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Released as 20150622 ('Løkke')

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Ole Tange 2015-06-22 21:23:26 +02:00
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144
NEWS
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@ -1,38 +1,148 @@
20150622
* --halt has been rewritten completely. You can now combine
percentages with success or fail. See the man page.
* Exit values 102..254 have been removed. 101 means more than 100 jobs
failed.
* Killing through --timeout, --memfree, or --halt is now done as a
process group.
* --termseq determines which signals are sent when a job is killed.
* An empty argument would previously cause no string to be
inserted. This is now changed to '' being inserted, thus prepending
a space to the output of: parallel echo {} b ::: ''
* $PARALLEL_ENV can now be set to an environment prepending the
command. Used in env_parallel as mentioned in the manpage.
* --retry-failed will retry all failed jobs in a joblog. It will
ignore any command given.
* --ssh and $PARALLEL_SSH can be used to set the command used for
ssh. The command is assumed to behave the same way as ssh.
* --fifo now works in csh, too.
* Q(...) can be used in {= =} to shell quote a string.
* GNU Parallel was cited in: Contrasting regional architectures of
schizophrenia and other complex diseases using fast variance
components analysis
http://biorxiv.org/content/biorxiv/early/2015/06/05/016527.full.pdf
* GNU Parallel was cited in: DockBench: An Integrated Informatic
Platform Bridging the Gap between the Robust Validation of Docking
Protocols and Virtual Screening Simulations
http://www.mdpi.com/1420-3049/20/6/9977
* GNU Parallel was cited in: Swedes Online: You Are More Tracked Than
You Think
http://www.diva-portal.org/smash/get/diva2:807623/FULLTEXT01.pdf
* GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D
scattering and resonance calculations
http://arxiv.org/pdf/1505.07691.pdf
* GNU Parallel was cited in: A quantitative assessment of the Hadoop
framework for analyzing massively parallel DNA sequencing data
http://link.springer.com/article/10.1186/s13742-015-0058-5
* GNU Parallel was cited in: A composite genome approach to identify
phylogenetically informative data from next-generation sequencing
http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf
* GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D
scattering and resonance calculations
http://arxiv.org/pdf/1505.07691.pdf
* GNU Parallel is used in: taxator-tk
http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/
* GNU Parallel is used in: https://github.com/d2207197/local-mapreduce
* GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news
* GNU Parallel is used in: A Fingerprint Identification System
https://curve.carleton.ca/system/files/theses/28733.pdf
* Job ad asking for GNU Parallel experience:
http://searchjobs.intel.com/gdansk-pol/software-validation-engineer/63A06826DAF24797AB414DC146201C2E/job/
* Using BLAT http://wangzhengyuan.blogspot.dk/2015/06/using-blat.html
* Bug fixes and man page updates.
20150522 20150522
* Security: The security issue for --sshlogin + --fifo/--cat has been fixed. Thereby all issues with http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html have been fixed. * Security: The security issue for --sshlogin + --fifo/--cat has been
fixed. Thereby all issues with
http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html
have been fixed.
* Security: After further security analysis the issue fixed in 20150422 also fixed the problem for --tmux. * Security: After further security analysis the issue fixed in
20150422 also fixed the problem for --tmux.
* GNU Parallel was cited in: CIDER: a pipeline for detecting waves of coordinated transcriptional regulation in gene expression time-course data http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf * GNU Parallel was cited in: CIDER: a pipeline for detecting waves of
coordinated transcriptional regulation in gene expression
time-course data
http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
* GNU Parallel was cited in: Building Genomic Analysis Pipelines in a Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics, Metagenomics and RNA-seq http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf * GNU Parallel was cited in: Building Genomic Analysis Pipelines in a
Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics,
Metagenomics and RNA-seq
http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf
* GNU Parallel was cited in: Toward Enhanced Metadata Quality of Large-Scale Digital Libraries: Estimating Volume Time Range https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf * GNU Parallel was cited in: Toward Enhanced Metadata Quality of
Large-Scale Digital Libraries: Estimating Volume Time Range
https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
* GNU Parallel was cited in: Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf * GNU Parallel was cited in: Sequencing the cap-snatching repertoire
of H1N1 influenza provides insight into the mechanism of viral
transcription initiation
http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf
* GNU Parallel was cited in: Genome assembly using Nanopore-guided long and error-free DNA reads http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf * GNU Parallel was cited in: Genome assembly using Nanopore-guided
long and error-free DNA reads
http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf
* GNU Parallel was cited in: Contrasting regional architectures of schizophrenia and other complex diseases using fast variance components analysis http://biorxiv.org/content/biorxiv/early/2015/03/13/016527.full.pdf * GNU Parallel was cited in: Contrasting regional architectures of
schizophrenia and other complex diseases using fast variance
components analysis
http://biorxiv.org/content/biorxiv/early/2015/03/13/016527.full.pdf
* GNU Parallel was used (unfortunately with wrong citation) in: Comparing the CarbonTracker and TM5-4DVar data assimilation systems for CO2 surface flux inversions http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html * GNU Parallel was used (unfortunately with wrong citation) in:
Comparing the CarbonTracker and TM5-4DVar data assimilation systems
for CO2 surface flux inversions
http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
* GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method https://bitbucket.org/srp33/gsoa * GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method
https://bitbucket.org/srp33/gsoa
* A Quick and Neat :) Orchestrator using GNU Parallel http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/ * A Quick and Neat :) Orchestrator using GNU Parallel
http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/
* Execute commands on multiple computers using GNU Parallel (setting up a cluster on the cheap) https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/ * Execute commands on multiple computers using GNU Parallel (setting
up a cluster on the cheap)
https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/
* Functions and GNU parallel for effective cluster load management http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html * Functions and GNU parallel for effective cluster load management
http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html
* Use parallel processing to save time importing databases http://drupalsun.com/node/41854 * Use parallel processing to save time importing databases
http://drupalsun.com/node/41854
* Run multiple ssh commands in parallel with GNU Parallel http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html * Run multiple ssh commands in parallel with GNU Parallel
http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html
* Importing huge databases faster https://www.lullabot.com/blog/article/importing-huge-databases-faster * Importing huge databases faster
https://www.lullabot.com/blog/article/importing-huge-databases-faster
* Run multiple ssh commands in parallel with GNU Parallel https://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html/comment-page-1 * Run multiple ssh commands in parallel with GNU Parallel
https://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html/comment-page-1
* Parallel? Gnu parallel! https://debian.pro/1834 * Parallel? Gnu parallel! https://debian.pro/1834

12
README
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@ -40,9 +40,9 @@ document.
Full installation of GNU Parallel is as simple as: Full installation of GNU Parallel is as simple as:
wget http://ftpmirror.gnu.org/parallel/parallel-20150607.tar.bz2 wget http://ftpmirror.gnu.org/parallel/parallel-20150622.tar.bz2
bzip2 -dc parallel-20150607.tar.bz2 | tar xvf - bzip2 -dc parallel-20150622.tar.bz2 | tar xvf -
cd parallel-20150607 cd parallel-20150622
./configure && make && sudo make install ./configure && make && sudo make install
@ -51,9 +51,9 @@ Full installation of GNU Parallel is as simple as:
If you are not root you can add ~/bin to your path and install in If you are not root you can add ~/bin to your path and install in
~/bin and ~/share: ~/bin and ~/share:
wget http://ftpmirror.gnu.org/parallel/parallel-20150607.tar.bz2 wget http://ftpmirror.gnu.org/parallel/parallel-20150622.tar.bz2
bzip2 -dc parallel-20150607.tar.bz2 | tar xvf - bzip2 -dc parallel-20150622.tar.bz2 | tar xvf -
cd parallel-20150607 cd parallel-20150622
./configure --prefix=$HOME && make && make install ./configure --prefix=$HOME && make && make install
Or if your system lacks 'make' you can simply copy src/parallel Or if your system lacks 'make' you can simply copy src/parallel

20
configure vendored
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@ -1,6 +1,6 @@
#! /bin/sh #! /bin/sh
# Guess values for system-dependent variables and create Makefiles. # Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for parallel 20150607. # Generated by GNU Autoconf 2.69 for parallel 20150622.
# #
# Report bugs to <bug-parallel@gnu.org>. # Report bugs to <bug-parallel@gnu.org>.
# #
@ -579,8 +579,8 @@ MAKEFLAGS=
# Identity of this package. # Identity of this package.
PACKAGE_NAME='parallel' PACKAGE_NAME='parallel'
PACKAGE_TARNAME='parallel' PACKAGE_TARNAME='parallel'
PACKAGE_VERSION='20150607' PACKAGE_VERSION='20150622'
PACKAGE_STRING='parallel 20150607' PACKAGE_STRING='parallel 20150622'
PACKAGE_BUGREPORT='bug-parallel@gnu.org' PACKAGE_BUGREPORT='bug-parallel@gnu.org'
PACKAGE_URL='' PACKAGE_URL=''
@ -1203,7 +1203,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing. # Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh. # This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF cat <<_ACEOF
\`configure' configures parallel 20150607 to adapt to many kinds of systems. \`configure' configures parallel 20150622 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]... Usage: $0 [OPTION]... [VAR=VALUE]...
@ -1269,7 +1269,7 @@ fi
if test -n "$ac_init_help"; then if test -n "$ac_init_help"; then
case $ac_init_help in case $ac_init_help in
short | recursive ) echo "Configuration of parallel 20150607:";; short | recursive ) echo "Configuration of parallel 20150622:";;
esac esac
cat <<\_ACEOF cat <<\_ACEOF
@ -1345,7 +1345,7 @@ fi
test -n "$ac_init_help" && exit $ac_status test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then if $ac_init_version; then
cat <<\_ACEOF cat <<\_ACEOF
parallel configure 20150607 parallel configure 20150622
generated by GNU Autoconf 2.69 generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc. Copyright (C) 2012 Free Software Foundation, Inc.
@ -1362,7 +1362,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake. running configure, to aid debugging if configure makes a mistake.
It was created by parallel $as_me 20150607, which was It was created by parallel $as_me 20150622, which was
generated by GNU Autoconf 2.69. Invocation command line was generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@ $ $0 $@
@ -2225,7 +2225,7 @@ fi
# Define the identity of the package. # Define the identity of the package.
PACKAGE='parallel' PACKAGE='parallel'
VERSION='20150607' VERSION='20150622'
cat >>confdefs.h <<_ACEOF cat >>confdefs.h <<_ACEOF
@ -2867,7 +2867,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their # report actual input values of CONFIG_FILES etc. instead of their
# values after options handling. # values after options handling.
ac_log=" ac_log="
This file was extended by parallel $as_me 20150607, which was This file was extended by parallel $as_me 20150622, which was
generated by GNU Autoconf 2.69. Invocation command line was generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES CONFIG_FILES = $CONFIG_FILES
@ -2929,7 +2929,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\ ac_cs_version="\\
parallel config.status 20150607 parallel config.status 20150622
configured by $0, generated by GNU Autoconf 2.69, configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\" with options \\"\$ac_cs_config\\"

2
configure.ac
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@ -1,4 +1,4 @@
AC_INIT([parallel], [20150607], [bug-parallel@gnu.org]) AC_INIT([parallel], [20150622], [bug-parallel@gnu.org])
AM_INIT_AUTOMAKE([-Wall -Werror foreign]) AM_INIT_AUTOMAKE([-Wall -Werror foreign])
AC_CONFIG_HEADERS([config.h]) AC_CONFIG_HEADERS([config.h])
AC_CONFIG_FILES([ AC_CONFIG_FILES([

20
doc/release_new_version
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@ -4,7 +4,7 @@
Check that documentation is updated (compare to web): Check that documentation is updated (compare to web):
Fixet for 20150522 Fixet for 20150622
git diff last-release-commit git diff last-release-commit
Unmodified beta since last version => production Unmodified beta since last version => production
Unmodified alpha since last version => beta Unmodified alpha since last version => beta
@ -213,6 +213,8 @@ Subject: GNU Parallel 20150622 ('Løkke') released
GNU Parallel 20150622 ('Løkke') has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/ GNU Parallel 20150622 ('Løkke') has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/
A performance chart has been made to compare the performance of different versions: http://www.gnu.org/software/parallel/boxplot-j2-3.0ghz-3000-1000.pdf The recent jump is due to every job being wrapped in a Perl-script doing setpgrp.
Haiku of the month: Haiku of the month:
Programs very slow. Programs very slow.
@ -222,12 +224,16 @@ Haiku of the month:
New in this release: New in this release:
* An empty argument would previously cause no string to be inserted. This is now changed to '' being inserted, thus prepending a space to the output of: parallel echo {} b ::: ''
* --halt has been rewritten completely. You can now combine percentages with success or fail. See the man page. * --halt has been rewritten completely. You can now combine percentages with success or fail. See the man page.
* Exit values 102..254 have been removed. 101 means more than 100 jobs failed. * Exit values 102..254 have been removed. 101 means more than 100 jobs failed.
* Killing through --timeout, --memfree, or --halt is now done as a process group (whence the setpgrp wrapper).
* --termseq determines which signals are sent when a job is killed.
* An empty argument would previously cause no string to be inserted. This is now changed to '' being inserted, thus prepending a space to the output of: parallel echo {} b ::: ''
* $PARALLEL_ENV can now be set to an environment prepending the command. Used in env_parallel as mentioned in the manpage. * $PARALLEL_ENV can now be set to an environment prepending the command. Used in env_parallel as mentioned in the manpage.
* --retry-failed will retry all failed jobs in a joblog. It will ignore any command given. * --retry-failed will retry all failed jobs in a joblog. It will ignore any command given.
@ -236,7 +242,7 @@ New in this release:
* --fifo now works in csh, too. * --fifo now works in csh, too.
* Killing through --timeout, --memfree, or --halt is now done as a process group. * Q(...) can be used in {= =} to shell quote a string.
* GNU Parallel was cited in: Contrasting regional architectures of schizophrenia and other complex diseases using fast variance components analysis http://biorxiv.org/content/biorxiv/early/2015/06/05/016527.full.pdf * GNU Parallel was cited in: Contrasting regional architectures of schizophrenia and other complex diseases using fast variance components analysis http://biorxiv.org/content/biorxiv/early/2015/06/05/016527.full.pdf
@ -256,12 +262,12 @@ New in this release:
* <<Afventer updateret publisering>> GNU Parallel was used in: Large Scale Author Name Disambiguation in Digital Libraries http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7004487&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7004487 * <<Afventer updateret publisering>> GNU Parallel was used in: Large Scale Author Name Disambiguation in Digital Libraries http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7004487&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7004487
* <<kontaktet 2015-05-09>> GNU Parallel was used (unfortunately with wrong citation) in: TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics http://vruehle.de/publications/2015c.pdf * <<kontaktet 2015-06-22>> GNU Parallel was used (unfortunately with wrong citation) in: TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics http://vruehle.de/publications/2015c.pdf
* taxator-tk http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/ (check it)
* << Update forventet juni Rachel har lige svaret >> GNU Parallel was used in: SISRS: Site Identification from Short Read Sequences https://github.com/rachelss/SISRS/ * << Update forventet juni Rachel har lige svaret >> GNU Parallel was used in: SISRS: Site Identification from Short Read Sequences https://github.com/rachelss/SISRS/
* GNU Parallel is used in: taxator-tk http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/
* GNU Parallel is used in: https://github.com/d2207197/local-mapreduce * GNU Parallel is used in: https://github.com/d2207197/local-mapreduce
* GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news * GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news

2
packager/obs/home:tange/parallel/parallel.spec
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@ -1,6 +1,6 @@
Summary: Shell tool for executing jobs in parallel Summary: Shell tool for executing jobs in parallel
Name: parallel Name: parallel
Version: 20150522 Version: 20150622
Release: 1 Release: 1
License: GPL License: GPL
Group: Productivity/File utilities Group: Productivity/File utilities

2
src/niceload
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@ -24,7 +24,7 @@
use strict; use strict;
use Getopt::Long; use Getopt::Long;
$Global::progname="niceload"; $Global::progname="niceload";
$Global::version = 20150607; $Global::version = 20150622;
Getopt::Long::Configure("bundling","require_order"); Getopt::Long::Configure("bundling","require_order");
get_options_from_array(\@ARGV) || die_usage(); get_options_from_array(\@ARGV) || die_usage();
if($opt::version) { if($opt::version) {

8
src/parallel
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@ -1079,7 +1079,7 @@ sub parse_options {
sub init_globals { sub init_globals {
# Defaults: # Defaults:
$Global::version = 20150620; $Global::version = 20150622;
$Global::progname = 'parallel'; $Global::progname = 'parallel';
$Global::infinity = 2**31; $Global::infinity = 2**31;
$Global::debug = 0; $Global::debug = 0;
@ -6429,6 +6429,7 @@ sub wrapped {
if($ENV{'PARALLEL_ENV'}) { if($ENV{'PARALLEL_ENV'}) {
# If $PARALLEL_ENV set, put that in front of the command # If $PARALLEL_ENV set, put that in front of the command
# Used for importing functions for fish # Used for importing functions for fish
# Map \001 to \n to make it easer to quote \n in $PARALLEL_ENV
$ENV{'PARALLEL_ENV'} =~ s/\001/\n/g; $ENV{'PARALLEL_ENV'} =~ s/\001/\n/g;
$command = $ENV{'PARALLEL_ENV'}."\n".$command; $command = $ENV{'PARALLEL_ENV'}."\n".$command;
} }
@ -7074,8 +7075,9 @@ sub start {
local (*OUT,*ERR); local (*OUT,*ERR);
open OUT, '>&', $stdout_fh or ::die_bug("Can't dup STDOUT: $!"); open OUT, '>&', $stdout_fh or ::die_bug("Can't dup STDOUT: $!");
open ERR, '>&', $stderr_fh or ::die_bug("Can't dup STDERR: $!"); open ERR, '>&', $stderr_fh or ::die_bug("Can't dup STDERR: $!");
$pid = ::open3("<&IN", ">&OUT", ">&ERR", $pid = ::open3("<&IN", ">&OUT", ">&ERR",
"exec $Global::shell -c ".::shell_quote_scalar_default($command)) || "exec $Global::shell -c ".
::shell_quote_scalar_default($command)) ||
::die_bug("open3-/dev/tty"); ::die_bug("open3-/dev/tty");
$Global::tty_taken = $pid; $Global::tty_taken = $pid;
close $devtty_fh; close $devtty_fh;

13
src/parallel.pod
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@ -306,7 +306,8 @@ Replace with calculated I<perl expression>. B<$_> will contain the
same as B<{}>. After evaluating I<perl expression> B<$_> will be used same as B<{}>. After evaluating I<perl expression> B<$_> will be used
as the value. It is recommended to only change $_ but you have full as the value. It is recommended to only change $_ but you have full
access to all of GNU B<parallel>'s internal functions and data access to all of GNU B<parallel>'s internal functions and data
structures. structures. You can use the function B<Q(>I<string>B<)> to shell quote
a string.
The B<{=>I<perl expression>B<=}> must be given as a single string. The B<{=>I<perl expression>B<=}> must be given as a single string.
@ -501,7 +502,7 @@ I<size> defaults to 1M.
See B<--pipe> and B<--pipepart> for use of this. See B<--pipe> and B<--pipepart> for use of this.
=item B<--cat> =item B<--cat> (alpha testing)
Create a temporary file with content. Normally B<--pipe>/B<--pipepart> Create a temporary file with content. Normally B<--pipe>/B<--pipepart>
will give data to the program on stdin (standard input). With B<--cat> will give data to the program on stdin (standard input). With B<--cat>
@ -694,7 +695,7 @@ Implies B<--semaphore>.
See also B<--bg>, B<man sem>. See also B<--bg>, B<man sem>.
=item B<--fifo> =item B<--fifo> (alpha testing)
Create a temporary fifo with content. Normally B<--pipe> and Create a temporary fifo with content. Normally B<--pipe> and
B<--pipepart> will give data to the program on stdin (standard B<--pipepart> will give data to the program on stdin (standard
@ -1735,7 +1736,7 @@ Does not run the command but quotes it. Useful for making quoted
composed commands for GNU B<parallel>. composed commands for GNU B<parallel>.
=item B<--shuf> (alpha testing) =item B<--shuf> (beta testing)
Shuffle jobs. When having multiple input sources it is hard to Shuffle jobs. When having multiple input sources it is hard to
randomize jobs. --shuf will generate all jobs, and shuffle them before randomize jobs. --shuf will generate all jobs, and shuffle them before
@ -1919,8 +1920,8 @@ B<--tagstring> is ignored when using B<-u>, B<--onall>, and B<--nonall>.
=item B<--termseq> I<sequence> (alpha testing) =item B<--termseq> I<sequence> (alpha testing)
Termination sequence. When a job is killed due to B<--timeout>, Termination sequence. When a job is killed due to B<--timeout>,
B<--memfree>, or abnormal termination of GNU B<parallel>, I<sequence> B<--memfree>, B<--halt>, or abnormal termination of GNU B<parallel>,
determines how the job is killed. The default is: I<sequence> determines how the job is killed. The default is:
TERM,200,TERM,100,TERM,50,KILL,25 TERM,200,TERM,100,TERM,50,KILL,25

2
src/sql
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@ -566,7 +566,7 @@ $Global::Initfile && unlink $Global::Initfile;
exit ($err); exit ($err);
sub parse_options { sub parse_options {
$Global::version = 20150607; $Global::version = 20150622;
$Global::progname = 'sql'; $Global::progname = 'sql';
# This must be done first as this may exec myself # This must be done first as this may exec myself