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Released as 20170322 ('MyTag')

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Ole Tange 2017-03-21 23:31:46 +01:00
parent 05afa7ec65
commit 3d9baf9275
8 changed files with 113 additions and 33 deletions
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63
NEWS
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@ -1,3 +1,66 @@
20170322
* --rpl can now take arguments by adding '(regexp)' in the replacement
string.
* Vote for GNU Parallel's community ads on
http://meta.unix.stackexchange.com/a/4356/2972
http://meta.askubuntu.com/a/16750/22307
http://meta.serverfault.com/a/9040/45704
* GNU Parallel was cited in: shmlast: An improved implementation of
Conditional Reciprocal Best Hits with LAST and Python
https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7
* GNU Parallel was cited in: Prediction of relativistic electron flux
in the Earth’s outer radiation belt at geostationary orbit by
adaptive methods
https://link.springer.com/article/10.1134/S0016793217010108
* GNU Parallel was cited in: Proper experimental design requires
randomization/balancing of molecular ecology experiments
http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
* GNU Parallel was cited in: Higher likelihood of multiple bit-flips
due to neutron-induced strikes on logic gates
https://arxiv.org/pdf/1612.08239.pdf
* GNU Parallel was cited in: A Monte Carlo Resampling Approach for the
Calculation of Hybrid Classical and Quantum Free Energies
http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
* GNU Parallel was cited in: Learning string distance with smoothing
for OCR spelling correction
https://link.springer.com/article/10.1007/s11042-016-4185-5
* GNU Parallel was cited in: The Breakdown of String Perturbation
Theory for Many External Particles
https://arxiv.org/pdf/1611.08003.pdf
* GNU Parallel was cited in: Large-scale benchmarking reveals false
discoveries and count transformation sensitivity in 16S rRNA gene
amplicon data analysis methods used in microbiome studies
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8
* GNU Parallel was cited in: Operations Research Applications in
Nuclear Energy
https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
* GNU Parallel was cited in: Parallel Computing: GNU Parallel
http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
* Stig Sandbeck Mathisen: Change All The Passwords (Again)
http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
* Trabalhando como Paralelismo no Bash usando o GNU Parallel
http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/
* GNU parallel と SQL*Loader 組み合わせ実行例
https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader
* Bug fixes and man page updates.
20170222 20170222
* env_parallel now supports /bin/sh, ash, dash. * env_parallel now supports /bin/sh, ash, dash.

12
README
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@ -44,9 +44,9 @@ document.
Full installation of GNU Parallel is as simple as: Full installation of GNU Parallel is as simple as:
wget http://ftpmirror.gnu.org/parallel/parallel-20170222.tar.bz2 wget http://ftpmirror.gnu.org/parallel/parallel-20170322.tar.bz2
bzip2 -dc parallel-20170222.tar.bz2 | tar xvf - bzip2 -dc parallel-20170322.tar.bz2 | tar xvf -
cd parallel-20170222 cd parallel-20170322
./configure && make && sudo make install ./configure && make && sudo make install
@ -55,9 +55,9 @@ Full installation of GNU Parallel is as simple as:
If you are not root you can add ~/bin to your path and install in If you are not root you can add ~/bin to your path and install in
~/bin and ~/share: ~/bin and ~/share:
wget http://ftpmirror.gnu.org/parallel/parallel-20170222.tar.bz2 wget http://ftpmirror.gnu.org/parallel/parallel-20170322.tar.bz2
bzip2 -dc parallel-20170222.tar.bz2 | tar xvf - bzip2 -dc parallel-20170322.tar.bz2 | tar xvf -
cd parallel-20170222 cd parallel-20170322
./configure --prefix=$HOME && make && make install ./configure --prefix=$HOME && make && make install
Or if your system lacks 'make' you can simply copy src/parallel Or if your system lacks 'make' you can simply copy src/parallel

20
configure vendored
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@ -1,6 +1,6 @@
#! /bin/sh #! /bin/sh
# Guess values for system-dependent variables and create Makefiles. # Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for parallel 20170222. # Generated by GNU Autoconf 2.69 for parallel 20170322.
# #
# Report bugs to <bug-parallel@gnu.org>. # Report bugs to <bug-parallel@gnu.org>.
# #
@ -579,8 +579,8 @@ MAKEFLAGS=
# Identity of this package. # Identity of this package.
PACKAGE_NAME='parallel' PACKAGE_NAME='parallel'
PACKAGE_TARNAME='parallel' PACKAGE_TARNAME='parallel'
PACKAGE_VERSION='20170222' PACKAGE_VERSION='20170322'
PACKAGE_STRING='parallel 20170222' PACKAGE_STRING='parallel 20170322'
PACKAGE_BUGREPORT='bug-parallel@gnu.org' PACKAGE_BUGREPORT='bug-parallel@gnu.org'
PACKAGE_URL='' PACKAGE_URL=''
@ -1214,7 +1214,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing. # Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh. # This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF cat <<_ACEOF
\`configure' configures parallel 20170222 to adapt to many kinds of systems. \`configure' configures parallel 20170322 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]... Usage: $0 [OPTION]... [VAR=VALUE]...
@ -1281,7 +1281,7 @@ fi
if test -n "$ac_init_help"; then if test -n "$ac_init_help"; then
case $ac_init_help in case $ac_init_help in
short | recursive ) echo "Configuration of parallel 20170222:";; short | recursive ) echo "Configuration of parallel 20170322:";;
esac esac
cat <<\_ACEOF cat <<\_ACEOF
@ -1357,7 +1357,7 @@ fi
test -n "$ac_init_help" && exit $ac_status test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then if $ac_init_version; then
cat <<\_ACEOF cat <<\_ACEOF
parallel configure 20170222 parallel configure 20170322
generated by GNU Autoconf 2.69 generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc. Copyright (C) 2012 Free Software Foundation, Inc.
@ -1374,7 +1374,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake. running configure, to aid debugging if configure makes a mistake.
It was created by parallel $as_me 20170222, which was It was created by parallel $as_me 20170322, which was
generated by GNU Autoconf 2.69. Invocation command line was generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@ $ $0 $@
@ -2237,7 +2237,7 @@ fi
# Define the identity of the package. # Define the identity of the package.
PACKAGE='parallel' PACKAGE='parallel'
VERSION='20170222' VERSION='20170322'
cat >>confdefs.h <<_ACEOF cat >>confdefs.h <<_ACEOF
@ -2880,7 +2880,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their # report actual input values of CONFIG_FILES etc. instead of their
# values after options handling. # values after options handling.
ac_log=" ac_log="
This file was extended by parallel $as_me 20170222, which was This file was extended by parallel $as_me 20170322, which was
generated by GNU Autoconf 2.69. Invocation command line was generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES CONFIG_FILES = $CONFIG_FILES
@ -2942,7 +2942,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\ ac_cs_version="\\
parallel config.status 20170222 parallel config.status 20170322
configured by $0, generated by GNU Autoconf 2.69, configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\" with options \\"\$ac_cs_config\\"

2
configure.ac
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@ -1,4 +1,4 @@
AC_INIT([parallel], [20170222], [bug-parallel@gnu.org]) AC_INIT([parallel], [20170322], [bug-parallel@gnu.org])
AM_INIT_AUTOMAKE([-Wall -Werror foreign]) AM_INIT_AUTOMAKE([-Wall -Werror foreign])
AC_CONFIG_HEADERS([config.h]) AC_CONFIG_HEADERS([config.h])
AC_CONFIG_FILES([ AC_CONFIG_FILES([

43
doc/release_new_version
View file

@ -208,21 +208,38 @@ New in this release:
* --rpl can now take arguments by adding '(regexp)' in the replacement string. * --rpl can now take arguments by adding '(regexp)' in the replacement string.
https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader * Vote for GNU Parallel's community ads on
http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/ http://meta.unix.stackexchange.com/a/4356/2972
https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7 http://meta.askubuntu.com/a/16750/22307
https://link.springer.com/article/10.1134/S0016793217010108 http://meta.serverfault.com/a/9040/45704
http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
https://arxiv.org/pdf/1612.08239.pdf * GNU Parallel was cited in: shmlast: An improved implementation of Conditional Reciprocal Best Hits with LAST and Python https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7
http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
https://link.springer.com/article/10.1007/s11042-016-4185-5 * GNU Parallel was cited in: Prediction of relativistic electron flux in the Earth’s outer radiation belt at geostationary orbit by adaptive methods https://link.springer.com/article/10.1134/S0016793217010108
https://arxiv.org/pdf/1611.08003.pdf
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8 * GNU Parallel was cited in: Proper experimental design requires randomization/balancing of molecular ecology experiments http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
* GNU Parallel was cited in: Higher likelihood of multiple bit-flips due to neutron-induced strikes on logic gates https://arxiv.org/pdf/1612.08239.pdf
* GNU Parallel was cited in: A Monte Carlo Resampling Approach for the Calculation of Hybrid Classical and Quantum Free Energies http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
* GNU Parallel was cited in: Learning string distance with smoothing for OCR spelling correction https://link.springer.com/article/10.1007/s11042-016-4185-5
* GNU Parallel was cited in: The Breakdown of String Perturbation Theory for Many External Particles https://arxiv.org/pdf/1611.08003.pdf
* GNU Parallel was cited in: Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8
* GNU Parallel was cited in: Operations Research Applications in Nuclear Energy https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
* GNU Parallel was cited in: Parallel Computing: GNU Parallel http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
* Stig Sandbeck Mathisen: Change All The Passwords (Again) http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
* Trabalhando como Paralelismo no Bash usando o GNU Parallel http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/
* GNU parallel と SQL*Loader 組み合わせ実行例https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader
https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
* <<Possibly http://link.springer.com/chapter/10.1007%2F978-3-319-22053-6_46>> * <<Possibly http://link.springer.com/chapter/10.1007%2F978-3-319-22053-6_46>>

2
src/niceload
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@ -24,7 +24,7 @@
use strict; use strict;
use Getopt::Long; use Getopt::Long;
$Global::progname="niceload"; $Global::progname="niceload";
$Global::version = 20170223; $Global::version = 20170322;
Getopt::Long::Configure("bundling","require_order"); Getopt::Long::Configure("bundling","require_order");
get_options_from_array(\@ARGV) || die_usage(); get_options_from_array(\@ARGV) || die_usage();
if($opt::version) { if($opt::version) {

2
src/parallel
View file

@ -1360,7 +1360,7 @@ sub check_invalid_option_combinations {
sub init_globals { sub init_globals {
# Defaults: # Defaults:
$Global::version = 20170311; $Global::version = 20170322;
$Global::progname = 'parallel'; $Global::progname = 'parallel';
$Global::infinity = 2**31; $Global::infinity = 2**31;
$Global::debug = 0; $Global::debug = 0;

2
src/sql
View file

@ -576,7 +576,7 @@ $Global::Initfile && unlink $Global::Initfile;
exit ($err); exit ($err);
sub parse_options { sub parse_options {
$Global::version = 20170223; $Global::version = 20170322;
$Global::progname = 'sql'; $Global::progname = 'sql';
# This must be done first as this may exec myself # This must be done first as this may exec myself