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Fixed bug #46819: --wd is ignored for --nonall.
This commit is contained in:
Ole Tange
parent
582164930a
commit
37fd9adb7b
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@ -241,6 +241,8 @@ New in this release:
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* man parallel_tutorial has been given an overhaul.
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* --workdir now accepts replacementstrings.
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* << kontakt GNU Parallel was used (unfortunately without citation) in: Instrumentation and Trace Analysis for Ad-hoc Python Workflows in Cloud Environments http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7214035>>
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* <<Har angiveligt submittet ny version - afventer opdatering>> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345
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@ -257,12 +259,18 @@ for Big Data Applications https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumb
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* <<Citation needed: Introspecting for RSA Key Material to Assist Intrusion Detection http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=7331177&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7331177>>
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* GNU Parallel is used in LAST: http://last.cbrc.jp/
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* GNU Parallel was cited in: Possum - A Framework for Three-Dimensional Reconstruction of Brain Images rfom Serial Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
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* GNU Parallel was cited in: A Genetic Algorithm for the selection of structural MRI features for classification of Mild Cognitive Impairment and Alzheimer's Disease http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
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* GNU Parallel was cited in: The Effect of Domain Modeling on Performance of Planning Algorithms http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
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* Plotting time tables for jobs run by GNU Parallel https://github.com/ziotom78/plot_joblog
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* GNU Parallel was used in: Mission Impossible: you have 1 minute to analyze the Ebola Genome https://www.biostars.org/p/119397
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* GNU Parallel is used in LAST: http://last.cbrc.jp/
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* Distributed Log Search Using GNU Parallel http://blog.codehate.com/post/134320079974/distributed-log-search-using-gnu-parallel
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* Bug fixes and man page updates.
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@ -3208,6 +3208,7 @@ sub onall {
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((defined $opt::retries) ? "--retries ".$opt::retries : ""),
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((defined $opt::timeout) ? "--timeout ".$opt::timeout : ""),
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((defined $opt::ungroup) ? "-u" : ""),
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((defined $opt::workdir) ? "--wd ".$opt::workdir : ""),
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(@Global::transfer_files ? map { "--tf ".::shell_quote_scalar($_) }
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@Global::transfer_files : ""),
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(@Global::ret_files ? map { "--return ".::shell_quote_scalar($_) }
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@ -9737,6 +9738,7 @@ sub new {
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"pg" => "Pg",
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"postgres" => "Pg",
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"postgresql" => "Pg",
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"csv" => "CSV",
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"oracle" => "Oracle",
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"ora" => "Oracle");
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my $driver = $driveralias{$options{'databasedriver'}} ||
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@ -9840,7 +9842,7 @@ sub parse_dburl {
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if($url=~m!(?:sql:)? # You can prefix with 'sql:'
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((?:oracle|ora|mysql|pg|postgres|postgresql)(?:s|ssl|)|
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(?:sqlite|sqlite2|sqlite3)):// # Databasedriver ($1)
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(?:sqlite|sqlite2|sqlite3|csv)):// # Databasedriver ($1)
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(?:
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([^:@/][^:@]*|) # Username ($2)
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(?:
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@ -322,7 +322,7 @@ shell quote a string
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=item Z<> B<total_jobs()>
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number of jobs in total (alpha testing)
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number of jobs in total (beta testing)
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=back
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@ -452,9 +452,9 @@ It is compatible with B<zenity>:
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2> >(zenity --progress --auto-kill) | wc
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=item B<--basefile> I<file> (alpha testing)
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=item B<--basefile> I<file> (beta testing)
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=item B<--bf> I<file> (alpha testing)
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=item B<--bf> I<file> (beta testing)
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I<file> will be transferred to each sshlogin before a jobs is
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started. It will be removed if B<--cleanup> is active. The file may be
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@ -540,7 +540,7 @@ Implies B<--pipe> unless B<--pipepart> is used.
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See also B<--fifo>.
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=item B<--cleanup> (alpha testing)
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=item B<--cleanup> (beta testing)
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Remove transferred files. B<--cleanup> will remove the transferred
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files on the remote computer after processing is done.
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@ -1060,9 +1060,9 @@ the same syntax as B<--jobs>, so I<100%> for one per CPU is a valid
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setting. Only difference is 0 which is interpreted as 0.01.
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=item B<--controlmaster> (alpha testing)
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=item B<--controlmaster> (beta testing)
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=item B<-M> (alpha testing)
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=item B<-M> (beta testing)
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Use ssh's ControlMaster to make ssh connections faster. Useful if jobs
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run remote and are very fast to run. This is disabled for sshlogins
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@ -1100,7 +1100,7 @@ See also B<-X> for context replace. If in doubt use B<-X> as that will
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most likely do what is needed.
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=item B<--memfree> I<size> (beta testing)
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=item B<--memfree> I<size>
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Minimum memory free when starting another job. The I<size> can be
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postfixed with K, M, G, T, P, k, m, g, t, or p which would multiply
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@ -1161,9 +1161,9 @@ of each job is saved in a file and the filename is then printed.
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See also: B<--results>
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=item B<--pipe> (alpha testing)
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=item B<--pipe> (beta testing)
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=item B<--spreadstdin> (alpha testing)
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=item B<--spreadstdin> (beta testing)
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Spread input to jobs on stdin (standard input). Read a block of data
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from stdin (standard input) and give one block of data as input to one
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@ -1524,7 +1524,7 @@ the joblog.
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See also B<--joblog>, B<--resume>, B<--resume-failed>.
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=item B<--retries> I<n> (alpha testing)
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=item B<--retries> I<n> (beta testing)
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If a job fails, retry it on another computer on which it has not
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failed. Do this I<n> times. If there are fewer than I<n> computers in
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@ -1533,7 +1533,7 @@ useful if some jobs fail for no apparent reason (such as network
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failure).
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=item B<--return> I<filename> (alpha testing)
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=item B<--return> I<filename> (beta testing)
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Transfer files from remote computers. B<--return> is used with
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B<--sshlogin> when the arguments are files on the remote computers. When
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@ -2050,14 +2050,14 @@ Print the job to be run on stderr (standard error).
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See also B<-v>, B<-p>.
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=item B<--transfer> (alpha testing)
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=item B<--transfer> (beta testing)
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Transfer files to remote computers. Shorthand for: B<--transferfile {}>.
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=item B<--transferfile> I<filename> (alpha testing)
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=item B<--transferfile> I<filename> (beta testing)
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=item B<--tf> I<filename> (alpha testing)
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=item B<--tf> I<filename> (beta testing)
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B<--transferfile> is used with B<--sshlogin> to transfer files to the
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remote computers. The files will be transferred using B<rsync> and
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@ -2187,9 +2187,9 @@ Use B<-v> B<-v> to print the wrapping ssh command when running remotely.
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Print the version GNU B<parallel> and exit.
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=item B<--workdir> I<mydir>
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=item B<--workdir> I<mydir> (alpha testing)
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=item B<--wd> I<mydir>
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=item B<--wd> I<mydir> (alpha testing)
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Files transferred using B<--transferfile> and B<--return> will be
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relative to I<mydir> on remote computers, and the command will be
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@ -2211,6 +2211,8 @@ To see the difference try:
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parallel --wd . -S server pwd ::: ""
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parallel --wd ... -S server pwd ::: ""
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I<mydir> can contain GNU B<parallel>'s replacement strings.
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=item B<--wait>
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@ -81,4 +81,7 @@ echo '### Test --wd {= =}';
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parallel --workdir '{= $_=uc($_) =}' -S $SSHLOGIN2 touch ::: wd1 wd2;
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ssh $SSHLOGIN2 ls -d WD1 WD2
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echo '### Test --nonall --wd';
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parallel --workdir /tmp -S $SSHLOGIN2 --nonall pwd
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EOF
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@ -93,11 +93,11 @@ OK
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# Test gl. parallel med --ssh lsh: Hvilke fejler? brug dem. Også hvis de fejler
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echo '### bug #45025: --pipe --retries does not reschedule on other host'
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### bug #45025: --pipe --retries does not reschedule on other host
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seq 1 300030| stdout parallel -k --retries 2 -S a.a,: --pipe 'wc;hostname'
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seq 1 300030| stdout parallel -k --retries 2 -S a.a,: --pipe 'wc;hostname' | perl -pe 's/'`hostname`'/localhost-:/'
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parallel: Warning: Could not figure out number of cpus on a.a (). Using 1.
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165668 165668 1048571
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aspire
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localhost-:
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134362 134362 940534
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aspire
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localhost-:
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stdout parallel --retries 2 --roundrobin echo ::: should fail
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parallel: Error: --retries cannot be combined with --roundrobin.
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@ -114,3 +114,6 @@ echo '### Test --wd {= =}'; ssh csh@lo rm -rf WD1 WD2; mkdir -p $HOME/mydir;
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### Test --wd {= =}
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WD1
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WD2
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echo '### Test --nonall --wd'; parallel --workdir /tmp -S csh@lo --nonall pwd
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### Test --nonall --wd
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/tmp
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