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Released as 20150522 ('Nepal')
This commit is contained in:
Ole Tange
parent
e64461941b
commit
39ff23c10d
41
NEWS
41
NEWS
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@ -1,3 +1,44 @@
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20150522
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* Security: The security issue for --sshlogin + --fifo/--cat has been fixed. Thereby all issues with http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html have been fixed.
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* Security: After further security analysis the issue fixed in 20150422 also fixed the problem for --tmux.
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* GNU Parallel was cited in: CIDER: a pipeline for detecting waves of coordinated transcriptional regulation in gene expression time-course data http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
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* GNU Parallel was cited in: Building Genomic Analysis Pipelines in a Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics, Metagenomics and RNA-seq http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf
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* GNU Parallel was cited in: Toward Enhanced Metadata Quality of Large-Scale Digital Libraries: Estimating Volume Time Range https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
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* GNU Parallel was cited in: Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf
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* GNU Parallel was cited in: Genome assembly using Nanopore-guided long and error-free DNA reads http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf
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* GNU Parallel was cited in: Contrasting regional architectures of schizophrenia and other complex diseases using fast variance components analysis http://biorxiv.org/content/biorxiv/early/2015/03/13/016527.full.pdf
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* GNU Parallel was used (unfortunately with wrong citation) in: Comparing the CarbonTracker and TM5-4DVar data assimilation systems for CO2 surface flux inversions http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
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* GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method https://bitbucket.org/srp33/gsoa
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* A Quick and Neat :) Orchestrator using GNU Parallel http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/
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* Execute commands on multiple computers using GNU Parallel (setting up a cluster on the cheap) https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/
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* Functions and GNU parallel for effective cluster load management http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html
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* Use parallel processing to save time importing databases http://drupalsun.com/node/41854
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* Run multiple ssh commands in parallel with GNU Parallel http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html
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* Importing huge databases faster https://www.lullabot.com/blog/article/importing-huge-databases-faster
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* Run multiple ssh commands in parallel with GNU Parallel https://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html/comment-page-1
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* Parallel? Gnu parallel! https://debian.pro/1834
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* Bug fixes and man page updates.
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20150422
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New in this release:
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12
README
12
README
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@ -40,9 +40,9 @@ document.
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Full installation of GNU Parallel is as simple as:
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wget http://ftpmirror.gnu.org/parallel/parallel-20150422.tar.bz2
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bzip2 -dc parallel-20150422.tar.bz2 | tar xvf -
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cd parallel-20150422
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wget http://ftpmirror.gnu.org/parallel/parallel-20150522.tar.bz2
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bzip2 -dc parallel-20150522.tar.bz2 | tar xvf -
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cd parallel-20150522
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./configure && make && make install
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@ -51,9 +51,9 @@ Full installation of GNU Parallel is as simple as:
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If you are not root you can add ~/bin to your path and install in
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~/bin and ~/share:
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wget http://ftpmirror.gnu.org/parallel/parallel-20150422.tar.bz2
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bzip2 -dc parallel-20150422.tar.bz2 | tar xvf -
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cd parallel-20150422
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wget http://ftpmirror.gnu.org/parallel/parallel-20150522.tar.bz2
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bzip2 -dc parallel-20150522.tar.bz2 | tar xvf -
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cd parallel-20150522
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./configure --prefix=$HOME && make && make install
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Or if your system lacks 'make' you can simply copy src/parallel
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20
configure
vendored
20
configure
vendored
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@ -1,6 +1,6 @@
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#! /bin/sh
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# Guess values for system-dependent variables and create Makefiles.
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# Generated by GNU Autoconf 2.69 for parallel 20150422.
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# Generated by GNU Autoconf 2.69 for parallel 20150522.
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#
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# Report bugs to <bug-parallel@gnu.org>.
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#
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@ -579,8 +579,8 @@ MAKEFLAGS=
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# Identity of this package.
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PACKAGE_NAME='parallel'
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PACKAGE_TARNAME='parallel'
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PACKAGE_VERSION='20150422'
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PACKAGE_STRING='parallel 20150422'
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PACKAGE_VERSION='20150522'
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PACKAGE_STRING='parallel 20150522'
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PACKAGE_BUGREPORT='bug-parallel@gnu.org'
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PACKAGE_URL=''
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@ -1203,7 +1203,7 @@ if test "$ac_init_help" = "long"; then
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# Omit some internal or obsolete options to make the list less imposing.
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# This message is too long to be a string in the A/UX 3.1 sh.
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cat <<_ACEOF
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\`configure' configures parallel 20150422 to adapt to many kinds of systems.
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\`configure' configures parallel 20150522 to adapt to many kinds of systems.
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Usage: $0 [OPTION]... [VAR=VALUE]...
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@ -1269,7 +1269,7 @@ fi
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if test -n "$ac_init_help"; then
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case $ac_init_help in
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short | recursive ) echo "Configuration of parallel 20150422:";;
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short | recursive ) echo "Configuration of parallel 20150522:";;
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esac
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cat <<\_ACEOF
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@ -1345,7 +1345,7 @@ fi
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test -n "$ac_init_help" && exit $ac_status
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if $ac_init_version; then
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cat <<\_ACEOF
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parallel configure 20150422
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parallel configure 20150522
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generated by GNU Autoconf 2.69
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Copyright (C) 2012 Free Software Foundation, Inc.
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@ -1362,7 +1362,7 @@ cat >config.log <<_ACEOF
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This file contains any messages produced by compilers while
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running configure, to aid debugging if configure makes a mistake.
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It was created by parallel $as_me 20150422, which was
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It was created by parallel $as_me 20150522, which was
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generated by GNU Autoconf 2.69. Invocation command line was
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$ $0 $@
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@ -2225,7 +2225,7 @@ fi
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# Define the identity of the package.
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PACKAGE='parallel'
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VERSION='20150422'
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VERSION='20150522'
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cat >>confdefs.h <<_ACEOF
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@ -2867,7 +2867,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
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# report actual input values of CONFIG_FILES etc. instead of their
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# values after options handling.
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ac_log="
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This file was extended by parallel $as_me 20150422, which was
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This file was extended by parallel $as_me 20150522, which was
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generated by GNU Autoconf 2.69. Invocation command line was
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CONFIG_FILES = $CONFIG_FILES
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@ -2929,7 +2929,7 @@ _ACEOF
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cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
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ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
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ac_cs_version="\\
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parallel config.status 20150422
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parallel config.status 20150522
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configured by $0, generated by GNU Autoconf 2.69,
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with options \\"\$ac_cs_config\\"
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AC_INIT([parallel], [20150422], [bug-parallel@gnu.org])
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AC_INIT([parallel], [20150522], [bug-parallel@gnu.org])
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AM_INIT_AUTOMAKE([-Wall -Werror foreign])
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AC_CONFIG_HEADERS([config.h])
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AC_CONFIG_FILES([
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@ -4,7 +4,7 @@
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Check that documentation is updated (compare to web):
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Fixet for 20150422
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Fixet for 20150522
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git diff last-release-commit
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Unmodified beta since last version => production
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Unmodified alpha since last version => beta
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Summary: Shell tool for executing jobs in parallel
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Name: parallel
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Version: 20150422
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Version: 20150522
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Release: 1
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License: GPL
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Group: Productivity/File utilities
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use strict;
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use Getopt::Long;
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$Global::progname="niceload";
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$Global::version = 20150422;
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$Global::version = 20150522;
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Getopt::Long::Configure("bundling","require_order");
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get_options_from_array(\@ARGV) || die_usage();
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if($opt::version) {
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sub init_globals {
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# Defaults:
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$Global::version = 20150424;
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$Global::version = 20150522;
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$Global::progname = 'parallel';
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$Global::infinity = 2**31;
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$Global::debug = 0;
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2
src/sql
2
src/sql
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exit ($err);
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sub parse_options {
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$Global::version = 20150422;
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$Global::version = 20150522;
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$Global::progname = 'sql';
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# This must be done first as this may exec myself
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@ -932,7 +932,7 @@ This helps funding further development; and it won't cost you a cent.
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If you pay 10000 EUR you should feel free to use GNU Parallel without citing.
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parallel --version
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GNU parallel 20150422
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GNU parallel 20150522
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Copyright (C) 2007,2008,2009,2010,2011,2012,2013,2014,2015 Ole Tange
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and Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
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@ -944,7 +944,7 @@ Web site: http://www.gnu.org/software/parallel
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When using programs that use GNU Parallel to process data for publication
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please cite as described in 'parallel --bibtex'.
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parallel --minversion 20130722 && echo Your version is at least 20130722.
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20150422
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20150522
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Your version is at least 20130722.
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parallel --bibtex
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Academic tradition requires you to cite works you base your article on.
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@ -952,17 +952,17 @@ When using programs that use GNU Parallel to process data for publication
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please cite:
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@article{Tange2011a,
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title = {GNU Parallel - The Command-Line Power Tool},
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author = {O. Tange},
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address = {Frederiksberg, Denmark},
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journal = {;login: The USENIX Magazine},
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month = {Feb},
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number = {1},
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volume = {36},
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url = {http://www.gnu.org/s/parallel},
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year = {2011},
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pages = {42-47}
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doi = {10.5281/zenodo.16303}
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title = {GNU Parallel - The Command-Line Power Tool},
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author = {O. Tange},
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address = {Frederiksberg, Denmark},
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journal = {;login: The USENIX Magazine},
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month = {Feb},
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number = {1},
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volume = {36},
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url = {http://www.gnu.org/s/parallel},
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year = {2011},
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pages = {42-47}
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doi = {10.5281/zenodo.16303}
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}
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(Feel free to use \nocite{Tange2011a})
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