parallel: Dynamic replacement strings --rpl '%(.*) s/$$1//' initial version.

This commit is contained in:
Ole Tange 2017-03-10 19:39:53 +01:00
parent 06e2dd958d
commit 2724941a91
4 changed files with 67 additions and 6 deletions

4
NEWS
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@ -336,7 +336,9 @@
reproducibility
http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
* GNU Parallel was cited in: FlashPCA: fast sparse canonical correlation analysis of genomic data http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
* GNU Parallel was cited in: FlashPCA: fast sparse canonical
correlation analysis of genomic data
http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
* GNU Parallel was cited in: Computational Design of DNA-Binding
Proteins

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@ -206,6 +206,7 @@ Haiku of the month:
New in this release:
http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
* <<Possibly http://link.springer.com/chapter/10.1007%2F978-3-319-22053-6_46>>

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@ -9449,18 +9449,60 @@ sub new {
}
# Needs to match rightmost left parens (Perl defaults to leftmost)
# to deal with: {={==}
# Replace {= -> \257< and =} -> \257>
while(s{([^\257]*) \Q$Global::parensleft\E ([^\257]*?) \Q$Global::parensright\E }
{$1\257<$2\257>}gx) {}
for my $rpl (sort { length $b <=> length $a } keys %Global::rpl) {
# Replace long --rpl's before short ones, as a short may be a
# substring of a long:
# --rpl '% s/a/b/' --rpl '%% s/b/a/'
#
# Replace the short hand string (--rpl)
# with the {= perl expr =}
#
# Avoid replacing inside existing {= perl expr =}
while(s{((^|\257>)[^\257]*?) # Don't replace after \257 unless \257>
\Q$rpl\E}
{$1\257<$Global::rpl{$rpl}\257>}xg) {
#
# Replace $$1 in {= perl expr =} with groupings in short hand string
#
# ppar --rpl '{rm_suffix(\S+)} s/$$1$//;' echo {rm_suffix.tar.gz} ::: UU.tar.gz
# ppar --rpl '{%(\S+)} s/$$1$//;' echo {%.tar.gz} ::: UU.tar.gz
#
# ppar --rpl '{rm_prefix(\S+)} s/^$$1//;' echo {rm_prefixUU.} ::: UU.tar.gz
# ppar --rpl '{#(\S+)} s/^$$1//;' echo {rm_prefixUU.} ::: UU.tar.gz
#
# ppar --rpl '{replace(\.\S+)/(\.\S+)} s/$$1/$$2/g;' echo {replace.tar/.gz} ::: UU.tar.gz
# ppar --rpl '{/(\.\S+)/(\.\S+)} s/$$1/$$2/g;' echo {/.tar/.gz} ::: UU.tar.gz
my ($prefix,$grp_regexp,$postfix) =
$rpl =~ /^( [^(]* ) # Prefix - e.g. {%%
( \(.*\) )? # Group capture regexp - e.g (.*)
( [^)]* )$ # Postfix - e.g }
/x;
my $rplval = $Global::rpl{$rpl};
while(s{( (?: ^|\257> ) [^\257]*? ) # Don't replace after \257 unless \257>
\Q$prefix\E $grp_regexp \Q$postfix\E}
{
# The start remains the same
my $unchanged = $1;
# Dummy entry to start at 2.
my @grp = (1);
# $2 = first ()-group in $grp_regexp
# Put $2 in $grp[1], Put $3 in $grp[2]
# so first ()-group in $grp_regexp is $grp[1];
for(my $i = 2; defined $grp[$#grp]; $i++) {
push @grp, eval '$'.$i;
}
my $rv = $rplval;
# replace $$1 with $_pAr_gRp1, $$2 with $_pAr_gRp2
# in the code to be executed
$rv =~ s/\$\$(\d+)/\$_pAr_gRp$1/g;
# prepend with $_pAr_gRp1 = perlquote($1),
my $set_args = "";
for(my $i = 1;defined $grp[$i]; $i++) {
$set_args .= "\$_pAr_gRp$i = \"" .
::perl_quote_scalar($grp[$i]) . "\";";
}
$unchanged . "\257<" . $set_args . $rv . "\257>"
}gxe) {
}
# Do the same for the positional replacement strings
# A bit harder as we have to put in the position number

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@ -1778,6 +1778,22 @@ Here are a few examples:
Job slot counting from 2
--rpl '{%1} $_ = slot() + 1'
You can have dynamic replacement strings by including parenthesis in
the replacement string and adding a regular expression between the
parenthesis. The matching string will be inserted as $$1:
parallel --rpl '{%(.*?)} s/$$1//' echo {%.tar.gz} ::: file.tar.gz
You can even use multiple matches:
parallel --rpl '{@(\d+)\S(\d+)\S(\d+)}
if($$3 > 31) { ($$1,$$2,$$3) = ($$3,$$2,$$1) }
if($$2 > 12) { ($$1,$$2,$$3) = ($$1,$$3,$$2) }
$$1 = ($$1%100 + 1900); $_="$$1-$$2-$$3"
' echo {@99-12-31} {@12.31.99} {@31/12-1999} ::: a
parallel --rpl '{(.*?)/(.*?)} $_="$$2$_$$1"' echo {swap/these} ::: -middle-
See also: B<{= perl expression =}> B<--parens>