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Fixed bug #44460: --files --tag does not work.

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This commit is contained in:
Ole Tange 2015-03-28 12:14:30 +01:00
parent af9dd80129
commit 41e2f0a7f9
9 changed files with 115 additions and 75 deletions
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6
doc/release_new_version
View file

@ -223,6 +223,8 @@ New in this release:
* GNU Parallel was cited in: Bayesian inference of protein structure from chemical shift data https://peerj.com/articles/861/ * GNU Parallel was cited in: Bayesian inference of protein structure from chemical shift data https://peerj.com/articles/861/
* <<afventer>> Comparing the CarbonTracker and TM5-4DVar data assimilation systems for CO2 surface flux inversions http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
* <<afventer opdatering>> CIDER: a pipeline for detecting waves of coordinated transcriptional regulation in gene expression time-course data http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf * <<afventer opdatering>> CIDER: a pipeline for detecting waves of coordinated transcriptional regulation in gene expression time-course data http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
* <<afventer opdatering>> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345 * <<afventer opdatering>> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345
@ -231,6 +233,10 @@ taxator-tk http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/ (check it)
* GNU Parallel was used in: landsat-gifworks https://github.com/KAPPS-/landsat-gifworks * GNU Parallel was used in: landsat-gifworks https://github.com/KAPPS-/landsat-gifworks
* GNU Parallel was used in: https://github.com/exascience/elprep
* Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/
* GNU Parallel (Sebuah Uji Coba) http://kaka.prakasa.my.id/2014/09/04/gnu-parallel-sebuah-uji-coba/ * GNU Parallel (Sebuah Uji Coba) http://kaka.prakasa.my.id/2014/09/04/gnu-parallel-sebuah-uji-coba/
* Bug fixes and man page updates. * Bug fixes and man page updates.

59
src/parallel
View file

@ -1051,7 +1051,7 @@ sub parse_options {
sub init_globals { sub init_globals {
# Defaults: # Defaults:
$Global::version = 20150323; $Global::version = 20150324;
$Global::progname = 'parallel'; $Global::progname = 'parallel';
$Global::infinity = 2**31; $Global::infinity = 2**31;
$Global::debug = 0; $Global::debug = 0;
@ -1195,7 +1195,7 @@ sub record_env {
if(open(my $vars_fh, ">", $ignore_filename)) { if(open(my $vars_fh, ">", $ignore_filename)) {
print $vars_fh map { $_,"\n" } keys %ENV; print $vars_fh map { $_,"\n" } keys %ENV;
} else { } else {
::error("Cannot write to $ignore_filename\n"); ::error("Cannot write to $ignore_filename.\n");
::wait_and_exit(255); ::wait_and_exit(255);
} }
} }
@ -1688,6 +1688,22 @@ sub __RUNNING_THE_JOBS_AND_PRINTING_PROGRESS__ {}
# $Global::host{$sshlogin} = Pointer to SSHLogin-object # $Global::host{$sshlogin} = Pointer to SSHLogin-object
# $Global::total_running = total number of running jobs # $Global::total_running = total number of running jobs
# $Global::total_started = total jobs started # $Global::total_started = total jobs started
# $Global::tty_taken = is the tty in use by a running job?
# $Global::max_procs_file = filename if --jobs is given a filename
# $Global::JobQueue = JobQueue object for the queue of jobs
# $Global::timeoutq = queue of times where jobs timeout
# $Global::newest_job = Job object of the most recent job started
# $Global::newest_starttime = timestamp of $Global::newest_job
# @Global::sshlogin
# $Global::minimal_command_line_length = minimum length supported by all sshlogins
# $Global::start_no_new_jobs = should more jobs be started?
# $Global::original_stderr = file handle for STDERR when the program started
# $Global::total_started = total number of jobs started
# $Global::envvar = string to set the shell environment variables
# $Global::joblog = filehandle of joblog
# $Global::debug = Is debugging on?
# $Global::exitstatus = status code of GNU Parallel
# $Global::quoting = quote the command to run
sub init_run_jobs { sub init_run_jobs {
# Set Global variables and progress signal handlers # Set Global variables and progress signal handlers
@ -1704,21 +1720,22 @@ sub init_run_jobs {
{ {
my $last_time; my $last_time;
my %last_mtime; my %last_mtime;
my $max_procs_file_last_mod;
sub changed_procs_file { sub changed_procs_file {
# If --jobs is a file and it is modfied: # If --jobs is a file and it is modfied:
# Force recomputing of max_jobs_running for each $sshlogin # Force recomputing of max_jobs_running for each $sshlogin
# Uses: # Uses:
# $Global::max_procs_file # $Global::max_procs_file
# $Global::max_procs_file_last_mod
# %Global::host # %Global::host
# Returns: N/A # Returns: N/A
if($Global::max_procs_file) { if($Global::max_procs_file) {
# --jobs filename # --jobs filename
my $mtime = (stat($Global::max_procs_file))[9]; my $mtime = (stat($Global::max_procs_file))[9];
if($mtime > $Global::max_procs_file_last_mod) { $max_procs_file_last_mod ||= 0;
if($mtime > $max_procs_file_last_mod) {
# file changed: Force re-computing max_jobs_running # file changed: Force re-computing max_jobs_running
$Global::max_procs_file_last_mod = $mtime; $max_procs_file_last_mod = $mtime;
for my $sshlogin (values %Global::host) { for my $sshlogin (values %Global::host) {
$sshlogin->set_max_jobs_running(undef); $sshlogin->set_max_jobs_running(undef);
} }
@ -1947,7 +1964,6 @@ sub init_progress {
sub drain_job_queue { sub drain_job_queue {
# Uses: # Uses:
# $opt::progress # $opt::progress
# $Global::original_stderr
# $Global::total_running # $Global::total_running
# $Global::max_jobs_running # $Global::max_jobs_running
# %Global::running # %Global::running
@ -2510,7 +2526,7 @@ sub setup_basefile {
if($sshlogin->string() eq ":") { next } if($sshlogin->string() eq ":") { next }
for my $file (@opt::basefile) { for my $file (@opt::basefile) {
if($file !~ m:^/: and $opt::workdir eq "...") { if($file !~ m:^/: and $opt::workdir eq "...") {
::error("Work dir '...' will not work with relative basefiles\n"); ::error("Work dir '...' will not work with relative basefiles.\n");
::wait_and_exit(255); ::wait_and_exit(255);
} }
$workdir ||= Job->new("")->workdir(); $workdir ||= Job->new("")->workdir();
@ -4262,11 +4278,11 @@ sub compute_max_loadavg {
close $in_fh; close $in_fh;
$load = $self->compute_max_loadavg($opt_load_file); $load = $self->compute_max_loadavg($opt_load_file);
} else { } else {
::error("Cannot open $loadspec\n"); ::error("Cannot open $loadspec.\n");
::wait_and_exit(255); ::wait_and_exit(255);
} }
} else { } else {
::error("Parsing of --load failed\n"); ::error("Parsing of --load failed.\n");
::die_usage(); ::die_usage();
} }
if($load < 0.01) { if($load < 0.01) {
@ -4596,7 +4612,6 @@ sub user_requested_processes {
} }
} elsif (-f $opt_P) { } elsif (-f $opt_P) {
$Global::max_procs_file = $opt_P; $Global::max_procs_file = $opt_P;
$Global::max_procs_file_last_mod = (stat($Global::max_procs_file))[9];
if(open(my $in_fh, "<", $Global::max_procs_file)) { if(open(my $in_fh, "<", $Global::max_procs_file)) {
my $opt_P_file = join("",<$in_fh>); my $opt_P_file = join("",<$in_fh>);
close $in_fh; close $in_fh;
@ -6925,7 +6940,7 @@ sub files_print {
# If --compress: $in_fh must be closed first. # If --compress: $in_fh must be closed first.
close $self->fh($fdno,"w"); close $self->fh($fdno,"w");
if($? and $opt::compress) { if($? and $opt::compress) {
::error($opt::decompress_program." failed\n"); ::error($opt::decompress_program." failed.\n");
$self->set_exitstatus(255); $self->set_exitstatus(255);
} }
close $in_fh; close $in_fh;
@ -6938,7 +6953,7 @@ sub files_print {
unlink $self->fh($fdno,"unlink"); unlink $self->fh($fdno,"unlink");
} }
} elsif($fdno == 1 and $self->fh($fdno,"name")) { } elsif($fdno == 1 and $self->fh($fdno,"name")) {
print $out_fd $self->fh($fdno,"name"),"\n"; print $out_fd $self->tag(),$self->fh($fdno,"name"),"\n";
$self->add_returnsize(-s $self->fh($fdno,"name")); $self->add_returnsize(-s $self->fh($fdno,"name"));
} }
} }
@ -6952,7 +6967,7 @@ sub linebuffer_print {
# If the job is dead: close printing fh. Needed for --compress # If the job is dead: close printing fh. Needed for --compress
close $self->fh($fdno,"w"); close $self->fh($fdno,"w");
if($? and $opt::compress) { if($? and $opt::compress) {
::error($opt::decompress_program." failed\n"); ::error($opt::decompress_program." failed.\n");
$self->set_exitstatus(255); $self->set_exitstatus(255);
} }
if($opt::compress) { if($opt::compress) {
@ -7032,7 +7047,7 @@ sub tag_print {
my $buf; my $buf;
close $self->fh($fdno,"w"); close $self->fh($fdno,"w");
if($? and $opt::compress) { if($? and $opt::compress) {
::error($opt::decompress_program." failed\n"); ::error($opt::decompress_program." failed.\n");
$self->set_exitstatus(255); $self->set_exitstatus(255);
} }
seek $in_fh, 0, 0; seek $in_fh, 0, 0;
@ -7069,7 +7084,7 @@ sub normal_print {
my $buf; my $buf;
close $self->fh($fdno,"w"); close $self->fh($fdno,"w");
if($? and $opt::compress) { if($? and $opt::compress) {
::error($opt::decompress_program." failed\n"); ::error($opt::decompress_program." failed.\n");
$self->set_exitstatus(255); $self->set_exitstatus(255);
} }
seek $in_fh, 0, 0; seek $in_fh, 0, 0;
@ -7114,9 +7129,13 @@ sub print_joblog {
sub tag { sub tag {
my $self = shift; my $self = shift;
if(not defined $self->{'tag'}) { if($opt::tag or defined $opt::tagstring) {
$self->{'tag'} = $self->{'commandline'}-> if(not defined $self->{'tag'}) {
replace_placeholders([$opt::tagstring],0,0)."\t"; $self->{'tag'} = $self->{'commandline'}->
replace_placeholders([$opt::tagstring],0,0)."\t";
}
} else {
return "";
} }
return $self->{'tag'}; return $self->{'tag'};
} }
@ -8140,6 +8159,10 @@ sub tmux_length {
my $len = shift; my $len = shift;
if($opt::tmux) { if($opt::tmux) {
$ENV{'TMUX'} ||= "tmux"; $ENV{'TMUX'} ||= "tmux";
if(not ::which($ENV{'TMUX'})) {
::error($ENV{'TMUX'}." not found in \$PATH.\n");
::wait_and_exit(255);
}
my @out; my @out;
for my $l (1, 2020, 16320, 100000, $len) { for my $l (1, 2020, 16320, 100000, $len) {
my ($fh, $tmpfile) = ::tmpfile(SUFFIX => ".tmb"); my ($fh, $tmpfile) = ::tmpfile(SUFFIX => ".tmb");

10
src/parallel.pod
View file

@ -568,7 +568,7 @@ If I<eof-str> is omitted, there is no end of file string. If neither
B<-E> nor B<-e> is used, no end of file string is used. B<-E> nor B<-e> is used, no end of file string is used.
=item B<--env> I<var> =item B<--env> I<var> (alpha testing)
Copy environment variable I<var>. This will copy I<var> to the Copy environment variable I<var>. This will copy I<var> to the
environment that the command is run in. This is especially useful for environment that the command is run in. This is especially useful for
@ -1066,7 +1066,7 @@ B<--files> is often used with B<--pipe>.
See also: B<--recstart>, B<--recend>, B<--fifo>, B<--cat>, B<--pipepart>. See also: B<--recstart>, B<--recend>, B<--fifo>, B<--cat>, B<--pipepart>.
=item B<--pipepart> =item B<--pipepart> (alpha testing)
Pipe parts of a physical file. B<--pipepart> works similar to Pipe parts of a physical file. B<--pipepart> works similar to
B<--pipe>, but is much faster. It has a few limitations: B<--pipe>, but is much faster. It has a few limitations:
@ -1259,6 +1259,8 @@ Swap activity is computed as (swap-in)*(swap-out) which in practice is
a good value: swapping out is not a problem, swapping in is not a a good value: swapping out is not a problem, swapping in is not a
problem, but both swapping in and out usually indicates a problem. problem, but both swapping in and out usually indicates a problem.
B<--memfree> may give better results, so try using that first.
=item B<--record-env> =item B<--record-env>
@ -1350,7 +1352,9 @@ will generate the files:
foo/1/II/2/IIII/stderr foo/1/II/2/IIII/stderr
foo/1/II/2/IIII/stdout foo/1/II/2/IIII/stdout
See also B<--files>, B<--header>, B<--joblog>. If you do not want the dir structure, try B<--files> B<--tag> instead.
See also B<--files>, B<--tag>, B<--header>, B<--joblog>.
=item B<--resume> =item B<--resume>

3
testsuite/tests-to-run/parallel-local-0.3s.sh
View file

@ -90,4 +90,7 @@ echo '### bug #44614: --pipepart --header off by one'
parallel --pipepart -a /tmp/parallel_44616 -k --block 2 --regexp --recend 3'\n' 'echo foo; cat'; parallel --pipepart -a /tmp/parallel_44616 -k --block 2 --regexp --recend 3'\n' 'echo foo; cat';
rm /tmp/parallel_44616 rm /tmp/parallel_44616
echo '### TMUX not found'
TMUX=not-existing parallel --tmux echo ::: 1
EOF EOF

32
testsuite/wanted-results/parallel-local-0.3s
View file

@ -104,30 +104,30 @@ echo '### bug #44546: If --compress-program fails: fail'
### bug #44546: If --compress-program fails: fail ### bug #44546: If --compress-program fails: fail
parallel --line-buffer --compress-program false echo \;ls ::: /no-existing; echo $? parallel --line-buffer --compress-program false echo \;ls ::: /no-existing; echo $?
1 1
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel --tag --line-buffer --compress-program false echo \;ls ::: /no-existing; echo $? parallel --tag --line-buffer --compress-program false echo \;ls ::: /no-existing; echo $?
1 1
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel: Error: false -dc failed parallel: Error: false -dc failed.
(parallel --files --tag --line-buffer --compress-program false echo \;sleep 1\;ls ::: /no-existing; echo $?) | tail -n1 (parallel --files --tag --line-buffer --compress-program false echo \;sleep 1\;ls ::: /no-existing; echo $?) | tail -n1
1 1
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel --tag --compress-program false echo \;ls ::: /no-existing; echo $? parallel --tag --compress-program false echo \;ls ::: /no-existing; echo $?
1 1
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel --line-buffer --compress-program false echo \;ls ::: /no-existing; echo $? parallel --line-buffer --compress-program false echo \;ls ::: /no-existing; echo $?
1 1
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel --compress-program false echo \;ls ::: /no-existing; echo $? parallel --compress-program false echo \;ls ::: /no-existing; echo $?
1 1
parallel: Error: false -dc failed parallel: Error: false -dc failed.
parallel: Error: false -dc failed parallel: Error: false -dc failed.
echo '### bug #44614: --pipepart --header off by one' echo '### bug #44614: --pipepart --header off by one'
### bug #44614: --pipepart --header off by one ### bug #44614: --pipepart --header off by one
seq 10 >/tmp/parallel_44616; parallel --pipepart -a /tmp/parallel_44616 -k --block 5 'echo foo; cat'; parallel --pipepart -a /tmp/parallel_44616 -k --block 2 --regexp --recend 3'\n' 'echo foo; cat'; rm /tmp/parallel_44616 seq 10 >/tmp/parallel_44616; parallel --pipepart -a /tmp/parallel_44616 -k --block 5 'echo foo; cat'; parallel --pipepart -a /tmp/parallel_44616 -k --block 2 --regexp --recend 3'\n' 'echo foo; cat'; rm /tmp/parallel_44616
@ -157,3 +157,7 @@ foo
8 8
9 9
10 10
echo '### TMUX not found'
### TMUX not found
TMUX=not-existing parallel --tmux echo ::: 1
parallel: Error: not-existing not found in $PATH.

12
testsuite/wanted-results/parallel-local-ssh2
View file

@ -45,7 +45,7 @@ Function non-shellshock-hardened
echo '### bug #42999: --pipepart with remote does not work' echo '### bug #42999: --pipepart with remote does not work'
### bug #42999: --pipepart with remote does not work ### bug #42999: --pipepart with remote does not work
seq 100 > /tmp/bug42999; chmod 600 /tmp/bug42999; parallel --sshdelay 0.3 --pipepart --block 31 -a /tmp/bug42999 -k -S parallel@lo wc | perl -pe s:/tmp/.........pip:/tmp/XXXX: ; parallel --sshdelay 0.2 --pipepart --block 31 -a /tmp/bug42999 -k --fifo -S parallel@lo wc | perl -pe s:/tmp/.........pip:/tmp/XXXX: ; parallel --sshdelay 0.1 --pipepart --block 31 -a /tmp/bug42999 -k --cat -S parallel@lo wc | perl -pe s:/tmp/.........pip:/tmp/XXXX: ; rm /tmp/bug42999 seq 100 > /tmp/bug42999; chmod 600 /tmp/bug42999; parallel --sshdelay 0.3 --pipepart --block 31 -a /tmp/bug42999 -k -S parallel@lo wc | perl -pe s:/tmp/.........pip:/tmp/XXXX: ; parallel --sshdelay 0.2 --pipepart --block 31 -a /tmp/bug42999 -k --fifo -S parallel@lo wc | perl -pe s:/tmp/.........pip:/tmp/XXXX: ; parallel --sshdelay 0.1 --pipepart --block 31 -a /tmp/bug42999 -k --cat -S parallel@lo wc | perl -pe s:/tmp/.........pip:/tmp/XXXX: ; rm /tmp/bug42999
13 14 32 14 14 33
11 11 33 11 11 33
11 11 33 11 11 33
11 11 33 11 11 33
@ -53,8 +53,8 @@ echo '### bug #42999: --pipepart with remote does not work'
11 11 33 11 11 33
11 11 33 11 11 33
11 11 33 11 11 33
10 9 29 9 9 28
13 14 32 /tmp/XXXX 14 14 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
@ -62,8 +62,8 @@ echo '### bug #42999: --pipepart with remote does not work'
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
10 9 29 /tmp/XXXX 9 9 28 /tmp/XXXX
13 14 32 /tmp/XXXX 14 14 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
@ -71,7 +71,7 @@ echo '### bug #42999: --pipepart with remote does not work'
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
10 9 29 /tmp/XXXX 9 9 28 /tmp/XXXX
echo '### --cat gives incorrect exit value in csh' echo '### --cat gives incorrect exit value in csh'
### --cat gives incorrect exit value in csh ### --cat gives incorrect exit value in csh
echo false | parallel --pipe --cat -Scsh@lo 'cat {}; false' ; echo $?; echo false | parallel --pipe --cat -Stcsh@lo 'cat {}; false' ; echo $?; echo true | parallel --pipe --cat -Scsh@lo 'cat {}; true' ; echo $?; echo true | parallel --pipe --cat -Stcsh@lo 'cat {}; true' ; echo $?; echo '### --cat and --fifo exit value in bash' echo false | parallel --pipe --cat -Scsh@lo 'cat {}; false' ; echo $?; echo false | parallel --pipe --cat -Stcsh@lo 'cat {}; false' ; echo $?; echo true | parallel --pipe --cat -Scsh@lo 'cat {}; true' ; echo $?; echo true | parallel --pipe --cat -Stcsh@lo 'cat {}; true' ; echo $?; echo '### --cat and --fifo exit value in bash'

18
testsuite/wanted-results/parallel-local22
View file

@ -44,7 +44,7 @@ echo '### bug #42041: Implement $PARALLEL_JOBSLOT'
echo '### bug #42363: --pipepart and --fifo/--cat does not work' echo '### bug #42363: --pipepart and --fifo/--cat does not work'
### bug #42363: --pipepart and --fifo/--cat does not work ### bug #42363: --pipepart and --fifo/--cat does not work
seq 100 > /tmp/bug42363; parallel --pipepart --block 31 -a /tmp/bug42363 -k --fifo wc | perl -pe s:/tmp/.........pip:/tmp/XXXX: ; parallel --pipepart --block 31 -a /tmp/bug42363 -k --cat wc | perl -pe s:/tmp/.........pip:/tmp/XXXX: ; rm /tmp/bug42363 seq 100 > /tmp/bug42363; parallel --pipepart --block 31 -a /tmp/bug42363 -k --fifo wc | perl -pe s:/tmp/.........pip:/tmp/XXXX: ; parallel --pipepart --block 31 -a /tmp/bug42363 -k --cat wc | perl -pe s:/tmp/.........pip:/tmp/XXXX: ; rm /tmp/bug42363
13 14 32 /tmp/XXXX 14 14 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
@ -52,8 +52,8 @@ echo '### bug #42363: --pipepart and --fifo/--cat does not work'
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
10 9 29 /tmp/XXXX 9 9 28 /tmp/XXXX
13 14 32 /tmp/XXXX 14 14 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
@ -61,7 +61,7 @@ echo '### bug #42363: --pipepart and --fifo/--cat does not work'
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
11 11 33 /tmp/XXXX 11 11 33 /tmp/XXXX
10 9 29 /tmp/XXXX 9 9 28 /tmp/XXXX
echo '### bug #42055: --pipepart -a bigfile should not require sequential reading of bigfile' echo '### bug #42055: --pipepart -a bigfile should not require sequential reading of bigfile'
### bug #42055: --pipepart -a bigfile should not require sequential reading of bigfile ### bug #42055: --pipepart -a bigfile should not require sequential reading of bigfile
parallel --pipepart -a /etc/passwd -L 1 should not be run parallel --pipepart -a /etc/passwd -L 1 should not be run
@ -73,11 +73,11 @@ parallel: Error: --pipepart is incompatible with --max-replace-args, --max-lines
echo '### bug #42893: --block should not cause decimals in cat_partial' echo '### bug #42893: --block should not cause decimals in cat_partial'
### bug #42893: --block should not cause decimals in cat_partial ### bug #42893: --block should not cause decimals in cat_partial
seq 100000 >/tmp/parallel-decimal; parallel --dry-run -kvv --pipepart --block 0.12345M -a /tmp/parallel-decimal true; rm /tmp/parallel-decimal seq 100000 >/tmp/parallel-decimal; parallel --dry-run -kvv --pipepart --block 0.12345M -a /tmp/parallel-decimal true; rm /tmp/parallel-decimal
</tmp/parallel-decimal perl -e 'while(@ARGV) { sysseek(STDIN,shift,0) || die; $left = shift; while($read = sysread(STDIN,$buf, ($left > 32768 ? 32768 : $left))){ $left -= $read; syswrite(STDOUT,$buf); } }' 0 0 0 129449 | (true) </tmp/parallel-decimal perl -e 'while(@ARGV) { sysseek(STDIN,shift,0) || die; $left = shift; while($read = sysread(STDIN,$buf, ($left > 32768 ? 32768 : $left))){ $left -= $read; syswrite(STDOUT,$buf); } }' 0 0 0 129450 | (true)
</tmp/parallel-decimal perl -e 'while(@ARGV) { sysseek(STDIN,shift,0) || die; $left = shift; while($read = sysread(STDIN,$buf, ($left > 32768 ? 32768 : $left))){ $left -= $read; syswrite(STDOUT,$buf); } }' 0 0 129449 129450 | (true) </tmp/parallel-decimal perl -e 'while(@ARGV) { sysseek(STDIN,shift,0) || die; $left = shift; while($read = sysread(STDIN,$buf, ($left > 32768 ? 32768 : $left))){ $left -= $read; syswrite(STDOUT,$buf); } }' 0 0 129450 129450 | (true)
</tmp/parallel-decimal perl -e 'while(@ARGV) { sysseek(STDIN,shift,0) || die; $left = shift; while($read = sysread(STDIN,$buf, ($left > 32768 ? 32768 : $left))){ $left -= $read; syswrite(STDOUT,$buf); } }' 0 0 258899 129450 | (true) </tmp/parallel-decimal perl -e 'while(@ARGV) { sysseek(STDIN,shift,0) || die; $left = shift; while($read = sysread(STDIN,$buf, ($left > 32768 ? 32768 : $left))){ $left -= $read; syswrite(STDOUT,$buf); } }' 0 0 258900 129450 | (true)
</tmp/parallel-decimal perl -e 'while(@ARGV) { sysseek(STDIN,shift,0) || die; $left = shift; while($read = sysread(STDIN,$buf, ($left > 32768 ? 32768 : $left))){ $left -= $read; syswrite(STDOUT,$buf); } }' 0 0 388349 129450 | (true) </tmp/parallel-decimal perl -e 'while(@ARGV) { sysseek(STDIN,shift,0) || die; $left = shift; while($read = sysread(STDIN,$buf, ($left > 32768 ? 32768 : $left))){ $left -= $read; syswrite(STDOUT,$buf); } }' 0 0 388350 129450 | (true)
</tmp/parallel-decimal perl -e 'while(@ARGV) { sysseek(STDIN,shift,0) || die; $left = shift; while($read = sysread(STDIN,$buf, ($left > 32768 ? 32768 : $left))){ $left -= $read; syswrite(STDOUT,$buf); } }' 0 0 517799 71096 | (true) </tmp/parallel-decimal perl -e 'while(@ARGV) { sysseek(STDIN,shift,0) || die; $left = shift; while($read = sysread(STDIN,$buf, ($left > 32768 ? 32768 : $left))){ $left -= $read; syswrite(STDOUT,$buf); } }' 0 0 517800 71095 | (true)
echo '### bug #42902: profiles containing arguments with space' echo '### bug #42902: profiles containing arguments with space'
### bug #42902: profiles containing arguments with space ### bug #42902: profiles containing arguments with space
echo "--rpl 'FULLPATH chomp(\$_=\"/bin/bash=\".\`readlink -f \$_\`);' " > ~/.parallel/FULLPATH; parallel -JFULLPATH echo FULLPATH ::: $0 echo "--rpl 'FULLPATH chomp(\$_=\"/bin/bash=\".\`readlink -f \$_\`);' " > ~/.parallel/FULLPATH; parallel -JFULLPATH echo FULLPATH ::: $0

2
testsuite/wanted-results/parallel-local9
View file

@ -3,7 +3,7 @@ bug #44250: pxz complains File format not recognized but decompresses anyway
# The first line dumps core if run from make file. Why?! # The first line dumps core if run from make file. Why?!
stdout parallel --compress --compress-program pxz ls /{} ::: OK-if-missing-file stdout parallel --compress --compress-program pxz ls /{} ::: OK-if-missing-file
Segmentation fault (core dumped) Segmentation fault (core dumped)
parallel: Error: pxz -dc failed parallel: Error: pxz -dc failed.
stdout parallel --compress --compress-program pixz --decompress-program 'pixz -d' ls /{} ::: OK-if-missing-file stdout parallel --compress --compress-program pixz --decompress-program 'pixz -d' ls /{} ::: OK-if-missing-file
ls: cannot access /OK-if-missing-file: No such file or directory ls: cannot access /OK-if-missing-file: No such file or directory
stdout parallel --compress --compress-program pixz --decompress-program 'pixz -d' true ::: OK-if-no-output stdout parallel --compress --compress-program pixz --decompress-program 'pixz -d' true ::: OK-if-no-output

48
testsuite/wanted-results/parallel-polarhome
View file

@ -5,107 +5,107 @@ minix.polarhome.com ### Run the test on minix.polarhome.com
copy_and_test freebsd.polarhome.com copy_and_test freebsd.polarhome.com
freebsd.polarhome.com ### Run the test on freebsd.polarhome.com freebsd.polarhome.com ### Run the test on freebsd.polarhome.com
freebsd.polarhome.com Works on freebsd.polarhome.com freebsd.polarhome.com Works on freebsd.polarhome.com
freebsd.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515. freebsd.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531.
copy_and_test solaris.polarhome.com copy_and_test solaris.polarhome.com
solaris.polarhome.com ### Run the test on solaris.polarhome.com solaris.polarhome.com ### Run the test on solaris.polarhome.com
solaris.polarhome.com Works on solaris.polarhome.com solaris.polarhome.com Works on solaris.polarhome.com
solaris.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable solaris.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
solaris.polarhome.com at bin/parallel line 3515 solaris.polarhome.com at bin/parallel line 3531
copy_and_test openbsd.polarhome.com copy_and_test openbsd.polarhome.com
openbsd.polarhome.com ### Run the test on openbsd.polarhome.com openbsd.polarhome.com ### Run the test on openbsd.polarhome.com
openbsd.polarhome.com Works on openbsd.polarhome.com openbsd.polarhome.com Works on openbsd.polarhome.com
openbsd.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 openbsd.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test netbsd.polarhome.com copy_and_test netbsd.polarhome.com
netbsd.polarhome.com ### Run the test on netbsd.polarhome.com netbsd.polarhome.com ### Run the test on netbsd.polarhome.com
netbsd.polarhome.com Works on netbsd.polarhome.com netbsd.polarhome.com Works on netbsd.polarhome.com
netbsd.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515. netbsd.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531.
copy_and_test debian.polarhome.com copy_and_test debian.polarhome.com
debian.polarhome.com ### Run the test on debian.polarhome.com debian.polarhome.com ### Run the test on debian.polarhome.com
debian.polarhome.com Works on debian.polarhome.com debian.polarhome.com Works on debian.polarhome.com
debian.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 debian.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test aix.polarhome.com copy_and_test aix.polarhome.com
aix.polarhome.com ### Run the test on aix.polarhome.com aix.polarhome.com ### Run the test on aix.polarhome.com
aix.polarhome.com Works on aix.polarhome.com aix.polarhome.com Works on aix.polarhome.com
aix.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: The file access permissions do not allow the specified action. at bin/parallel line 3515 aix.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: The file access permissions do not allow the specified action. at bin/parallel line 3531
copy_and_test redhat.polarhome.com copy_and_test redhat.polarhome.com
redhat.polarhome.com ### Run the test on redhat.polarhome.com redhat.polarhome.com ### Run the test on redhat.polarhome.com
redhat.polarhome.com Works on redhat.polarhome.com redhat.polarhome.com Works on redhat.polarhome.com
redhat.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 redhat.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test hpux.polarhome.com copy_and_test hpux.polarhome.com
hpux.polarhome.com ### Run the test on hpux.polarhome.com hpux.polarhome.com ### Run the test on hpux.polarhome.com
hpux.polarhome.com Works on hpux.polarhome.com hpux.polarhome.com Works on hpux.polarhome.com
hpux.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 hpux.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test qnx.polarhome.com copy_and_test qnx.polarhome.com
qnx.polarhome.com ### Run the test on qnx.polarhome.com qnx.polarhome.com ### Run the test on qnx.polarhome.com
qnx.polarhome.com parallel: Warning: Cannot figure out number of CPU cores. Using 1. qnx.polarhome.com parallel: Warning: Cannot figure out number of CPU cores. Using 1.
qnx.polarhome.com Works on qnx.polarhome.com qnx.polarhome.com Works on qnx.polarhome.com
qnx.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 qnx.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test tru64.polarhome.com copy_and_test tru64.polarhome.com
tru64.polarhome.com ### Run the test on tru64.polarhome.com tru64.polarhome.com ### Run the test on tru64.polarhome.com
tru64.polarhome.com Works on tru64.polarhome.com tru64.polarhome.com Works on tru64.polarhome.com
tru64.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable tru64.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
tru64.polarhome.com at bin/parallel line 3515 tru64.polarhome.com at bin/parallel line 3531
copy_and_test openindiana.polarhome.com copy_and_test openindiana.polarhome.com
openindiana.polarhome.com ### Run the test on openindiana.polarhome.com openindiana.polarhome.com ### Run the test on openindiana.polarhome.com
openindiana.polarhome.com parallel: Warning: Cannot figure out number of CPU cores. Using 1. openindiana.polarhome.com parallel: Warning: Cannot figure out number of CPU cores. Using 1.
openindiana.polarhome.com Works on openindiana.polarhome.com openindiana.polarhome.com Works on openindiana.polarhome.com
openindiana.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 openindiana.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test suse.polarhome.com copy_and_test suse.polarhome.com
suse.polarhome.com ### Run the test on suse.polarhome.com suse.polarhome.com ### Run the test on suse.polarhome.com
suse.polarhome.com Works on suse.polarhome.com suse.polarhome.com Works on suse.polarhome.com
suse.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515. suse.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531.
copy_and_test solaris-x86.polarhome.com copy_and_test solaris-x86.polarhome.com
solaris-x86.polarhome.com ### Run the test on solaris-x86.polarhome.com solaris-x86.polarhome.com ### Run the test on solaris-x86.polarhome.com
solaris-x86.polarhome.com Works on solaris-x86.polarhome.com solaris-x86.polarhome.com Works on solaris-x86.polarhome.com
solaris-x86.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 solaris-x86.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test mandriva.polarhome.com copy_and_test mandriva.polarhome.com
mandriva.polarhome.com ### Run the test on mandriva.polarhome.com mandriva.polarhome.com ### Run the test on mandriva.polarhome.com
mandriva.polarhome.com Works on mandriva.polarhome.com mandriva.polarhome.com Works on mandriva.polarhome.com
mandriva.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 mandriva.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test ubuntu.polarhome.com copy_and_test ubuntu.polarhome.com
ubuntu.polarhome.com ### Run the test on ubuntu.polarhome.com ubuntu.polarhome.com ### Run the test on ubuntu.polarhome.com
ubuntu.polarhome.com Works on ubuntu.polarhome.com ubuntu.polarhome.com Works on ubuntu.polarhome.com
ubuntu.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515. ubuntu.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531.
copy_and_test scosysv.polarhome.com copy_and_test scosysv.polarhome.com
scosysv.polarhome.com ### Run the test on scosysv.polarhome.com scosysv.polarhome.com ### Run the test on scosysv.polarhome.com
scosysv.polarhome.com Works on scosysv.polarhome.com scosysv.polarhome.com Works on scosysv.polarhome.com
scosysv.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable scosysv.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
scosysv.polarhome.com at bin/parallel line 3515 scosysv.polarhome.com at bin/parallel line 3531
copy_and_test unixware.polarhome.com copy_and_test unixware.polarhome.com
unixware.polarhome.com ### Run the test on unixware.polarhome.com unixware.polarhome.com ### Run the test on unixware.polarhome.com
unixware.polarhome.com Works on unixware.polarhome.com unixware.polarhome.com Works on unixware.polarhome.com
unixware.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 unixware.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test dragonfly.polarhome.com copy_and_test dragonfly.polarhome.com
dragonfly.polarhome.com ### Run the test on dragonfly.polarhome.com dragonfly.polarhome.com ### Run the test on dragonfly.polarhome.com
dragonfly.polarhome.com Works on dragonfly.polarhome.com dragonfly.polarhome.com Works on dragonfly.polarhome.com
dragonfly.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 dragonfly.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test centos.polarhome.com copy_and_test centos.polarhome.com
centos.polarhome.com ### Run the test on centos.polarhome.com centos.polarhome.com ### Run the test on centos.polarhome.com
centos.polarhome.com Works on centos.polarhome.com centos.polarhome.com Works on centos.polarhome.com
centos.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable centos.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
centos.polarhome.com at bin/parallel line 3515 centos.polarhome.com at bin/parallel line 3531
copy_and_test miros.polarhome.com copy_and_test miros.polarhome.com
miros.polarhome.com ### Run the test on miros.polarhome.com miros.polarhome.com ### Run the test on miros.polarhome.com
miros.polarhome.com Works on miros.polarhome.com miros.polarhome.com Works on miros.polarhome.com
miros.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable miros.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
miros.polarhome.com at bin/parallel line 3515 miros.polarhome.com at bin/parallel line 3531
copy_and_test hurd.polarhome.com copy_and_test hurd.polarhome.com
hurd.polarhome.com ### Run the test on hurd.polarhome.com hurd.polarhome.com ### Run the test on hurd.polarhome.com
hurd.polarhome.com Works on hurd.polarhome.com hurd.polarhome.com Works on hurd.polarhome.com
hurd.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515. hurd.polarhome.com Error in tempfile() using template /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531.
copy_and_test raspbian.polarhome.com copy_and_test raspbian.polarhome.com
raspbian.polarhome.com ### Run the test on raspbian.polarhome.com raspbian.polarhome.com ### Run the test on raspbian.polarhome.com
raspbian.polarhome.com Works on raspbian.polarhome.com raspbian.polarhome.com Works on raspbian.polarhome.com
raspbian.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 raspbian.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test macosx.polarhome.com copy_and_test macosx.polarhome.com
macosx.polarhome.com ### Run the test on macosx.polarhome.com macosx.polarhome.com ### Run the test on macosx.polarhome.com
macosx.polarhome.com Works on macosx.polarhome.com macosx.polarhome.com Works on macosx.polarhome.com
macosx.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3515 macosx.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Could not create temp file /XXXXXXXX.arg: Permission denied at bin/parallel line 3531
copy_and_test hpux-ia64.polarhome.com copy_and_test hpux-ia64.polarhome.com
hpux-ia64.polarhome.com ### Run the test on hpux-ia64.polarhome.com hpux-ia64.polarhome.com ### Run the test on hpux-ia64.polarhome.com
hpux-ia64.polarhome.com Works on hpux-ia64.polarhome.com hpux-ia64.polarhome.com Works on hpux-ia64.polarhome.com
hpux-ia64.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable hpux-ia64.polarhome.com Error in tempfile() using /XXXXXXXX.arg: Parent directory (/) is not writable
hpux-ia64.polarhome.com at bin/parallel line 3515 hpux-ia64.polarhome.com at bin/parallel line 3531
copy_and_test syllable.polarhome.com copy_and_test syllable.polarhome.com
syllable.polarhome.com ### Run the test on syllable.polarhome.com syllable.polarhome.com ### Run the test on syllable.polarhome.com
syllable.polarhome.com chmod: changing permissions of `bin/p.tmp': Function not implemented syllable.polarhome.com chmod: changing permissions of `bin/p.tmp': Function not implemented