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https://git.savannah.gnu.org/git/parallel.git
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parallel: Code reorg.
This commit is contained in:
Ole Tange
parent
f21641733a
commit
3f372fe259
392
src/parallel
392
src/parallel
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@ -109,210 +109,16 @@ if($opt::filter_hosts and (@opt::sshlogin or @opt::sshloginfile)) {
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filter_hosts();
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filter_hosts();
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}
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}
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sub filter_hosts {
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my(@cores, @cpus, @maxline, @echo);
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while (my ($host, $sshlogin) = each %Global::host) {
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# The 'true' is used to get the $host out later
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my $sshcmd = "true $host;" . $sshlogin->sshcommand()." ".$sshlogin->serverlogin();
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push(@cores, $host."\t".$sshcmd." parallel --number-of-cores\n");
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push(@cpus, $host."\t".$sshcmd." parallel --number-of-cpus\n");
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push(@maxline, $host."\t".$sshcmd." parallel --max-line-length-allowed\n");
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# 'echo' is used to get the best possible value for an ssh login time
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push(@echo, $host."\t".$sshcmd." echo\n");
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}
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my ($fh, $tmpfile) = ::tempfile(SUFFIX => ".ssh");
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print $fh @cores, @cpus, @maxline, @echo;
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close $fh;
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# --timeout 5: Setting up an SSH connection and running a simple
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# command should never take > 5 sec.
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# --delay 0.1: If multiple sshlogins use the same proxy the delay
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# will make it less likely to overload the ssh daemon.
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# --retries 3: If the ssh daemon it overloaded, try 3 times
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my $cmd = "cat $tmpfile | $0 -j0 --timeout 5 -s 1000 --joblog - --plain --delay 0.1 --retries 3 --tag --tagstring {1} --colsep '\t' -k eval {2} 2>/dev/null";
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::debug($cmd."\n");
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open(my $host_fh, "-|", $cmd) || ::die_bug("parallel host check: $cmd");
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my (%ncores, %ncpus, %time_to_login, %maxlen, %echo, @down_hosts);
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while(<$host_fh>) {
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chomp;
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my @col = split /\t/, $_;
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if(defined $col[6]) {
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# This is a line from --joblog
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# seq host time spent sent received exit signal command
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# 2 : 1372607672.654 0.675 0 0 0 0 eval true\ m\;ssh\ m\ parallel\ --number-of-cores
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if($col[0] eq "Seq" and $col[1] eq "Host" and
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$col[2] eq "Starttime" and $col[3] eq "Runtime") {
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# Header => skip
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next;
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}
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# Get server from: eval true server\;
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$col[8] =~ /eval true..([^;]+).;/ or ::die_bug("col8 does not contain host: $col[8]");
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my $host = $1;
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$host =~ s/\\//g;
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$Global::host{$host} or next;
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if($col[6] eq "255" or $col[7] eq "15") {
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# exit == 255 or signal == 15: ssh failed
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# Remove sshlogin
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::debug("--filtered $host\n");
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push(@down_hosts, $host);
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@down_hosts = uniq(@down_hosts);
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} elsif($col[6] eq "127") {
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# signal == 127: parallel not installed remote
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# Set ncpus and ncores = 1
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::warning("Could not figure out ",
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"number of cpus on $host. Using 1.\n");
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$ncores{$host} = 1;
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$ncpus{$host} = 1;
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$maxlen{$host} = Limits::Command::max_length();
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} elsif($col[0] =~ /^\d+$/ and $Global::host{$host}) {
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# Remember how log it took to log in
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# 2 : 1372607672.654 0.675 0 0 0 0 eval true\ m\;ssh\ m\ echo
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$time_to_login{$host} = ::min($time_to_login{$host},$col[3]);
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} else {
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::die_bug("host check unmatched long jobline: $_");
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}
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} elsif($Global::host{$col[0]}) {
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# This output from --number-of-cores, --number-of-cpus,
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# --max-line-length-allowed
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# ncores: server 8
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# ncpus: server 2
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# maxlen: server 131071
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if(not $ncores{$col[0]}) {
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$ncores{$col[0]} = $col[1];
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} elsif(not $ncpus{$col[0]}) {
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$ncpus{$col[0]} = $col[1];
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} elsif(not $maxlen{$col[0]}) {
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$maxlen{$col[0]} = $col[1];
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} elsif(not $echo{$col[0]}) {
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$echo{$col[0]} = $col[1];
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} elsif(m/perl: warning:|LANGUAGE =|LC_ALL =|LANG =|are supported and installed/) {
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# Skip these:
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# perl: warning: Setting locale failed.
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# perl: warning: Please check that your locale settings:
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# LANGUAGE = (unset),
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# LC_ALL = (unset),
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# LANG = "en_US.UTF-8"
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# are supported and installed on your system.
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# perl: warning: Falling back to the standard locale ("C").
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} else {
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::die_bug("host check too many col0: $_");
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}
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} else {
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::die_bug("host check unmatched short jobline ($col[0]): $_");
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}
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}
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close $host_fh;
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unlink $tmpfile;
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delete @Global::host{@down_hosts};
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@down_hosts and ::warning("Removed @down_hosts\n");
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while (my ($sshlogin, $obj) = each %Global::host) {
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$ncpus{$sshlogin} or ::die_bug("ncpus missing: ".$obj->serverlogin());
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$ncores{$sshlogin} or ::die_bug("ncores missing: ".$obj->serverlogin());
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$time_to_login{$sshlogin} or ::die_bug("time_to_login missing: ".$obj->serverlogin());
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$maxlen{$sshlogin} or ::die_bug("maxlen missing: ".$obj->serverlogin());
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if($opt::use_cpus_instead_of_cores) {
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$obj->set_ncpus($ncpus{$sshlogin});
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} else {
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$obj->set_ncpus($ncores{$sshlogin});
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}
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$obj->set_time_to_login($time_to_login{$sshlogin});
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$obj->set_maxlength($maxlen{$sshlogin});
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::debug("Timing from -S:$sshlogin ncpus:$ncpus{$sshlogin} ncores:$ncores{$sshlogin} ",
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"time_to_login:$time_to_login{$sshlogin} maxlen:$maxlen{$sshlogin}\n");
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}
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}
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if($opt::nonall or $opt::onall) {
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if($opt::nonall or $opt::onall) {
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onall();
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onall();
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wait_and_exit(min(undef_as_zero($Global::exitstatus),254));
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wait_and_exit(min(undef_as_zero($Global::exitstatus),254));
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}
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}
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sub onall {
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# TODO --transfer foo/./bar --cleanup
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# TODO --transfer foo/./bar --cleanup
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# multiple --transfer and --basefile with different /./
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# multiple --transfer and --basefile with different /./
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sub tmp_joblog {
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my $joblog = shift;
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if(not defined $joblog) {
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return undef;
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}
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my ($fh, $tmpfile) = ::tempfile(SUFFIX => ".log");
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close $fh;
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return $tmpfile;
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}
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# Copy all @fhlist into tempfiles
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my @argfiles = ();
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for my $fh (@fhlist) {
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my ($outfh, $name) = ::tempfile(SUFFIX => ".all", UNLINK => 1);
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print $outfh (<$fh>);
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close $outfh;
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push @argfiles, $name;
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}
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if(@opt::basefile) { setup_basefile(); }
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# for each sshlogin do:
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# parallel -S $sshlogin $command :::: @argfiles
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#
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# Pass some of the options to the sub-parallels, not all of them as
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# -P should only go to the first, and -S should not be copied at all.
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my $options =
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join(" ",
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((defined $opt::P) ? "-P $opt::P" : ""),
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((defined $opt::u) ? "-u" : ""),
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((defined $opt::group) ? "-g" : ""),
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((defined $opt::keeporder) ? "--keeporder" : ""),
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((defined $opt::D) ? "-D" : ""),
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((defined $opt::plain) ? "--plain" : ""),
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((defined $opt::max_chars) ? "--max-chars ".$opt::max_chars : ""),
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);
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my $suboptions =
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join(" ",
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((defined $opt::u) ? "-u" : ""),
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((defined $opt::group) ? "-g" : ""),
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((defined $opt::files) ? "--files" : ""),
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((defined $opt::keeporder) ? "--keeporder" : ""),
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((defined $opt::colsep) ? "--colsep ".shell_quote($opt::colsep) : ""),
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((@opt::v) ? "-vv" : ""),
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((defined $opt::D) ? "-D" : ""),
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((defined $opt::timeout) ? "--timeout ".$opt::timeout : ""),
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((defined $opt::plain) ? "--plain" : ""),
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((defined $opt::retries) ? "--retries ".$opt::retries : ""),
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((defined $opt::max_chars) ? "--max-chars ".$opt::max_chars : ""),
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(@opt::env ? map { "--env ".::shell_quote_scalar($_) } @opt::env : ""),
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);
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::debug("| $0 $options\n");
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open(my $parallel_fh, "|-", "$0 --no-notice -j0 $options") ||
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::die_bug("This does not run GNU Parallel: $0 $options");
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my @joblogs;
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for my $host (sort keys %Global::host) {
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my $sshlogin = $Global::host{$host};
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my $joblog = tmp_joblog($opt::joblog);
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if($joblog) {
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push @joblogs, $joblog;
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$joblog = "--joblog $joblog";
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}
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print $parallel_fh "$0 $suboptions -j1 $joblog ".
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((defined $opt::tag) ?
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"--tagstring ".shell_quote_scalar($sshlogin->string()) : "").
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" -S ". shell_quote_scalar($sshlogin->string())." ".
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shell_quote_scalar($command)." :::: @argfiles\n";
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}
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close $parallel_fh;
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$Global::exitstatus = $? >> 8;
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debug("--onall exitvalue ",$?);
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if(@opt::basefile) { cleanup_basefile(); }
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unlink(@argfiles);
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my %seen;
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for my $joblog (@joblogs) {
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# Append to $joblog
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open(my $fh, "<", $joblog) || ::die_bug("Cannot open tmp joblog $joblog");
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# Skip first line (header);
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<$fh>;
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print $Global::joblog (<$fh>);
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close $fh;
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unlink($joblog);
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}
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}
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$Global::JobQueue = JobQueue->new(
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$Global::JobQueue = JobQueue->new(
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$command,\@fhlist,$Global::ContextReplace,$number_of_args,\@Global::ret_files);
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$command,\@fhlist,$Global::ContextReplace,$number_of_args,\@Global::ret_files);
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if($opt::pipe and @opt::a) {
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if($opt::pipe and @opt::a) {
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@ -2162,6 +1968,201 @@ sub cleanup_basefile {
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print `$cmd`;
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print `$cmd`;
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}
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}
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sub filter_hosts {
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my(@cores, @cpus, @maxline, @echo);
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while (my ($host, $sshlogin) = each %Global::host) {
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# The 'true' is used to get the $host out later
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my $sshcmd = "true $host;" . $sshlogin->sshcommand()." ".$sshlogin->serverlogin();
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push(@cores, $host."\t".$sshcmd." parallel --number-of-cores\n");
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push(@cpus, $host."\t".$sshcmd." parallel --number-of-cpus\n");
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push(@maxline, $host."\t".$sshcmd." parallel --max-line-length-allowed\n");
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# 'echo' is used to get the best possible value for an ssh login time
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push(@echo, $host."\t".$sshcmd." echo\n");
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}
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my ($fh, $tmpfile) = ::tempfile(SUFFIX => ".ssh");
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print $fh @cores, @cpus, @maxline, @echo;
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close $fh;
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# --timeout 5: Setting up an SSH connection and running a simple
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# command should never take > 5 sec.
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# --delay 0.1: If multiple sshlogins use the same proxy the delay
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# will make it less likely to overload the ssh daemon.
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# --retries 3: If the ssh daemon it overloaded, try 3 times
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my $cmd = "cat $tmpfile | $0 -j0 --timeout 5 -s 1000 --joblog - --plain --delay 0.1 --retries 3 --tag --tagstring {1} --colsep '\t' -k eval {2} 2>/dev/null";
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::debug($cmd."\n");
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open(my $host_fh, "-|", $cmd) || ::die_bug("parallel host check: $cmd");
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my (%ncores, %ncpus, %time_to_login, %maxlen, %echo, @down_hosts);
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while(<$host_fh>) {
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chomp;
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my @col = split /\t/, $_;
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if(defined $col[6]) {
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# This is a line from --joblog
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# seq host time spent sent received exit signal command
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# 2 : 1372607672.654 0.675 0 0 0 0 eval true\ m\;ssh\ m\ parallel\ --number-of-cores
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if($col[0] eq "Seq" and $col[1] eq "Host" and
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$col[2] eq "Starttime" and $col[3] eq "Runtime") {
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# Header => skip
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next;
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}
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# Get server from: eval true server\;
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$col[8] =~ /eval true..([^;]+).;/ or ::die_bug("col8 does not contain host: $col[8]");
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my $host = $1;
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$host =~ s/\\//g;
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$Global::host{$host} or next;
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if($col[6] eq "255" or $col[7] eq "15") {
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# exit == 255 or signal == 15: ssh failed
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# Remove sshlogin
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::debug("--filtered $host\n");
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push(@down_hosts, $host);
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@down_hosts = uniq(@down_hosts);
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} elsif($col[6] eq "127") {
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# signal == 127: parallel not installed remote
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# Set ncpus and ncores = 1
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::warning("Could not figure out ",
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"number of cpus on $host. Using 1.\n");
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$ncores{$host} = 1;
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$ncpus{$host} = 1;
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$maxlen{$host} = Limits::Command::max_length();
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} elsif($col[0] =~ /^\d+$/ and $Global::host{$host}) {
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# Remember how log it took to log in
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# 2 : 1372607672.654 0.675 0 0 0 0 eval true\ m\;ssh\ m\ echo
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$time_to_login{$host} = ::min($time_to_login{$host},$col[3]);
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} else {
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::die_bug("host check unmatched long jobline: $_");
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}
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} elsif($Global::host{$col[0]}) {
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# This output from --number-of-cores, --number-of-cpus,
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# --max-line-length-allowed
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# ncores: server 8
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# ncpus: server 2
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# maxlen: server 131071
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if(not $ncores{$col[0]}) {
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$ncores{$col[0]} = $col[1];
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} elsif(not $ncpus{$col[0]}) {
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$ncpus{$col[0]} = $col[1];
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} elsif(not $maxlen{$col[0]}) {
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$maxlen{$col[0]} = $col[1];
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} elsif(not $echo{$col[0]}) {
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$echo{$col[0]} = $col[1];
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} elsif(m/perl: warning:|LANGUAGE =|LC_ALL =|LANG =|are supported and installed/) {
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# Skip these:
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# perl: warning: Setting locale failed.
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# perl: warning: Please check that your locale settings:
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# LANGUAGE = (unset),
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# LC_ALL = (unset),
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# LANG = "en_US.UTF-8"
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# are supported and installed on your system.
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# perl: warning: Falling back to the standard locale ("C").
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} else {
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::die_bug("host check too many col0: $_");
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}
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} else {
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::die_bug("host check unmatched short jobline ($col[0]): $_");
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}
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}
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close $host_fh;
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unlink $tmpfile;
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delete @Global::host{@down_hosts};
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@down_hosts and ::warning("Removed @down_hosts\n");
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while (my ($sshlogin, $obj) = each %Global::host) {
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||||||
|
$ncpus{$sshlogin} or ::die_bug("ncpus missing: ".$obj->serverlogin());
|
||||||
|
$ncores{$sshlogin} or ::die_bug("ncores missing: ".$obj->serverlogin());
|
||||||
|
$time_to_login{$sshlogin} or ::die_bug("time_to_login missing: ".$obj->serverlogin());
|
||||||
|
$maxlen{$sshlogin} or ::die_bug("maxlen missing: ".$obj->serverlogin());
|
||||||
|
if($opt::use_cpus_instead_of_cores) {
|
||||||
|
$obj->set_ncpus($ncpus{$sshlogin});
|
||||||
|
} else {
|
||||||
|
$obj->set_ncpus($ncores{$sshlogin});
|
||||||
|
}
|
||||||
|
$obj->set_time_to_login($time_to_login{$sshlogin});
|
||||||
|
$obj->set_maxlength($maxlen{$sshlogin});
|
||||||
|
::debug("Timing from -S:$sshlogin ncpus:$ncpus{$sshlogin} ncores:$ncores{$sshlogin} ",
|
||||||
|
"time_to_login:$time_to_login{$sshlogin} maxlen:$maxlen{$sshlogin}\n");
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
sub onall {
|
||||||
|
sub tmp_joblog {
|
||||||
|
my $joblog = shift;
|
||||||
|
if(not defined $joblog) {
|
||||||
|
return undef;
|
||||||
|
}
|
||||||
|
my ($fh, $tmpfile) = ::tempfile(SUFFIX => ".log");
|
||||||
|
close $fh;
|
||||||
|
return $tmpfile;
|
||||||
|
}
|
||||||
|
# Copy all @fhlist into tempfiles
|
||||||
|
my @argfiles = ();
|
||||||
|
for my $fh (@fhlist) {
|
||||||
|
my ($outfh, $name) = ::tempfile(SUFFIX => ".all", UNLINK => 1);
|
||||||
|
print $outfh (<$fh>);
|
||||||
|
close $outfh;
|
||||||
|
push @argfiles, $name;
|
||||||
|
}
|
||||||
|
if(@opt::basefile) { setup_basefile(); }
|
||||||
|
# for each sshlogin do:
|
||||||
|
# parallel -S $sshlogin $command :::: @argfiles
|
||||||
|
#
|
||||||
|
# Pass some of the options to the sub-parallels, not all of them as
|
||||||
|
# -P should only go to the first, and -S should not be copied at all.
|
||||||
|
my $options =
|
||||||
|
join(" ",
|
||||||
|
((defined $opt::P) ? "-P $opt::P" : ""),
|
||||||
|
((defined $opt::u) ? "-u" : ""),
|
||||||
|
((defined $opt::group) ? "-g" : ""),
|
||||||
|
((defined $opt::keeporder) ? "--keeporder" : ""),
|
||||||
|
((defined $opt::D) ? "-D" : ""),
|
||||||
|
((defined $opt::plain) ? "--plain" : ""),
|
||||||
|
((defined $opt::max_chars) ? "--max-chars ".$opt::max_chars : ""),
|
||||||
|
);
|
||||||
|
my $suboptions =
|
||||||
|
join(" ",
|
||||||
|
((defined $opt::u) ? "-u" : ""),
|
||||||
|
((defined $opt::group) ? "-g" : ""),
|
||||||
|
((defined $opt::files) ? "--files" : ""),
|
||||||
|
((defined $opt::keeporder) ? "--keeporder" : ""),
|
||||||
|
((defined $opt::colsep) ? "--colsep ".shell_quote($opt::colsep) : ""),
|
||||||
|
((@opt::v) ? "-vv" : ""),
|
||||||
|
((defined $opt::D) ? "-D" : ""),
|
||||||
|
((defined $opt::timeout) ? "--timeout ".$opt::timeout : ""),
|
||||||
|
((defined $opt::plain) ? "--plain" : ""),
|
||||||
|
((defined $opt::retries) ? "--retries ".$opt::retries : ""),
|
||||||
|
((defined $opt::max_chars) ? "--max-chars ".$opt::max_chars : ""),
|
||||||
|
(@opt::env ? map { "--env ".::shell_quote_scalar($_) } @opt::env : ""),
|
||||||
|
);
|
||||||
|
::debug("| $0 $options\n");
|
||||||
|
open(my $parallel_fh, "|-", "$0 --no-notice -j0 $options") ||
|
||||||
|
::die_bug("This does not run GNU Parallel: $0 $options");
|
||||||
|
my @joblogs;
|
||||||
|
for my $host (sort keys %Global::host) {
|
||||||
|
my $sshlogin = $Global::host{$host};
|
||||||
|
my $joblog = tmp_joblog($opt::joblog);
|
||||||
|
if($joblog) {
|
||||||
|
push @joblogs, $joblog;
|
||||||
|
$joblog = "--joblog $joblog";
|
||||||
|
}
|
||||||
|
print $parallel_fh "$0 $suboptions -j1 $joblog ".
|
||||||
|
((defined $opt::tag) ?
|
||||||
|
"--tagstring ".shell_quote_scalar($sshlogin->string()) : "").
|
||||||
|
" -S ". shell_quote_scalar($sshlogin->string())." ".
|
||||||
|
shell_quote_scalar($command)." :::: @argfiles\n";
|
||||||
|
}
|
||||||
|
close $parallel_fh;
|
||||||
|
$Global::exitstatus = $? >> 8;
|
||||||
|
debug("--onall exitvalue ",$?);
|
||||||
|
if(@opt::basefile) { cleanup_basefile(); }
|
||||||
|
unlink(@argfiles);
|
||||||
|
my %seen;
|
||||||
|
for my $joblog (@joblogs) {
|
||||||
|
# Append to $joblog
|
||||||
|
open(my $fh, "<", $joblog) || ::die_bug("Cannot open tmp joblog $joblog");
|
||||||
|
# Skip first line (header);
|
||||||
|
<$fh>;
|
||||||
|
print $Global::joblog (<$fh>);
|
||||||
|
close $fh;
|
||||||
|
unlink($joblog);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
sub __SIGNAL_HANDLING__ {}
|
sub __SIGNAL_HANDLING__ {}
|
||||||
|
|
||||||
sub save_original_signal_handler {
|
sub save_original_signal_handler {
|
||||||
|
|
@ -2275,7 +2276,6 @@ sub reaper {
|
||||||
return $children_reaped;
|
return $children_reaped;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
sub __USAGE__ {}
|
sub __USAGE__ {}
|
||||||
|
|
||||||
sub wait_and_exit {
|
sub wait_and_exit {
|
||||||
|
|
|
||||||
Loading…
Reference in a new issue