tange/parallel
1
0
Fork 0
mirror of https://git.savannah.gnu.org/git/parallel.git synced 2024-11-22 14:07:55 +00:00
Code Issues Actions Packages Projects Releases Wiki Activity

Fixed bug #44358: 2 GB records cause problems for -N.

Browse source
This commit is contained in:
Ole Tange 2015-02-24 23:23:18 +01:00
parent c445232b23
commit 2dee8e452b
7 changed files with 126 additions and 22 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

111
src/parallel
View file

@ -251,7 +251,7 @@ sub find_split_positions {
}
} else {
# If match $recend$recstart => Record position
my $i = index($buf,$recendrecstart);
my $i = index64(\$buf,$recendrecstart);
if($i != -1) {
push(@pos,$pos+$i);
# Start looking for next record _after_ this match
@ -301,8 +301,8 @@ sub spreadstdin {
my $recendrecstart = $recend.$recstart;
my $chunk_number = 1;
my $one_time_through;
my $two_gb = (2<<30)-1;
my $blocksize = ::min($opt::blocksize,$two_gb);
my $two_gb = (1<<31)-1;
my $blocksize = $opt::blocksize;
my $in = *STDIN;
my $header = find_header(\$buf,$in);
while(1) {
@ -323,10 +323,10 @@ sub spreadstdin {
if($Global::max_lines and not $Global::max_number_of_args) {
# Read n-line records
my $n_lines = $buf =~ tr/\n/\n/;
my $last_newline_pos = rindex($buf,"\n");
my $last_newline_pos = rindex64(\$buf,"\n");
while($n_lines % $Global::max_lines) {
$n_lines--;
$last_newline_pos = rindex($buf,"\n",$last_newline_pos-1);
$last_newline_pos = rindex64(\$buf,"\n",$last_newline_pos-1);
}
# Chop at $last_newline_pos as that is where n-line record ends
$anything_written +=
@ -368,19 +368,8 @@ sub spreadstdin {
substr($buf,0,$i) = "";
}
} else {
my $i;
if(length $buf < $two_gb) {
# Find the last recend+recstart in $buf
$i = rindex($buf,$recendrecstart);
} else {
# Find the last recend+recstart in the last 2 GB of $buf
# rindex does not work on > 2GB
my $over2gb = (length $buf)-$two_gb;
$i = rindex(substr($buf,$over2gb,$two_gb),$recendrecstart);
if($i != -1) {
$i += $over2gb;
}
}
# Find the last recend+recstart in $buf
my $i = rindex64(\$buf,$recendrecstart);
if($i != -1) {
$i += length $recend; # find the actual splitting location
$anything_written +=
@ -471,8 +460,9 @@ sub nindex {
# the position where the Nth copy is found
my ($buf_ref, $str, $n) = @_;
my $i = 0;
my $two_gb = (1<<31)-1;
for(1..$n) {
$i = index($$buf_ref,$str,$i+1);
$i = index64($buf_ref,$str,$i+1);
if($i == -1) { last }
}
return $i;
@ -520,6 +510,79 @@ sub nindex {
}
}
sub index64 {
# Do index on strings > 2GB.
# index in Perl < v5.22 does not work for > 2GB
# Input:
# as index
# Output:
# as index
my $ref = shift;
my $match = shift;
my $pos = shift || 0;
my $block_size = (1<<31)-1;
my $strlen = length($$ref);
# No point in doing extra work if we don't need to.
if($strlen < $block_size) {
return index($$ref, $match, $pos);
}
my $matchlen = length($match);
my $ret;
my $offset = $pos;
while($offset < $strlen) {
$ret = index(
substr($$ref, $offset, $block_size),
$match, $pos-$offset);
if($ret != -1) {
return $ret + $offset;
}
$offset += ($block_size - $matchlen - 1);
}
return -1;
}
sub rindex64 {
# Do rindex on strings > 2GB.
# rindex in Perl < v5.22 does not work for > 2GB
# Input:
# as rindex
# Output:
# as rindex
my $ref = shift;
my $match = shift;
my $pos = shift;
my $block_size = (1<<31)-1;
my $strlen = length($$ref);
# Default: search from end
$pos = defined $pos ? $pos : $strlen;
# No point in doing extra work if we don't need to.
if($strlen < $block_size) {
return rindex($$ref, $match, $pos);
}
my $matchlen = length($match);
my $ret;
my $offset = $pos - $block_size + $matchlen;
if($offset < 0) {
# The offset is less than a $block_size
# Set the $offset to 0 and
# Adjust block_size accordingly
$block_size = $block_size + $offset;
$offset = 0;
}
while($offset >= 0) {
$ret = rindex(
substr($$ref, $offset, $block_size),
$match);
if($ret != -1) {
return $ret + $offset;
}
$offset -= ($block_size - $matchlen - 1);
}
return -1;
}
sub write_record_to_pipe {
# Fork then
# Write record from pos 0 .. $endpos to pipe
@ -831,6 +894,10 @@ sub parse_options {
not defined $opt::recend) { $opt::recend = "\n"; }
if(not defined $opt::blocksize) { $opt::blocksize = "1M"; }
$opt::blocksize = multiply_binary_prefix($opt::blocksize);
if($opt::blocksize > (1<<31)-1) {
warning("--blocksize >= 2G causes problems. Using 2G-1\n");
$opt::blocksize = (1<<31)-1;
}
$opt::memfree = multiply_binary_prefix($opt::memfree);
if(defined $opt::controlmaster) { $opt::noctrlc = 1; }
if(defined $opt::halt and
@ -6771,7 +6838,7 @@ sub linebuffer_print {
while(read($in_fh,substr($$partial,length $$partial),3276800)) {
# Append to $$partial
# Find the last \n
my $i = rindex($$partial,"\n");
my $i = ::rindex64($partial,"\n");
if($i != -1) {
# One or more complete lines were found
if($fdno == 2 and not $self->{'printed_first_line',$fdno}++) {
@ -6779,14 +6846,14 @@ sub linebuffer_print {
# This is a crappy way of ignoring it.
$$partial =~ s/^(client_process_control: )?tcgetattr: Invalid argument\n//;
# Length of partial line has changed: Find the last \n again
$i = rindex($$partial,"\n");
$i = ::rindex64($partial,"\n");
}
if($opt::tag or defined $opt::tagstring) {
# Replace ^ with $tag within the full line
my $tag = $self->tag();
substr($$partial,0,$i+1) =~ s/^/$tag/gm;
# Length of partial line has changed: Find the last \n again
$i = rindex($$partial,"\n");
$i = ::rindex64($partial,"\n");
}
# Print up to and including the last \n
print $out_fd substr($$partial,0,$i+1);

6
testsuite/tests-to-run/parallel-local114.sh
View file

@ -1,6 +1,12 @@
#!/bin/bash
cat <<'EOF' | sed -e 's/;$/; /;s/$SERVER1/'$SERVER1'/;s/$SERVER2/'$SERVER2'/' | stdout parallel -vj0 -k --joblog /tmp/jl-`basename $0` -L1
echo '### bug #44358: 2 GB records cause problems for -N2'
(yes "`echo {1..100}`" | head -c 5000000000; echo FOO;
yes "`echo {1..100}`" | head -c 3000000000; echo FOO;
yes "`echo {1..100}`" | head -c 1000000000;) |
parallel --pipe --recend FOO'\n' --block 1g -k LANG=c wc -c
echo "### --line-buffer"
seq 10 | parallel -j20 --line-buffer 'seq {} 10 | pv -qL 10' > /tmp/parallel_l$$;
seq 10 | parallel -j20 'seq {} 10 | pv -qL 10' > /tmp/parallel_$$;

6
testsuite/tests-to-run/parallel-local19.sh
View file

@ -29,6 +29,12 @@ ls | parallel -kv rm -- {.}/abc-{.}-{} 2>&1
# -L1 will join lines ending in ' '
cat <<'EOF' | sed -e s/\$SERVER1/$SERVER1/\;s/\$SERVER2/$SERVER2/ | nice parallel -vj0 -k -L1
echo '### bug #44358: 2 GB records cause problems for -N2'
(yes "`echo {1..100}`" | head -c 5000000000; echo FOO;
yes "`echo {1..100}`" | head -c 3000000000; echo FOO;
yes "`echo {1..100}`" | head -c 1000000000;) |
parallel --pipe --recend FOO'\n' -N2 --block 1g -k LANG=c wc -c
echo '### Test compress'
seq 5 | parallel -j2 --tag --compress 'seq {} | pv -q -L 10'

6
testsuite/tests-to-run/parallel-local5.sh
View file

@ -6,6 +6,12 @@ seq 1 1000000 >/tmp/parallel-seq
shuf --random-source=/tmp/parallel-seq /tmp/parallel-seq >/tmp/blocktest
cat <<'EOF' | sed -e s/\$SERVER1/$SERVER1/\;s/\$SERVER2/$SERVER2/ | parallel -vj2 -k --joblog /tmp/jl-`basename $0` -L1
echo '### -L >4GB'
(head -c 5000000000 /dev/zero; echo FOO;
head -c 3000000000 /dev/zero; echo FOO;
head -c 1000000000 /dev/zero;) |
parallel --pipe -L2 --block 1g -k LANG=c wc -c
echo '### Test 200M records with too small block';
(
echo start;

9
testsuite/wanted-results/parallel-local114
View file

@ -1,3 +1,12 @@
echo '### bug #44358: 2 GB records cause problems for -N2'
### bug #44358: 2 GB records cause problems for -N2
(yes "`echo {1..100}`" | head -c 5000000000; echo FOO; yes "`echo {1..100}`" | head -c 3000000000; echo FOO; yes "`echo {1..100}`" | head -c 1000000000;) | parallel --pipe --recend FOO'\n' --block 1g -k LANG=c wc -c
5000000004
3000000004
1000000000
parallel: Warning: A record was longer than 1000000000. Increasing to --blocksize 1300000001
parallel: Warning: A record was longer than 1300000001. Increasing to --blocksize 1690000003
parallel: Warning: A record was longer than 1690000003. Increasing to --blocksize 2147483647
echo "### --line-buffer"
### --line-buffer
seq 10 | parallel -j20 --line-buffer 'seq {} 10 | pv -qL 10' > /tmp/parallel_l$$; seq 10 | parallel -j20 'seq {} 10 | pv -qL 10' > /tmp/parallel_$$; cat /tmp/parallel_l$$ | wc; diff /tmp/parallel_$$ /tmp/parallel_l$$ >/dev/null ; echo These must diff: $?; rm /tmp/parallel_l$$ /tmp/parallel_$$

5
testsuite/wanted-results/parallel-local19
View file

@ -55,6 +55,11 @@ rm -- 2-col/abc-2-col-2-col.txt
rm -- a/abc-a-a
rm -- b/abc-b-b
rm -- \ä\¸\­\å\›\½\ \(Zh\Å\<5C>nggu\Ã\³\)/abc-\ä\¸\­\å\›\½\ \(Zh\Å\<5C>nggu\Ã\³\)-\ä\¸\­\å\›\½\ \(Zh\Å\<5C>nggu\Ã\³\)
echo '### bug #44358: 2 GB records cause problems for -N2'
### bug #44358: 2 GB records cause problems for -N2
(yes "`echo {1..100}`" | head -c 5000000000; echo FOO; yes "`echo {1..100}`" | head -c 3000000000; echo FOO; yes "`echo {1..100}`" | head -c 1000000000;) | parallel --pipe --recend FOO'\n' -N2 --block 1g -k LANG=c wc -c
8000000008
1000000000
echo '### Test compress'
### Test compress
seq 5 | parallel -j2 --tag --compress 'seq {} | pv -q -L 10'

5
testsuite/wanted-results/parallel-local5
View file

@ -1,4 +1,9 @@
### Test --pipe
echo '### -L >4GB'
### -L >4GB
(head -c 5000000000 /dev/zero; echo FOO; head -c 3000000000 /dev/zero; echo FOO; head -c 1000000000 /dev/zero;) | parallel --pipe -L2 --block 1g -k LANG=c wc -c
8000000008
1000000000
echo '### Test 200M records with too small block'; ( echo start; seq 1 44 | parallel -uj1 cat /tmp/blocktest\;true; echo end; echo start; seq 1 44 | parallel -uj1 cat /tmp/blocktest\;true; echo end; echo start; seq 1 44 | parallel -uj1 cat /tmp/blocktest\;true; echo end; ) | stdout parallel -k --block 200m -j2 --pipe --recend 'end\n' wc -c | egrep -v '^0$'
### Test 200M records with too small block
parallel: Warning: A record was longer than 200000000. Increasing to --blocksize 260000001