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testsuite: Automatic test of command in parallel_tutorial.pod.x
This commit is contained in:
Ole Tange
parent
0094c81f9b
commit
338ea44e27
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@ -223,6 +223,12 @@ New in this release:
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* GNU Parallel was cited in: Bayesian inference of protein structure from chemical shift data https://peerj.com/articles/861/
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* GNU Parallel was cited in: Toward Enhanced Metadata Quality of Large-Scale Digital Libraries: Estimating Volume Time Range https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
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* GNU Parallel was cited in: Contrasting regional architectures of schizophrenia and other complex diseases using fast variance components analysis http://biorxiv.org/content/biorxiv/early/2015/03/13/016527.full.pdf
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* GNU Parallel was cited in: Experimental study on the Wind Farm Substation Cable Installation Problem http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf
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* <<afventer>> Comparing the CarbonTracker and TM5-4DVar data assimilation systems for CO2 surface flux inversions http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
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* <<afventer opdatering>> CIDER: a pipeline for detecting waves of coordinated transcriptional regulation in gene expression time-course data http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
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@ -235,8 +241,16 @@ taxator-tk http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/ (check it)
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* GNU Parallel was used in: https://github.com/exascience/elprep
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* GNU Parallel was used in: http://search.cpan.org/~jillrowe/HPC-Runner-GnuParallel-0.01/
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* GNU Parallel was used in: http://search.cpan.org/~ajpage/Bio-Roary-2.0.7/lib/Bio/Roary/JobRunner/Parallel.pm
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* Pictures and Metadata http://www.ozzy.no/2015/02/05/pictures-and-metadata/
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* Task automation with bash and parallel https://biowize.wordpress.com/2015/03/23/task-automation-with-bash-and-parallel/
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* Mirroring a Git Repository https://avacariu.me/articles/mirroring-a-git-repository.html
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* Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/
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* GNU Parallel (Sebuah Uji Coba) http://kaka.prakasa.my.id/2014/09/04/gnu-parallel-sebuah-uji-coba/
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30
src/parallel
30
src/parallel
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@ -489,7 +489,8 @@ sub nindex {
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# until one is empty and a new block is passed
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# Make a queue to spread the blocks evenly
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if(not @robin_queue) {
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push @robin_queue, values %Global::running;
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push @robin_queue, (sort { $a->seq() <=> $b->seq() }
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values %Global::running);
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}
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while(my $job = shift @robin_queue) {
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if($job->stdin_buffer_length() > 0) {
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@ -2879,28 +2880,31 @@ sub save_original_signal_handler {
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# Uses:
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# %Global::original_sig
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# Returns: N/A
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$SIG{TERM} ||= sub { exit 0; }; # $SIG{TERM} is not set on Mac OS X
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$SIG{INT} = sub { if($opt::tmux) { qx { tmux kill-session -t p$$ }; }
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unlink keys %Global::unlink; exit -1 };
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$SIG{TERM} = sub { if($opt::tmux) { qx { tmux kill-session -t p$$ }; }
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unlink keys %Global::unlink; exit -1 };
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%Global::original_sig = %SIG;
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$SIG{TERM} = sub {}; # Dummy until jobs really start
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# When a child dies, wake up from sleep (or select(,,,))
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$SIG{CHLD} = sub { kill "ALRM", $$ };
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$SIG{ALRM} = 'IGNORE';
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}
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sub list_running_jobs {
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# Print running jobs on tty
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# Uses:
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# %Global::running
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# Returns: N/A
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for my $v (values %Global::running) {
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::status("$Global::progname: ",$v->replaced(),"\n");
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for my $job (values %Global::running) {
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::status("$Global::progname: ",$job->replaced(),"\n");
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}
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}
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sub start_no_new_jobs {
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# Start no more jobs
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# Uses:
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# %Global::original_sig
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# %Global::unlink
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# $Global::start_no_new_jobs
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# Returns: N/A
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$SIG{TERM} = $Global::original_sig{TERM};
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unlink keys %Global::unlink;
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@ -2926,7 +2930,8 @@ sub reaper {
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# $opt::halt
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# $opt::keeporder
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# $Global::total_running
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# Returns: N/A
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# Returns:
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# $children_reaped = number of children finished
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my $stiff;
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my $children_reaped = 0;
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debug("run", "Reaper ");
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@ -2955,7 +2960,7 @@ sub reaper {
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push @Global::slots, $job->slot();
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if($opt::timeout) {
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# Update average runtime for timeout
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$Global::timeoutq->update_delta_time($job->runtime());
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$Global::timeoutq->update_median_runtime($job->runtime());
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}
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# Force printing now if --halt forces us to exit
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my $print_now =
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@ -3547,7 +3552,11 @@ sub reap_usleep {
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if($opt::memfree) {
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kill_youngster_if_not_enough_mem();
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}
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# When a child dies, wake up from sleep (or select(,,,))
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$SIG{CHLD} = sub { kill "ALRM", $$ };
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usleep($ms);
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# --compress needs $SIG{CHLD} undefined
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$SIG{CHLD} = undef;
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exit_if_disk_full();
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if($opt::linebuffer) {
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for my $job (values %Global::running) {
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@ -3564,6 +3573,8 @@ sub kill_youngster_if_not_enough_mem {
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# Check each $sshlogin if there is enough mem.
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# If less than 50% enough free mem: kill off the youngest child
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# Put the child back in the queue.
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# Uses:
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# %Global::running
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my %jobs_of;
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my @sshlogins;
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@ -3753,7 +3764,6 @@ sub string {
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sub jobs_running {
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my $self = shift;
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return ($self->{'jobs_running'} || "0");
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}
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@ -8707,7 +8717,7 @@ sub set_remedian {
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$self->{'remedian'} = (sort @{$rref->[2]})[$#{$rref->[2]}/2];
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}
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sub update_delta_time {
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sub update_median_runtime {
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# Update delta_time based on runtime of finished job if timeout is
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# a percentage
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my $self = shift;
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@ -165,6 +165,14 @@
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<pre><code> perl -e 'printf "f1\tf2\nA\tB\nC\tD\n"' > tsv-file.tsv</code></pre>
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</dd>
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<dt id="num8">num8</dt>
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<dd>
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<p>The file can be generated by:</p>
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<pre><code> perl -e 'for(1..8){print "$_\n"}' > num8</code></pre>
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</dd>
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<dt id="num128">num128</dt>
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<dd>
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@ -1058,7 +1066,7 @@
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<p>Instead of basing the percentage on the number of CPU cores GNU Parallel can base it on the number of CPUs:</p>
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<pre><code> parallel --use-cpus-instead-of-cores -N0 sleep 1 :::: num128</code></pre>
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<pre><code> parallel --use-cpus-instead-of-cores -N0 sleep 1 :::: num8</code></pre>
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<h2 id="Interactivity">Interactivity</h2>
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@ -1086,7 +1094,7 @@
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<p>Using tmux GNU Parallel can start a terminal for every job run:</p>
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<pre><code> seq 10 40 | parallel --tmux 'echo start {}; sleep {}; echo done {}'</code></pre>
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<pre><code> seq 10 20 | parallel --tmux 'echo start {}; sleep {}; echo done {}'</code></pre>
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<p>This will tell you to run something similar to:</p>
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@ -1431,8 +1439,7 @@
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<p>Some jobs need a common database for all jobs. GNU Parallel can transfer that using --basefile which will transfer the file before the first job:</p>
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<pre><code> echo common data > common_file
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parallel --basefile common_file -S $SERVER1 cat common_file\; echo {} ::: foo
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</code></pre>
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parallel --basefile common_file -S $SERVER1 cat common_file\; echo {} ::: foo</code></pre>
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<p>Output:</p>
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@ -58,6 +58,12 @@ The file can be generated by:
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perl -e 'printf "f1\tf2\nA\tB\nC\tD\n"' > tsv-file.tsv
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=item num8
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The file can be generated by:
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perl -e 'for(1..8){print "$_\n"}' > num8
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=item num128
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The file can be generated by:
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@ -988,7 +994,7 @@ parallel.
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Instead of basing the percentage on the number of CPU cores
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GNU Parallel can base it on the number of CPUs:
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parallel --use-cpus-instead-of-cores -N0 sleep 1 :::: num128
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parallel --use-cpus-instead-of-cores -N0 sleep 1 :::: num8
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=head2 Interactivity
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@ -1017,7 +1023,7 @@ Or give multiple argument in one go to open multiple files:
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Using tmux GNU Parallel can start a terminal for every job run:
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seq 10 40 | parallel --tmux 'echo start {}; sleep {}; echo done {}'
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seq 10 20 | parallel --tmux 'echo start {}; sleep {}; echo done {}'
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This will tell you to run something similar to:
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@ -4,31 +4,26 @@ testsuite: 3
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3: ../src/parallel tests-to-run/* wanted-results/* startdb prereqlocal prereqremote
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TRIES=3 time sh Start.sh - mem || true
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touch ~/.parallel/will-cite
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date
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make stopvm
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1: ../src/parallel tests-to-run/* wanted-results/* prereqlocal startdb prereqremote
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time sh Start.sh - mem || true
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touch ~/.parallel/will-cite
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date
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make stopvm
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mem: ../src/parallel tests-to-run/*mem* wanted-results/*mem* prereqlocal
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time sh Start.sh mem NONE || true
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touch ~/.parallel/will-cite
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date
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make stopvm
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testdb: ../src/parallel tests-to-run/*sql* wanted-results/*sql* prereqdb
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time sh Start.sh sql NONE
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date
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local: testlocal
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true
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testlocal: ../src/parallel tests-to-run/*local* wanted-results/*local* prereqlocal installparallel
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time sh Start.sh local NONE
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date
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prereqlocal: installparallel
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tcsh -c echo tcsh installed || (echo tcsh is required for testsuite; /bin/false)
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@ -23,6 +23,7 @@ else
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>$SHFILE
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fi
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date
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mkdir -p actual-results
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stdout sh -x $SHFILE | tee testsuite.log
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rm $SHFILE
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@ -35,4 +36,4 @@ else
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cp -a ../src src-passing-testsuite
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fi
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rm testsuite.log
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date
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@ -33,7 +33,7 @@ copy_and_test() {
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echo '### Run the test on '$H
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cat `which parallel` |
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stdout ssh -oLogLevel=quiet $H 'cat > bin/p.tmp && chmod 755 bin/p.tmp && mv bin/p.tmp bin/parallel && bin/perl bin/parallel echo Works on {} ::: '$H'; bin/perl bin/parallel --tmpdir / echo ::: test read-only tmp' |
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perl -pe 's:/[a-z0-9_]+.arg:/XXXXXXXX.arg:gi'
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perl -pe 's:/[a-z0-9_]+.arg:/XXXXXXXX.arg:gi; s/\d\d\d\d/0000/gi;'
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}
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export -f copy_and_test
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stdout parallel -j0 -k --retries 5 --timeout 80 --delay 0.1 --tag -v copy_and_test {} ::: $POLAR
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45
testsuite/tests-to-run/parallel-tutorial.sh
Normal file
45
testsuite/tests-to-run/parallel-tutorial.sh
Normal file
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@ -0,0 +1,45 @@
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#!/bin/bash
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cd testsuite 2>/dev/null
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mkdir -p tmp
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cd tmp
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echo '### test parallel_tutorial'
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rm -f /tmp/runs
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export SERVER1=parallel@lo
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export SERVER2=csh@lo
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export PARALLEL=-k
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perl -ne '$/="\n\n"; /^Output/../^[^O]\S/ and next; /^ / and print;' ../../src/parallel_tutorial.pod |
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egrep -v 'curl|tty|parallel_tutorial|interactive|example.(com|net)|shellquote|works' |
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perl -pe 's/username@//;s/user@//;
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s/zenity/zenity --timeout=12/;
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s:/usr/bin/time:/usr/bin/time -f %e:;
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s:ignored_vars:ignored_vars|sort:;
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' |
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stdout bash -x |
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perl -pe '$|=1;
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# --files and --tmux
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s:/tmp/par......(...):/tmp/parXXXXX.$1:;
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# --eta --progress
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s/ETA.*//g; s/local:.*//g;
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# Sat Apr 4 11:55:40 CEST 2015
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s/... ... .. ..:..:.. \D+ ..../DATE OUTPUT/;
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# Timestamp from --joblog
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s/\d{10}.\d{3}\s+..\d+/TIMESTAMP\t9.999/g;
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# Remote script
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s/(PARALLEL_PID\D+)\d+/${1}000000/g;
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# /usr/bin/time -f %e
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s/^(\d+)\.\d+$/$1/;
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# Base 64 string
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s:[+/a-z0-9=]{50,}:BASE64:ig;
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# --workdir ...
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s:parallel/tmp/aspire-\d+-1:TMPWORKDIR:g;
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# + cat ... | (Bash outputs these in random order)
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s/\+ cat.*\n//;
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# + echo ... | (Bash outputs these in random order)
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s/\+ echo.*\n//;
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# + wc ... (Bash outputs these in random order)
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s/\+ wc.*\n//;
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# + command_X | (Bash outputs these in random order)
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s/.*command_[ABC].*\n//;
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'
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# parallel -d'\n\n'
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@ -5,107 +5,107 @@ minix.polarhome.com ### Run the test on minix.polarhome.com
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copy_and_test freebsd.polarhome.com
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freebsd.polarhome.com ### Run the test on freebsd.polarhome.com
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freebsd.polarhome.com Works on freebsd.polarhome.com
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freebsd.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198.
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freebsd.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000.
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copy_and_test solaris.polarhome.com
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solaris.polarhome.com ### Run the test on solaris.polarhome.com
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solaris.polarhome.com Works on solaris.polarhome.com
|
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solaris.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
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solaris.polarhome.com at bin/parallel line 3198
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solaris.polarhome.com at bin/parallel line 0000
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copy_and_test openbsd.polarhome.com
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openbsd.polarhome.com ### Run the test on openbsd.polarhome.com
|
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openbsd.polarhome.com Works on openbsd.polarhome.com
|
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openbsd.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
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openbsd.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
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copy_and_test netbsd.polarhome.com
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netbsd.polarhome.com ### Run the test on netbsd.polarhome.com
|
||||
netbsd.polarhome.com Works on netbsd.polarhome.com
|
||||
netbsd.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198.
|
||||
netbsd.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000.
|
||||
copy_and_test debian.polarhome.com
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debian.polarhome.com ### Run the test on debian.polarhome.com
|
||||
debian.polarhome.com Works on debian.polarhome.com
|
||||
debian.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
||||
debian.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
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copy_and_test aix.polarhome.com
|
||||
aix.polarhome.com ### Run the test on aix.polarhome.com
|
||||
aix.polarhome.com Works on aix.polarhome.com
|
||||
aix.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: The file access permissions do not allow the specified action. at bin/parallel line 3198
|
||||
aix.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: The file access permissions do not allow the specified action. at bin/parallel line 0000
|
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copy_and_test redhat.polarhome.com
|
||||
redhat.polarhome.com ### Run the test on redhat.polarhome.com
|
||||
redhat.polarhome.com Works on redhat.polarhome.com
|
||||
redhat.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
||||
redhat.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
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copy_and_test hpux.polarhome.com
|
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hpux.polarhome.com ### Run the test on hpux.polarhome.com
|
||||
hpux.polarhome.com Works on hpux.polarhome.com
|
||||
hpux.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
||||
hpux.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
||||
copy_and_test qnx.polarhome.com
|
||||
qnx.polarhome.com ### Run the test on qnx.polarhome.com
|
||||
qnx.polarhome.com parallel: Warning: Cannot figure out number of CPU cores. Using 1.
|
||||
qnx.polarhome.com Works on qnx.polarhome.com
|
||||
qnx.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
||||
qnx.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
||||
copy_and_test tru64.polarhome.com
|
||||
tru64.polarhome.com ### Run the test on tru64.polarhome.com
|
||||
tru64.polarhome.com Works on tru64.polarhome.com
|
||||
tru64.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
|
||||
tru64.polarhome.com at bin/parallel line 3198
|
||||
tru64.polarhome.com at bin/parallel line 0000
|
||||
copy_and_test openindiana.polarhome.com
|
||||
openindiana.polarhome.com ### Run the test on openindiana.polarhome.com
|
||||
openindiana.polarhome.com parallel: Warning: Cannot figure out number of CPU cores. Using 1.
|
||||
openindiana.polarhome.com Works on openindiana.polarhome.com
|
||||
openindiana.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
||||
openindiana.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
||||
copy_and_test suse.polarhome.com
|
||||
suse.polarhome.com ### Run the test on suse.polarhome.com
|
||||
suse.polarhome.com Works on suse.polarhome.com
|
||||
suse.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198.
|
||||
suse.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000.
|
||||
copy_and_test solaris-x86.polarhome.com
|
||||
solaris-x86.polarhome.com ### Run the test on solaris-x86.polarhome.com
|
||||
solaris-x86.polarhome.com Works on solaris-x86.polarhome.com
|
||||
solaris-x86.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
||||
solaris-x86.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
||||
copy_and_test mandriva.polarhome.com
|
||||
mandriva.polarhome.com ### Run the test on mandriva.polarhome.com
|
||||
mandriva.polarhome.com Works on mandriva.polarhome.com
|
||||
mandriva.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
||||
mandriva.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
||||
copy_and_test ubuntu.polarhome.com
|
||||
ubuntu.polarhome.com ### Run the test on ubuntu.polarhome.com
|
||||
ubuntu.polarhome.com Works on ubuntu.polarhome.com
|
||||
ubuntu.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198.
|
||||
ubuntu.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000.
|
||||
copy_and_test scosysv.polarhome.com
|
||||
scosysv.polarhome.com ### Run the test on scosysv.polarhome.com
|
||||
scosysv.polarhome.com Works on scosysv.polarhome.com
|
||||
scosysv.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
|
||||
scosysv.polarhome.com at bin/parallel line 3198
|
||||
scosysv.polarhome.com at bin/parallel line 0000
|
||||
copy_and_test unixware.polarhome.com
|
||||
unixware.polarhome.com ### Run the test on unixware.polarhome.com
|
||||
unixware.polarhome.com Works on unixware.polarhome.com
|
||||
unixware.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
||||
unixware.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
||||
copy_and_test dragonfly.polarhome.com
|
||||
dragonfly.polarhome.com ### Run the test on dragonfly.polarhome.com
|
||||
dragonfly.polarhome.com Works on dragonfly.polarhome.com
|
||||
dragonfly.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
||||
dragonfly.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
||||
copy_and_test centos.polarhome.com
|
||||
centos.polarhome.com ### Run the test on centos.polarhome.com
|
||||
centos.polarhome.com Works on centos.polarhome.com
|
||||
centos.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
|
||||
centos.polarhome.com at bin/parallel line 3198
|
||||
centos.polarhome.com at bin/parallel line 0000
|
||||
copy_and_test miros.polarhome.com
|
||||
miros.polarhome.com ### Run the test on miros.polarhome.com
|
||||
miros.polarhome.com Works on miros.polarhome.com
|
||||
miros.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
|
||||
miros.polarhome.com at bin/parallel line 3198
|
||||
miros.polarhome.com at bin/parallel line 0000
|
||||
copy_and_test hurd.polarhome.com
|
||||
hurd.polarhome.com ### Run the test on hurd.polarhome.com
|
||||
hurd.polarhome.com Works on hurd.polarhome.com
|
||||
hurd.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198.
|
||||
hurd.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000.
|
||||
copy_and_test raspbian.polarhome.com
|
||||
raspbian.polarhome.com ### Run the test on raspbian.polarhome.com
|
||||
raspbian.polarhome.com Works on raspbian.polarhome.com
|
||||
raspbian.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
||||
raspbian.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
||||
copy_and_test macosx.polarhome.com
|
||||
macosx.polarhome.com ### Run the test on macosx.polarhome.com
|
||||
macosx.polarhome.com Works on macosx.polarhome.com
|
||||
macosx.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3198
|
||||
macosx.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 0000
|
||||
copy_and_test hpux-ia64.polarhome.com
|
||||
hpux-ia64.polarhome.com ### Run the test on hpux-ia64.polarhome.com
|
||||
hpux-ia64.polarhome.com Works on hpux-ia64.polarhome.com
|
||||
hpux-ia64.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
|
||||
hpux-ia64.polarhome.com at bin/parallel line 3198
|
||||
hpux-ia64.polarhome.com at bin/parallel line 0000
|
||||
copy_and_test syllable.polarhome.com
|
||||
syllable.polarhome.com ### Run the test on syllable.polarhome.com
|
||||
syllable.polarhome.com chmod: changing permissions of `bin/p.tmp': Function not implemented
|
||||
|
|
|
|||
953
testsuite/wanted-results/parallel-tutorial
Normal file
953
testsuite/wanted-results/parallel-tutorial
Normal file
|
|
@ -0,0 +1,953 @@
|
|||
### test parallel_tutorial
|
||||
+ parallel -k echo ::: A B C
|
||||
+ parallel -k echo ::: D E F
|
||||
+ perl -e 'printf "A\0B\0C\0"'
|
||||
+ perl -e 'printf "A_B_C_"'
|
||||
+ perl -e 'printf "f1\tf2\nA\tB\nC\tD\n"'
|
||||
+ perl -e 'for(1..8){print "$_\n"}'
|
||||
+ perl -e 'for(1..128){print "$_\n"}'
|
||||
+ perl -e 'for(1..30000){print "$_\n"}'
|
||||
+ perl -e 'for(1..1000000){print "$_\n"}'
|
||||
+ perl -e 'for(1..10){print "$_\n"}'
|
||||
+ parallel echo ::: A B C
|
||||
A
|
||||
B
|
||||
C
|
||||
+ parallel -a abc-file echo
|
||||
A
|
||||
B
|
||||
C
|
||||
+ parallel echo
|
||||
A
|
||||
B
|
||||
C
|
||||
+ parallel echo ::: A B C ::: D E F
|
||||
A D
|
||||
A E
|
||||
A F
|
||||
B D
|
||||
B E
|
||||
B F
|
||||
C D
|
||||
C E
|
||||
C F
|
||||
+ parallel -a abc-file -a def-file echo
|
||||
A D
|
||||
A E
|
||||
A F
|
||||
B D
|
||||
B E
|
||||
B F
|
||||
C D
|
||||
C E
|
||||
C F
|
||||
+ parallel -a - -a def-file echo
|
||||
A D
|
||||
A E
|
||||
A F
|
||||
B D
|
||||
B E
|
||||
B F
|
||||
C D
|
||||
C E
|
||||
C F
|
||||
+ parallel echo :::: - def-file
|
||||
A D
|
||||
A E
|
||||
A F
|
||||
B D
|
||||
B E
|
||||
B F
|
||||
C D
|
||||
C E
|
||||
C F
|
||||
+ parallel echo ::: A B C :::: def-file
|
||||
A D
|
||||
A E
|
||||
A F
|
||||
B D
|
||||
B E
|
||||
B F
|
||||
C D
|
||||
C E
|
||||
C F
|
||||
+ parallel --xapply echo ::: A B C ::: D E F
|
||||
A D
|
||||
B E
|
||||
C F
|
||||
+ parallel --xapply echo ::: A B C D E ::: F G
|
||||
A F
|
||||
B G
|
||||
C F
|
||||
D G
|
||||
E F
|
||||
+ parallel --arg-sep ,, echo ,, A B C :::: def-file
|
||||
A D
|
||||
A E
|
||||
A F
|
||||
B D
|
||||
B E
|
||||
B F
|
||||
C D
|
||||
C E
|
||||
C F
|
||||
+ parallel --arg-file-sep // echo ::: A B C // def-file
|
||||
A D
|
||||
A E
|
||||
A F
|
||||
B D
|
||||
B E
|
||||
B F
|
||||
C D
|
||||
C E
|
||||
C F
|
||||
+ parallel -d _ echo :::: abc_-file
|
||||
A
|
||||
B
|
||||
C
|
||||
+ parallel -d '\0' echo :::: abc0-file
|
||||
A
|
||||
B
|
||||
C
|
||||
+ parallel -E stop echo ::: A B stop C D
|
||||
A
|
||||
B
|
||||
+ parallel --no-run-if-empty echo
|
||||
1
|
||||
2
|
||||
+ parallel ::: ls 'echo foo' pwd
|
||||
1-col
|
||||
1-col.diff
|
||||
1-col.txt
|
||||
2-col
|
||||
2-col.diff
|
||||
2-col.txt
|
||||
a
|
||||
abc-file
|
||||
abc0-file
|
||||
abc_-file
|
||||
b
|
||||
def-file
|
||||
num1000000
|
||||
num128
|
||||
num30000
|
||||
num8
|
||||
num_%header
|
||||
tsv-file.tsv
|
||||
中国 (Zhōngguó)
|
||||
foo
|
||||
/home/tange/privat/parallel/testsuite/tmp
|
||||
+ export -f my_func
|
||||
+ parallel my_func ::: 1 2 3
|
||||
in my_func 1
|
||||
in my_func 2
|
||||
in my_func 3
|
||||
+ parallel echo ::: A/B.C
|
||||
A/B.C
|
||||
+ parallel echo '{}' ::: A/B.C
|
||||
A/B.C
|
||||
+ parallel echo '{.}' ::: A/B.C
|
||||
A/B
|
||||
+ parallel echo '{/}' ::: A/B.C
|
||||
B.C
|
||||
+ parallel echo '{//}' ::: A/B.C
|
||||
A
|
||||
+ parallel echo '{/.}' ::: A/B.C
|
||||
B
|
||||
+ parallel echo '{#}' ::: A B C
|
||||
1
|
||||
2
|
||||
3
|
||||
+ parallel -j 2 echo '{%}' ::: A B C
|
||||
1
|
||||
2
|
||||
1
|
||||
+ parallel -I ,, echo ,, ::: A/B.C
|
||||
A/B.C
|
||||
+ parallel --extensionreplace ,, echo ,, ::: A/B.C
|
||||
A/B
|
||||
+ parallel --basenamereplace ,, echo ,, ::: A/B.C
|
||||
B.C
|
||||
+ parallel --dirnamereplace ,, echo ,, ::: A/B.C
|
||||
A
|
||||
+ parallel --basenameextensionreplace ,, echo ,, ::: A/B.C
|
||||
B
|
||||
+ parallel --seqreplace ,, echo ,, ::: A B C
|
||||
1
|
||||
2
|
||||
3
|
||||
+ parallel -j2 --slotreplace ,, echo ,, ::: A B C
|
||||
1
|
||||
2
|
||||
1
|
||||
+ parallel echo '{= s:\.[^.]+$::;s:\.[^.]+$::; =}' ::: foo.tar.gz
|
||||
foo
|
||||
+ parallel --parens ,,,, echo ',, s:\.[^.]+$::;s:\.[^.]+$::; ,,' ::: foo.tar.gz
|
||||
foo
|
||||
+ parallel --rpl '.. s:\.[^.]+$::;s:\.[^.]+$::;' echo .. ::: foo.tar.gz
|
||||
foo
|
||||
+ parallel --rpl '{..} s:\.[^.]+$::;s:\.[^.]+$::;' echo '{..}' ::: foo.tar.gz
|
||||
foo
|
||||
+ --rpl '{} '
|
||||
bash: line 103: --rpl: command not found
|
||||
+ --rpl '{#} $_=$job->seq()'
|
||||
bash: line 104: --rpl: command not found
|
||||
+ --rpl '{%} $_=$job->slot()'
|
||||
bash: line 105: --rpl: command not found
|
||||
+ --rpl '{/} s:.*/::'
|
||||
bash: line 106: --rpl: command not found
|
||||
+ --rpl '{//} $Global::use{"File::Basename"} ||= eval "use File::Basename; 1;"; $_ = dirname($_);'
|
||||
bash: line 107: --rpl: command not found
|
||||
+ --rpl '{/.} s:.*/::; s:\.[^/.]+$::;'
|
||||
bash: line 108: --rpl: command not found
|
||||
+ --rpl '{.} s:\.[^/.]+$::'
|
||||
bash: line 109: --rpl: command not found
|
||||
+ parallel echo '{1}' and '{2}' ::: A B ::: C D
|
||||
A and C
|
||||
A and D
|
||||
B and C
|
||||
B and D
|
||||
+ parallel echo '/={1/}' '//={1//}' '/.={1/.}' '.={1.}' ::: A/B.C D/E.F
|
||||
/=B.C //=A /.=B .=A/B
|
||||
/=E.F //=D /.=E .=D/E
|
||||
+ parallel echo '1={1}' '2={2}' '3={3}' '-1={-1}' '-2={-2}' '-3={-3}' ::: A B ::: C D ::: E F
|
||||
1=A 2=C 3=E -1=E -2=C -3=A
|
||||
1=A 2=C 3=F -1=F -2=C -3=A
|
||||
1=A 2=D 3=E -1=E -2=D -3=A
|
||||
1=A 2=D 3=F -1=F -2=D -3=A
|
||||
1=B 2=C 3=E -1=E -2=C -3=B
|
||||
1=B 2=C 3=F -1=F -2=C -3=B
|
||||
1=B 2=D 3=E -1=E -2=D -3=B
|
||||
1=B 2=D 3=F -1=F -2=D -3=B
|
||||
+ parallel echo '{=2 s:\.[^.]+$::;s:\.[^.]+$::; =} {1}' ::: bar ::: foo.tar.gz
|
||||
foo bar
|
||||
+ parallel --rpl '{..} s:\.[^.]+$::;s:\.[^.]+$::;' echo '{2..} {1}' ::: bar ::: foo.tar.gz
|
||||
foo bar
|
||||
+ parallel --colsep '\t' echo '1={1}' '2={2}' :::: tsv-file.tsv
|
||||
1=f1 2=f2
|
||||
1=A 2=B
|
||||
1=C 2=D
|
||||
+ parallel --header : echo 'f1={f1}' 'f2={f2}' ::: f1 A B ::: f2 C D
|
||||
f1=A f2=C
|
||||
f1=A f2=D
|
||||
f1=B f2=C
|
||||
f1=B f2=D
|
||||
+ parallel --header : --colsep '\t' echo 'f1={f1}' 'f2={f2}' :::: tsv-file.tsv
|
||||
f1=A f2=B
|
||||
f1=C f2=D
|
||||
+ parallel --xargs echo
|
||||
2
|
||||
+ parallel --xargs -s 10000 echo
|
||||
17
|
||||
+ parallel --jobs 4 -m echo
|
||||
5
|
||||
+ parallel --jobs 4 -m echo ::: 1 2 3 4 5 6 7 8 9 10
|
||||
1 2 3
|
||||
4 5 6
|
||||
7 8 9
|
||||
10
|
||||
+ parallel --jobs 4 -X echo 'pre-{}-post' ::: A B C D E F G
|
||||
pre-A-post pre-B-post
|
||||
pre-C-post pre-D-post
|
||||
pre-E-post pre-F-post
|
||||
pre-G-post
|
||||
+ parallel -N3 echo ::: A B C D E F G H
|
||||
A B C
|
||||
D E F
|
||||
G H
|
||||
+ parallel -N3 echo '1={1}' '2={2}' '3={3}' ::: A B C D E F G H
|
||||
1=A 2=B 3=C
|
||||
1=D 2=E 3=F
|
||||
1=G 2=H 3=
|
||||
+ parallel -N0 echo foo ::: 1 2 3
|
||||
foo
|
||||
foo
|
||||
foo
|
||||
+ perl -e 'print "@ARGV\n"' A
|
||||
A
|
||||
+ parallel perl -e 'print "@ARGV\n"' ::: This wont work
|
||||
+ parallel: Warning: Input is read from the terminal. Only experts do this on purpose. Press CTRL-D to exit.
|
||||
bash: line 148: parallel:: command not found
|
||||
+ perl -e 'print "@ARGV\n"'
|
||||
|
||||
+ '[CTRL-D]'
|
||||
bash: line 150: [CTRL-D]: command not found
|
||||
+ parallel --trim r echo 'pre-{}-post' ::: ' A '
|
||||
pre- A-post
|
||||
+ parallel --trim l echo 'pre-{}-post' ::: ' A '
|
||||
pre-A -post
|
||||
+ parallel --trim lr echo 'pre-{}-post' ::: ' A '
|
||||
pre-A-post
|
||||
+ parallel --tag echo 'foo-{}' ::: A B C
|
||||
A foo-A
|
||||
B foo-B
|
||||
C foo-C
|
||||
+ parallel --tagstring '{}-bar' echo 'foo-{}' ::: A B C
|
||||
A-bar foo-A
|
||||
B-bar foo-B
|
||||
C-bar foo-C
|
||||
+ parallel --dryrun echo '{}' ::: A B C
|
||||
echo A
|
||||
echo B
|
||||
echo C
|
||||
+ parallel --verbose echo '{}' ::: A B C
|
||||
echo A
|
||||
echo B
|
||||
echo C
|
||||
A
|
||||
B
|
||||
C
|
||||
+ parallel -j2 'printf "%s-start\n%s" {} {};sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1
|
||||
4-start
|
||||
4-middle
|
||||
4-end
|
||||
2-start
|
||||
2-middle
|
||||
2-end
|
||||
1-start
|
||||
1-middle
|
||||
1-end
|
||||
+ parallel -j2 --ungroup 'printf "%s-start\n%s" {} {};sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1
|
||||
4-start
|
||||
42-start
|
||||
2-middle
|
||||
2-end
|
||||
1-start
|
||||
1-middle
|
||||
1-end
|
||||
-middle
|
||||
4-end
|
||||
+ parallel -j2 --linebuffer 'printf "%s-start\n%s" {} {};sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1
|
||||
4-start
|
||||
2-start
|
||||
2-middle
|
||||
2-end
|
||||
1-start
|
||||
1-middle
|
||||
1-end
|
||||
4-middle
|
||||
4-end
|
||||
+ parallel -j2 -k 'printf "%s-start\n%s" {} {};sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1
|
||||
4-start
|
||||
4-middle
|
||||
4-end
|
||||
2-start
|
||||
2-middle
|
||||
2-end
|
||||
1-start
|
||||
1-middle
|
||||
1-end
|
||||
+ parallel --files echo ::: A B C
|
||||
/tmp/parXXXXX.par
|
||||
/tmp/parXXXXX.par
|
||||
/tmp/parXXXXX.par
|
||||
+ parallel --tmpdir /var/tmp --files echo ::: A B C
|
||||
/var/tmp/parXXXXX.par
|
||||
/var/tmp/parXXXXX.par
|
||||
/var/tmp/parXXXXX.par
|
||||
+ parallel --results outdir echo ::: A B C
|
||||
A
|
||||
B
|
||||
C
|
||||
+ outdir/1/A/stderr
|
||||
bash: line 181: outdir/1/A/stderr: Permission denied
|
||||
+ outdir/1/A/stdout
|
||||
bash: line 182: outdir/1/A/stdout: Permission denied
|
||||
+ outdir/1/B/stderr
|
||||
bash: line 183: outdir/1/B/stderr: Permission denied
|
||||
+ outdir/1/B/stdout
|
||||
bash: line 184: outdir/1/B/stdout: Permission denied
|
||||
+ outdir/1/C/stderr
|
||||
bash: line 185: outdir/1/C/stderr: Permission denied
|
||||
+ outdir/1/C/stdout
|
||||
bash: line 186: outdir/1/C/stdout: Permission denied
|
||||
+ parallel --header : --results outdir echo ::: f1 A B ::: f2 C D
|
||||
A C
|
||||
A D
|
||||
B C
|
||||
B D
|
||||
+ outdir/f1/A/f2/C/stderr
|
||||
bash: line 190: outdir/f1/A/f2/C/stderr: Permission denied
|
||||
+ outdir/f1/A/f2/C/stdout
|
||||
bash: line 191: outdir/f1/A/f2/C/stdout: Permission denied
|
||||
+ outdir/f1/A/f2/D/stderr
|
||||
bash: line 192: outdir/f1/A/f2/D/stderr: Permission denied
|
||||
+ outdir/f1/A/f2/D/stdout
|
||||
bash: line 193: outdir/f1/A/f2/D/stdout: Permission denied
|
||||
+ outdir/f1/B/f2/C/stderr
|
||||
bash: line 194: outdir/f1/B/f2/C/stderr: Permission denied
|
||||
+ outdir/f1/B/f2/C/stdout
|
||||
bash: line 195: outdir/f1/B/f2/C/stdout: Permission denied
|
||||
+ outdir/f1/B/f2/D/stderr
|
||||
bash: line 196: outdir/f1/B/f2/D/stderr: Permission denied
|
||||
+ outdir/f1/B/f2/D/stdout
|
||||
bash: line 197: outdir/f1/B/f2/D/stdout: Permission denied
|
||||
+ /usr/bin/time -f %e parallel -N0 -j64 sleep 1 :::: num128
|
||||
2
|
||||
+ /usr/bin/time -f %e parallel -N0 sleep 1 :::: num128
|
||||
16
|
||||
+ /usr/bin/time -f %e parallel -N0 --jobs 200% sleep 1 :::: num128
|
||||
8
|
||||
+ /usr/bin/time -f %e parallel -N0 --jobs 0 sleep 1 :::: num128
|
||||
1
|
||||
+ sleep 1
|
||||
+ /usr/bin/time -f %e parallel -N0 --jobs my_jobs sleep 1 :::: num128
|
||||
+ wait
|
||||
3
|
||||
+ parallel --use-cpus-instead-of-cores -N0 sleep 1 :::: num8
|
||||
+ seq 10 20
|
||||
+ parallel --tmux 'echo start {}; sleep {}; echo done {}'
|
||||
See output with: tmux -S /tmp/parXXXXX.tms attach
|
||||
+ tmux -S /tmp/parXXXXX.tms attach
|
||||
no sessions
|
||||
+ parallel --delay 2.5 echo Starting '{};date' ::: 1 2 3
|
||||
Starting 1
|
||||
DATE OUTPUT
|
||||
Starting 2
|
||||
DATE OUTPUT
|
||||
Starting 3
|
||||
DATE OUTPUT
|
||||
+ parallel --timeout 2.1 sleep '{};' echo '{}' ::: 1 2 3 4
|
||||
1
|
||||
2
|
||||
+ parallel --timeout 200% sleep '{};' echo '{}' ::: 2.1 2.2 3 7 2.3
|
||||
2
|
||||
2
|
||||
3
|
||||
2
|
||||
+ parallel --eta sleep ::: 1 3 2 2 1 3 3 2 1
|
||||
|
||||
Computers / CPU cores / Max jobs to run
|
||||
1:local / 8 / 8
|
||||
|
||||
Computer:jobs running/jobs completed/%of started jobs/Average seconds to complete
|
||||
|
||||
+ parallel --progress sleep ::: 1 3 2 2 1 3 3 2 1
|
||||
|
||||
Computers / CPU cores / Max jobs to run
|
||||
1:local / 8 / 8
|
||||
|
||||
Computer:jobs running/jobs completed/%of started jobs/Average seconds to complete
|
||||
|
||||
+ seq 1000
|
||||
+ parallel -j10 --bar '(echo -n {};sleep 0.1)'
|
||||
++ zenity --timeout=12 --progress --auto-kill
|
||||
BASE64 parallel --joblog /tmp/log exit ::: 1 2 3 0
|
||||
Seq Host Starttime JobRuntime Send Receive Exitval Signal Command
|
||||
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
|
||||
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
|
||||
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
|
||||
4 : TIMESTAMP 9.999 0 0 0 0 exit 0
|
||||
+ parallel --joblog /tmp/log exit ::: 1 2 3 0
|
||||
Seq Host Starttime JobRuntime Send Receive Exitval Signal Command
|
||||
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
|
||||
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
|
||||
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
|
||||
4 : TIMESTAMP 9.999 0 0 0 0 exit 0
|
||||
+ parallel --resume --joblog /tmp/log exit ::: 1 2 3 0 0 0
|
||||
Seq Host Starttime JobRuntime Send Receive Exitval Signal Command
|
||||
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
|
||||
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
|
||||
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
|
||||
4 : TIMESTAMP 9.999 0 0 0 0 exit 0
|
||||
5 : TIMESTAMP 9.999 0 0 0 0 exit 0
|
||||
6 : TIMESTAMP 9.999 0 0 0 0 exit 0
|
||||
+ parallel --resume-failed --joblog /tmp/log exit ::: 1 2 3 0 0 0
|
||||
Seq Host Starttime JobRuntime Send Receive Exitval Signal Command
|
||||
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
|
||||
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
|
||||
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
|
||||
4 : TIMESTAMP 9.999 0 0 0 0 exit 0
|
||||
5 : TIMESTAMP 9.999 0 0 0 0 exit 0
|
||||
6 : TIMESTAMP 9.999 0 0 0 0 exit 0
|
||||
1 : TIMESTAMP 9.999 0 0 1 0 exit 1
|
||||
2 : TIMESTAMP 9.999 0 0 2 0 exit 2
|
||||
3 : TIMESTAMP 9.999 0 0 3 0 exit 3
|
||||
+ parallel -j2 --halt 1 echo '{};' exit '{}' ::: 0 0 1 2 3
|
||||
0
|
||||
0
|
||||
1
|
||||
parallel: Starting no more jobs. Waiting for 2 jobs to finish. This job failed:
|
||||
echo 1; exit 1
|
||||
2
|
||||
parallel: Starting no more jobs. Waiting for 1 jobs to finish. This job failed:
|
||||
echo 2; exit 2
|
||||
+ parallel -j2 --halt 2 echo '{};' exit '{}' ::: 0 0 1 2 3
|
||||
0
|
||||
0
|
||||
1
|
||||
parallel: This job failed:
|
||||
echo 1; exit 1
|
||||
+ parallel -j2 --halt 20% echo '{};' exit '{}' ::: 0 0 1 2 3 4 5 6 7
|
||||
0
|
||||
0
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
parallel: Starting no more jobs. Waiting for 2 jobs to finish. This job failed:
|
||||
echo 4; exit 4
|
||||
5
|
||||
parallel: Starting no more jobs. Waiting for 1 jobs to finish. This job failed:
|
||||
echo 5; exit 5
|
||||
+ parallel -k --retries 3 'echo tried {} >>/tmp/runs; echo completed {}; exit {}' ::: 1 2 0
|
||||
completed 1
|
||||
completed 2
|
||||
completed 0
|
||||
tried 1
|
||||
tried 2
|
||||
tried 0
|
||||
tried 1
|
||||
tried 2
|
||||
tried 1
|
||||
tried 2
|
||||
+ parallel --load 100% echo load is less than '{}' job per cpu ::: 1
|
||||
load is less than 1 job per cpu
|
||||
+ parallel --noswap echo the system is not swapping ::: now
|
||||
the system is not swapping now
|
||||
+ parallel --nice 17 echo this is being run with nice -n ::: 17
|
||||
this is being run with nice -n 17
|
||||
+ parallel -S parallel@lo echo running on ::: parallel@lo
|
||||
running on parallel@lo
|
||||
+ parallel -S parallel@lo echo running on ::: username@parallel@lo
|
||||
running on username@parallel@lo
|
||||
+ parallel -S : echo running on ::: the_local_machine
|
||||
running on the_local_machine
|
||||
+ parallel -S '/usr/bin/ssh parallel@lo' echo custom ::: ssh
|
||||
custom ssh
|
||||
+ parallel -S parallel@lo -S csh@lo echo ::: running on more hosts
|
||||
running
|
||||
on
|
||||
more
|
||||
hosts
|
||||
+ parallel --sshloginfile nodefile echo ::: running on more hosts
|
||||
running
|
||||
on
|
||||
more
|
||||
hosts
|
||||
+ parallel -S 4/parallel@lo echo force '{}' cpus on server ::: 4
|
||||
force 4 cpus on server
|
||||
+ parallel -S parallel@lo --transfer cat ::: input_file
|
||||
This is input_file
|
||||
+ parallel -S parallel@lo --transfer --return '{}.out' cat '{}' '>{}.out' ::: input_file
|
||||
This is input_file
|
||||
+ parallel -S parallel@lo --transfer --return '{}.out' --cleanup cat '{}' '>{}.out' ::: input_file
|
||||
This is input_file
|
||||
+ parallel -S parallel@lo --trc '{}.out' cat '{}' '>{}.out' ::: input_file
|
||||
This is input_file
|
||||
+ parallel --basefile common_file -S parallel@lo cat 'common_file;' echo '{}' ::: foo
|
||||
common data
|
||||
foo
|
||||
+ parallel -S parallel@lo pwd ::: ''
|
||||
/home/parallel
|
||||
+ parallel --workdir . -S parallel@lo pwd ::: ''
|
||||
/home/parallel/privat/parallel/testsuite/tmp
|
||||
+ parallel --workdir ... -S parallel@lo pwd ::: ''
|
||||
/home/parallel/.TMPWORKDIR
|
||||
+ parallel -S parallel@lo --sshdelay 0.2 echo ::: 1 2 3
|
||||
1
|
||||
2
|
||||
3
|
||||
+ parallel --controlmaster -S parallel@lo echo ::: 1 2 3
|
||||
1
|
||||
2
|
||||
3
|
||||
+ parallel --filter-hosts -S 173.194.32.46,parallel@lo echo ::: bar
|
||||
parallel: Warning: Removed 173.194.32.46
|
||||
bar
|
||||
+ parallel --onall -S parallel@lo,csh@lo echo ::: foo bar
|
||||
foo
|
||||
bar
|
||||
foo
|
||||
bar
|
||||
+ parallel --nonall --tag -S parallel@lo,csh@lo echo foo bar
|
||||
csh@lo foo bar
|
||||
parallel@lo foo bar
|
||||
+ MYVAR='foo bar'
|
||||
+ export MYVAR
|
||||
+ parallel --env MYVAR -S parallel@lo echo '$MYVAR' ::: baz
|
||||
foo bar baz
|
||||
+ export -f my_func
|
||||
+ parallel --env my_func -S parallel@lo my_func ::: baz
|
||||
in my_func baz
|
||||
+ parallel --record-env
|
||||
+ sort
|
||||
BASH_FUNC_my_func%%
|
||||
CLUTTER_IM_MODULE
|
||||
COLORFGBG
|
||||
DBUS_SESSION_BUS_ADDRESS
|
||||
DEBEMAIL
|
||||
DEBFULLNAME
|
||||
DEFAULTS_PATH
|
||||
DESKTOP_SESSION
|
||||
DISPLAY
|
||||
DM_CONTROL
|
||||
GLADE_CATALOG_PATH
|
||||
GLADE_MODULE_PATH
|
||||
GLADE_PIXMAP_PATH
|
||||
GPG_AGENT_INFO
|
||||
GTK_IM_MODULE
|
||||
HISTCONTROL
|
||||
HOME
|
||||
IM_CONFIG_PHASE
|
||||
INSTANCE
|
||||
JAVA_HOME
|
||||
JDK_HOME
|
||||
JOB
|
||||
KONSOLE_DBUS_SERVICE
|
||||
KONSOLE_DBUS_SESSION
|
||||
KONSOLE_DBUS_WINDOW
|
||||
KONSOLE_PROFILE_NAME
|
||||
LANG
|
||||
LANGUAGE
|
||||
LESS
|
||||
LESSCLOSE
|
||||
LESSOPEN
|
||||
LOGNAME
|
||||
LS_COLORS
|
||||
MAKEFLAGS
|
||||
MAKELEVEL
|
||||
MANDATORY_PATH
|
||||
MFLAGS
|
||||
MOZ_NO_REMOTE
|
||||
MYVAR
|
||||
ORACLE_HOME
|
||||
ORACLE_SID
|
||||
PARALLEL
|
||||
PATH
|
||||
PERL_MB_OPT
|
||||
PERL_MM_OPT
|
||||
PROFILEHOME
|
||||
PWD
|
||||
QT4_IM_MODULE
|
||||
QT_IM_MODULE
|
||||
SELINUX_INIT
|
||||
SERVER1
|
||||
SERVER2
|
||||
SESSION
|
||||
SESSIONTYPE
|
||||
SESSION_MANAGER
|
||||
SHELL
|
||||
SHELL_SESSION_ID
|
||||
SHLVL
|
||||
SSH_AGENT_PID
|
||||
SSH_AUTH_SOCK
|
||||
TERM
|
||||
TEXTDOMAIN
|
||||
TEXTDOMAINDIR
|
||||
TIMEOUT
|
||||
TMPDIR
|
||||
UPSTART_EVENTS
|
||||
UPSTART_INSTANCE
|
||||
UPSTART_JOB
|
||||
UPSTART_SESSION
|
||||
USER
|
||||
VISUAL
|
||||
WINDOWID
|
||||
WINDOWPATH
|
||||
XDG_CONFIG_DIRS
|
||||
XDG_CURRENT_DESKTOP
|
||||
XDG_DATA_DIRS
|
||||
XDG_MENU_PREFIX
|
||||
XDG_RUNTIME_DIR
|
||||
XDG_SEAT
|
||||
XDG_SESSION_ID
|
||||
XDG_VTNR
|
||||
XDM_MANAGED
|
||||
XMODIFIERS
|
||||
_
|
||||
+ export -f my_func2
|
||||
+ VAR=foo
|
||||
+ export VAR
|
||||
+ parallel --env _ -S parallel@lo 'echo $VAR; my_func2' ::: bar
|
||||
foo
|
||||
in my_func2 foo bar
|
||||
+ parallel -vv -S parallel@lo echo ::: bar
|
||||
ssh parallel@lo exec perl\ -e\ \\\$ENV\\\{\\\"PARALLEL_PID\\\"\\\}=\\\"000000\\\"\\\;\\\$ENV\\\{\\\"PARALLEL_SEQ\\\"\\\}=\\\"1\\\"\\\;\\\$bashfunc\\\ =\\\ \\\"\\\"\\\;@ARGV=\\\"echo\\\ bar\\\"\\\;\\\$shell=\\\"\\\$ENV\\\{SHELL\\\}\\\"\\\;\\\$SIG\\\{CHLD\\\}=sub\\\{\\\$done=1\\\;\\\}\\\;\\\$pid=fork\\\;unless\\\(\\\$pid\\\)\\\{setpgrp\\\;exec\\\$shell,\\\"-c\\\",\\\(\\\$bashfunc.\\\"@ARGV\\\"\\\)\\\;die\\\"exec:\\\$\\\!\\\\n\\\"\\\;\\\}do\\\{\\\$s=\\\$s\\\<1\\\?0.001+\\\$s\\\*1.03:\\\$s\\\;select\\\(undef,undef,undef,\\\$s\\\)\\\;\\\}until\\\(\\\$done\\\|\\\|getppid==1\\\)\\\;kill\\\(SIGHUP,-\\\$\\\{pid\\\}\\\)unless\\\$done\\\;wait\\\;exit\\\(\\\$\\\?\\\&127\\\?128+\\\(\\\$\\\?\\\&127\\\):1+\\\$\\\?\\\>\\\>8\\\);
|
||||
bar
|
||||
+ export -f my_func3
|
||||
+ parallel -vv --workdir ... --nice 17 --env _ --trc '{}.out' -S parallel@lo my_func3 '{}' ::: abc-file
|
||||
( ssh parallel@lo mkdir -p ./.TMPWORKDIR;rsync --protocol 30 -rlDzR -essh ./abc-file parallel@lo:./.TMPWORKDIR );ssh parallel@lo exec perl -e \''@GNU_Parallel=("use","IPC::Open3;","use","MIME::Base64");eval"@GNU_Parallel";$SIG{CHLD}="IGNORE";my$zip=(grep{-x$_}"/usr/local/bin/bzip2")[0]||"bzip2";my($in,$out,$eval);open3($in,$out,">&STDERR",$zip,"-dc");if(my$perlpid=fork){close$in;$eval=join"",<$out>;close$out;}else{close$out;print$in(decode_base64(join"",@ARGV));close$in;exit;}wait;eval$eval;'\' BASE64;_EXIT_status=$?; mkdir -p ./.; rsync --protocol 30 --rsync-path=cd\ ./.TMPWORKDIR/./.\;\ rsync -rlDzR -essh parallel@lo:./abc-file.out ./.;ssh parallel@lo \(rm\ -f\ ./.TMPWORKDIR/abc-file\;\ sh\ -c\ \'rmdir\ ./.TMPWORKDIR/\ ./.parallel/tmp/\ ./.parallel/\ 2\>/dev/null\'\;rm\ -rf\ ./.TMPWORKDIR\;\);ssh parallel@lo \(rm\ -f\ ./.TMPWORKDIR/abc-file.out\;\ sh\ -c\ \'rmdir\ ./.TMPWORKDIR/\ ./.parallel/tmp/\ ./.parallel/\ 2\>/dev/null\'\;rm\ -rf\ ./.TMPWORKDIR\;\);ssh parallel@lo rm -rf .TMPWORKDIR; exit $_EXIT_status;
|
||||
+ parallel --pipe wc
|
||||
165668 165668 1048571
|
||||
149797 149797 1048579
|
||||
149796 149796 1048572
|
||||
149797 149797 1048579
|
||||
149797 149797 1048579
|
||||
149796 149796 1048572
|
||||
85349 85349 597444
|
||||
+ parallel --pipe --block 2M wc
|
||||
315465 315465 2097150
|
||||
299593 299593 2097151
|
||||
299593 299593 2097151
|
||||
85349 85349 597444
|
||||
+ parallel --pipe -j4 --round-robin wc
|
||||
315465 315465 2097150
|
||||
299593 299593 2097151
|
||||
235145 235145 1646016
|
||||
149797 149797 1048579
|
||||
+ parallel --pipe -N140000 wc
|
||||
140000 140000 868895
|
||||
140000 140000 980000
|
||||
140000 140000 980000
|
||||
140000 140000 980000
|
||||
140000 140000 980000
|
||||
140000 140000 980000
|
||||
140000 140000 980000
|
||||
20000 20000 140001
|
||||
+ parallel --pipe -L75 wc
|
||||
165600 165600 1048095
|
||||
149850 149850 1048950
|
||||
149775 149775 1048425
|
||||
149775 149775 1048425
|
||||
149850 149850 1048950
|
||||
149775 149775 1048425
|
||||
85350 85350 597450
|
||||
25 25 176
|
||||
+ parallel -kN1 --recend ', ' --pipe echo 'JOB{#};cat;echo' END
|
||||
JOB1
|
||||
/foo, END
|
||||
JOB2
|
||||
bar/, END
|
||||
JOB3
|
||||
/baz, END
|
||||
JOB4
|
||||
qux/,
|
||||
END
|
||||
+ parallel -kN1 --recstart / --pipe echo 'JOB{#};cat;echo' END
|
||||
JOB1
|
||||
/foo, barEND
|
||||
JOB2
|
||||
/, END
|
||||
JOB3
|
||||
/baz, quxEND
|
||||
JOB4
|
||||
/,
|
||||
END
|
||||
+ parallel -kN1 --recend ', ' --recstart / --pipe echo 'JOB{#};cat;echo' END
|
||||
JOB1
|
||||
/foo, bar/, END
|
||||
JOB2
|
||||
/baz, qux/,
|
||||
END
|
||||
+ parallel -kN1 --regexp --recend ,_+ --pipe echo 'JOB{#};cat;echo' END
|
||||
JOB1
|
||||
foo,bar,_END
|
||||
JOB2
|
||||
baz,__END
|
||||
JOB3
|
||||
qux,
|
||||
END
|
||||
+ parallel -kN1 --rrs --regexp --recend ,_+ --pipe echo 'JOB{#};cat;echo' END
|
||||
JOB1
|
||||
foo,barEND
|
||||
JOB2
|
||||
bazEND
|
||||
JOB3
|
||||
qux,
|
||||
END
|
||||
+ parallel --header '(%.*\n)*' --pipe -N3 echo 'JOB{#};cat'
|
||||
JOB1
|
||||
%head1
|
||||
%head2
|
||||
1
|
||||
2
|
||||
3
|
||||
JOB2
|
||||
%head1
|
||||
%head2
|
||||
4
|
||||
5
|
||||
6
|
||||
JOB3
|
||||
%head1
|
||||
%head2
|
||||
7
|
||||
8
|
||||
9
|
||||
JOB4
|
||||
%head1
|
||||
%head2
|
||||
10
|
||||
+ parallel --header 2 --pipe -N3 echo 'JOB{#};cat'
|
||||
JOB1
|
||||
%head1
|
||||
%head2
|
||||
1
|
||||
2
|
||||
3
|
||||
JOB2
|
||||
%head1
|
||||
%head2
|
||||
4
|
||||
5
|
||||
6
|
||||
JOB3
|
||||
%head1
|
||||
%head2
|
||||
7
|
||||
8
|
||||
9
|
||||
JOB4
|
||||
%head1
|
||||
%head2
|
||||
10
|
||||
+ parallel --pipepart -a num1000000 --block 3m wc
|
||||
444444 444444 3000003
|
||||
428572 428572 3000004
|
||||
126984 126984 888889
|
||||
+ parallel command
|
||||
/bin/bash: This is input_file: command not found
|
||||
+ foo
|
||||
bash: line 374: foo: command not found
|
||||
+ bar
|
||||
bash: line 375: bar: command not found
|
||||
+ baz
|
||||
bash: line 376: baz: command not found
|
||||
+ parallel command
|
||||
/bin/bash: This is input_file: command not found
|
||||
+ parallel command ::: foo bar
|
||||
/bin/bash: foo: command not found
|
||||
/bin/bash: bar: command not found
|
||||
+ command
|
||||
+ command foo bar
|
||||
+ foo bar
|
||||
bash: line 382: foo: command not found
|
||||
+ print '@ARGV\n'
|
||||
Warning: unknown mime-type for "@ARGV\n" -- using "application/octet-stream"
|
||||
Error: no such file "@ARGV\n"
|
||||
+ parallel perl_echo ::: foo bar
|
||||
/bin/bash: perl_echo: command not found
|
||||
/bin/bash: perl_echo: command not found
|
||||
+ print '@ARGV\n'
|
||||
Warning: unknown mime-type for "@ARGV\n" -- using "application/octet-stream"
|
||||
Error: no such file "@ARGV\n"
|
||||
+ perl_echo foo bar
|
||||
bash: line 394: perl_echo: command not found
|
||||
+ sem 'sleep 1; echo The first finished'
|
||||
The first is now running in the background
|
||||
+ sem 'sleep 1; echo The second finished'
|
||||
The first finished
|
||||
The second is now running in the background
|
||||
+ sem --wait
|
||||
The second finished
|
||||
+ sem --fg 'sleep 1; echo The first finished'
|
||||
The first finished
|
||||
The first finished running in the foreground
|
||||
+ sem --fg 'sleep 1; echo The second finished'
|
||||
The second finished
|
||||
The second finished running in the foreground
|
||||
+ sem --wait
|
||||
+ sem --id my_id -u 'echo First started; sleep 10; echo The first finished'
|
||||
+ sem --id my_id -u 'echo Second started; sleep 10; echo The second finished'
|
||||
First started
|
||||
The first finished
|
||||
+ sem --jobs 3 --id my_id -u 'echo First started; sleep 5; echo The first finished'
|
||||
Second started
|
||||
+ sem --jobs 3 --id my_id -u 'echo Second started; sleep 6; echo The second finished'
|
||||
First started
|
||||
+ sem --jobs 3 --id my_id -u 'echo Third started; sleep 7; echo The third finished'
|
||||
Second started
|
||||
The first finished
|
||||
+ sem --jobs 3 --id my_id -u 'echo Fourth started; sleep 8; echo The fourth finished'
|
||||
Third started
|
||||
The second finished
|
||||
+ sem --wait --id my_id
|
||||
Fourth started
|
||||
The second finished
|
||||
The third finished
|
||||
The fourth finished
|
||||
+ parallel --help
|
||||
Usage:
|
||||
|
||||
parallel [options] [command [arguments]] < list_of_arguments
|
||||
parallel [options] [command [arguments]] (::: arguments|:::: argfile(s))...
|
||||
cat ... | parallel --pipe [options] [command [arguments]]
|
||||
|
||||
-j n Run n jobs in parallel
|
||||
-k Keep same order
|
||||
-X Multiple arguments with context replace
|
||||
--colsep regexp Split input on regexp for positional replacements
|
||||
{} {.} {/} {/.} {#} {%} {= perl code =} Replacement strings
|
||||
{3} {3.} {3/} {3/.} {=3 perl code =} Positional replacement strings
|
||||
With --plus: {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..} =
|
||||
{+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
|
||||
|
||||
-S sshlogin Example: foo@server.example.com
|
||||
--slf .. Use ~/.parallel/sshloginfile as the list of sshlogins
|
||||
--trc {}.bar Shorthand for --transfer --return {}.bar --cleanup
|
||||
--onall Run the given command with argument on all sshlogins
|
||||
--nonall Run the given command with no arguments on all sshlogins
|
||||
|
||||
--pipe Split stdin (standard input) to multiple jobs.
|
||||
--recend str Record end separator for --pipe.
|
||||
--recstart str Record start separator for --pipe.
|
||||
|
||||
See 'man parallel' for details
|
||||
|
||||
Academic tradition requires you to cite works you base your article on.
|
||||
When using programs that use GNU Parallel to process data for publication
|
||||
please cite:
|
||||
|
||||
O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
|
||||
;login: The USENIX Magazine, February 2011:42-47.
|
||||
|
||||
This helps funding further development; and it won't cost you a cent.
|
||||
If you pay 10000 EUR you should feel free to use GNU Parallel without citing.
|
||||
|
||||
+ parallel --version
|
||||
GNU parallel 20150329
|
||||
Copyright (C) 2007,2008,2009,2010,2011,2012,2013,2014,2015 Ole Tange
|
||||
and Free Software Foundation, Inc.
|
||||
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
|
||||
This is free software: you are free to change and redistribute it.
|
||||
GNU parallel comes with no warranty.
|
||||
|
||||
Web site: http://www.gnu.org/software/parallel
|
||||
|
||||
When using programs that use GNU Parallel to process data for publication
|
||||
please cite as described in 'parallel --bibtex'.
|
||||
+ parallel --minversion 20130722
|
||||
20150329
|
||||
Your version is at least 20130722.
|
||||
+ parallel --bibtex
|
||||
Academic tradition requires you to cite works you base your article on.
|
||||
When using programs that use GNU Parallel to process data for publication
|
||||
please cite:
|
||||
|
||||
@article{Tange2011a,
|
||||
title = {GNU Parallel - The Command-Line Power Tool},
|
||||
author = {O. Tange},
|
||||
address = {Frederiksberg, Denmark},
|
||||
journal = {;login: The USENIX Magazine},
|
||||
month = {Feb},
|
||||
number = {1},
|
||||
volume = {36},
|
||||
url = {http://www.gnu.org/s/parallel},
|
||||
year = {2011},
|
||||
pages = {42-47}
|
||||
doi = {10.5281/zenodo.16303}
|
||||
}
|
||||
|
||||
(Feel free to use \nocite{Tange2011a})
|
||||
|
||||
This helps funding further development; and it won't cost you a cent.
|
||||
If you pay 10000 EUR you should feel free to use GNU Parallel without citing.
|
||||
|
||||
If you send a copy of your published article to tange@gnu.org, it will be
|
||||
mentioned in the release notes of next version of GNU Parallel.
|
||||
|
||||
+ parallel --max-line-length-allowed
|
||||
131071
|
||||
+ parallel --number-of-cpus
|
||||
1
|
||||
+ parallel --number-of-cores
|
||||
8
|
||||
+ parallel --profile nicetimeout echo ::: A B C
|
||||
A
|
||||
B
|
||||
C
|
||||
+ parallel --profile dryverbose --profile nicetimeout echo ::: A B C
|
||||
\nice -n17 /bin/bash -c echo\ A
|
||||
\nice -n17 /bin/bash -c echo\ B
|
||||
\nice -n17 /bin/bash -c echo\ C
|
||||
Loading…
Reference in a new issue