.*?)} s/$$1//' echo {%.tar.gz} ::: file.tar.gz
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You can even use multiple matches:
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parallel --rpl '{@(\d+)\S(\d+)\S(\d+)}
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if($$3 > 31) { ($$1,$$2,$$3) = ($$3,$$2,$$1) }
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if($$2 > 12) { ($$1,$$2,$$3) = ($$1,$$3,$$2) }
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$$1 = ($$1%100 + 1900); $_="$$1-$$2-$$3"
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' echo {@99-12-31} {@12.31.99} {@31/12-1999} ::: a
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parallel --rpl '{(.*?)/(.*?)} $_="$$2$_$$1"' echo {swap/these} ::: -middle-
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See also: B<{= perl expression =}> B<--parens>
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See also: B<{= perl expression =}> B<--parens>
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