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Passes testsuite.
parallel: base64 encoding compatible with rc.
This commit is contained in:
Ole Tange
parent
3738136bc4
commit
45dd9f29d9
58
src/parallel
58
src/parallel
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@ -1183,7 +1183,7 @@ sub check_invalid_option_combinations {
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sub init_globals {
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# Defaults:
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$Global::version = 20160323;
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$Global::version = 20160414;
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$Global::progname = 'parallel';
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$Global::infinity = 2**31;
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$Global::debug = 0;
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@ -3735,9 +3735,10 @@ sub __GENERIC_COMMON_FUNCTION__ {}
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sub mkdir_or_die {
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# If dir is not executable: die
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my $dir = shift;
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File::Path::mkpath($dir);
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# The eval is needed to catch exception from mkdir
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eval { File::Path::mkpath($dir); };
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if(not -x $dir) {
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::error("Cannot change into non-executable $dir: $!");
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::error("Cannot change into non-executable dir $dir: $!");
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::wait_and_exit(255);
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}
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}
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@ -6855,11 +6856,8 @@ sub wrapped {
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# $command = "perl -e '".base64_zip_eval()."' ".
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# join" ",string_zip_base64(
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# 'exec "'.::perl_quote_scalar($command).'"');
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$command = "perl -e ".
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::shell_quote_scalar(base64_eval())." ".
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join(" ", ::shell_quote(
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string_base64("exec \"$Global::shell\",'-c',\"".
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::perl_quote_scalar($command).'"')));
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$command = base64_wrap("exec \"$Global::shell\",'-c',\"".
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::perl_quote_scalar($command).'"');
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}
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$self->{'wrapped'} = $command;
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}
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@ -6958,6 +6956,21 @@ sub base64_zip_eval {
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return $script;
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}
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sub base64_wrap {
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# base64 encode Perl code
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# Split it into chunks of < 1000 bytes
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# Prepend it with a decoder that eval's it
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# Input:
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# $eval_string = Perl code to run
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# Returns:
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# $shell_command = shell command that runs $eval_string
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my $eval_string = shift;
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return
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"perl -e ".
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::shell_quote_scalar(base64_eval())." ".
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join" ",::shell_quote(string_base64($eval_string));
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}
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sub base64_eval {
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# Script that:
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# * reads base64 strings from @ARGV
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@ -7081,11 +7094,14 @@ sub sshlogin_wrap {
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my @non_functions = grep { substr($ENV{$_},0,4) ne "() {" } @vars;
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# eval of @envset will set %ENV
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my $envset = join"", map {
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'$ENV{"'.::perl_quote_scalar($_).'"}="'. ::perl_quote_scalar($ENV{$_}).'";'; } @non_functions;
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'$ENV{"'.::perl_quote_scalar($_).'"}="'.
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::perl_quote_scalar($ENV{$_}).'";'; } @non_functions;
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# running @bashfunc on the command line, will set the functions
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my @bashfunc = map {
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my $v=$_; s/BASH_FUNC_(.*)(\(\)|%%)/$1/; "$_$ENV{$v};export -f $_ >/dev/null;" } @bash_functions;
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my $v=$_;
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s/BASH_FUNC_(.*)(\(\)|%%)/$1/;
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"$_$ENV{$v};export -f $_ >/dev/null;" } @bash_functions;
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# eval $bashfuncset will set $bashfunc
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my $bashfuncset;
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if(@bashfunc) {
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@ -7135,25 +7151,19 @@ sub sshlogin_wrap {
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if(@opt::env) {
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# Prepend with environment setter, which sets functions in zsh
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my ($csh_friendly,$envset,$bashfuncset) = env_as_eval();
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my $env_command = $envset.$bashfuncset.
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my $perl_code = $envset.$bashfuncset.
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'@ARGV="'.::perl_quote_scalar($command).'";'.
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"exec\"$Global::shell\",\"-c\",\(\$bashfunc.\"\@ARGV\"\)\;die\"exec:\$\!\\n\"\;";
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if(length $env_command > 999
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if(length $perl_code > 999
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or
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not $csh_friendly
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or
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$command =~ /\n/) {
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# csh does not deal well with > 1000 chars in one word
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# csh does not deal well with $ENV with \n
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# bzip2 breaks --sql mysql://...
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# $env_command = "perl -e '".base64_zip_eval()."' ".
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# join" ",string_zip_base64($env_command);
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$env_command = "perl -e ".
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::shell_quote_scalar(base64_eval())." ".
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join" ",::shell_quote(string_base64($env_command));
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$self->{'sshlogin_wrap'} = $env_command;
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$self->{'sshlogin_wrap'} = base64_wrap($perl_code);
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} else {
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$self->{'sshlogin_wrap'} = "perl -e ".::shell_quote_scalar($env_command);
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$self->{'sshlogin_wrap'} = "perl -e ".::shell_quote_scalar($perl_code);
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}
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} else {
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$self->{'sshlogin_wrap'} = $command;
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@ -7181,9 +7191,10 @@ sub sshlogin_wrap {
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$command =~ /\n/) {
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# csh does not deal well with > 1000 chars in one word
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# csh does not deal well with $ENV with \n
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$quoted_remote_command = "perl -e ".
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$quoted_remote_command =
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"perl -e ".
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::shell_quote_scalar(::shell_quote_scalar(base64_eval()))." ".
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join" ",::shell_quote(string_base64($remote_command));
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join" ",::shell_quote(::shell_quote(string_base64($remote_command)));
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} else {
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$quoted_remote_command = $dq_remote_command;
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}
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@ -7668,6 +7679,7 @@ sub print_dryrun_and_verbose {
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# The line to run contains a 118 chars extra code + the title 2x
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my $l_tot = 2 * $l_tit + $l_act + $l_fifo;
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my $quoted_space75 = ::shell_quote_scalar(" ")x75;
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while($l_tit < 1000 and
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(
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(890 < $l_tot and $l_tot < 1350)
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@ -7681,7 +7693,7 @@ sub print_dryrun_and_verbose {
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# The measured lengths are:
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# 996 < (title + whole command) < 1127
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# 9331 < (title + whole command) < 9636
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$title = $title.('\ 'x75);
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$title .= $quoted_space75;
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$l_tit = length($title);
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$l_tot = 2 * $l_tit + $l_act + $l_fifo;
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}
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@ -671,7 +671,7 @@ special chars and ' is used for newline. Whether a char is special
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depends on the shell and the context. Luckily quoting a bit too many
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chars does not break things.
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It is fast, but had the distinct disadvantage that if a string needs
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It is fast, but has the distinct disadvantage that if a string needs
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to be quoted multiple times, the \'s double every time - increasing
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the string length exponentially.
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@ -748,11 +748,10 @@ are no visible files on it.
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GNU B<parallel> buffers on disk. If the disk is full data may be
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lost. To check if the disk is full GNU B<parallel> writes a 8193 byte
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file when a job finishes. If this file is written successfully, it is
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removed immediately. If it is not written successfully, the disk is
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full. The size 8193 was chosen because 8192 gave wrong result on some
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file systems, whereas 8193 did the correct thing on all tested
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filesystems.
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file every second. If this file is written successfully, it is removed
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immediately. If it is not written successfully, the disk is full. The
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size 8193 was chosen because 8192 gave wrong result on some file
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systems, whereas 8193 did the correct thing on all tested filesystems.
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=head2 Perl replacement strings, {= =}, and --rpl
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@ -899,12 +898,6 @@ Open3 is slow. Printing is slow. It would be good if they did not tie
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up ressources, but were run in separate threads.
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=head2 Transferring of variables and functions from zsh
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Transferring Bash functions to remote zsh works.
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Can parallel_bash_environment be used to import zsh functions?
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=head2 --rrs on remote using a perl wrapper
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... | perl -pe '$/=$recend$recstart;BEGIN{ if(substr($_) eq $recstart) substr($_)="" } eof and substr($_) eq $recend) substr($_)=""
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@ -31,44 +31,44 @@ echo '### --sqlandworker mysql'
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(sleep 2; parallel --sqlworker $MYSQLTBL sleep .3\;echo >$T1) &
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parallel --sqlandworker $MYSQLTBL sleep .3\;echo ::: {1..5} ::: {a..e} >$T2;
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true sort -u $T1 $T2;
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sql $MYSQL 'select * from parsql order by seq;'
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sleep 1; sql $MYSQL 'select * from parsql order by seq;'
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echo '### --sqlandworker postgresql'
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(sleep 2; parallel --sqlworker $PGTBL sleep .3\;echo >$T3) &
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parallel --sqlandworker $PGTBL sleep .3\;echo ::: {1..5} ::: {a..e} >$T4;
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true sort -u $T3 $T4;
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sql $PG 'select * from parsql order by seq;'
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sleep 1; sql $PG 'select * from parsql order by seq;'
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echo '### --sqlandworker sqlite'
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(sleep 2; parallel --sqlworker $SQLITETBL sleep .3\;echo >$T5) &
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parallel --sqlandworker $SQLITETBL sleep .3\;echo ::: {1..5} ::: {a..e} >$T6;
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true sort -u $T5 $T6;
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sql $SQLITE 'select * from parsql order by seq;'
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sleep 1; sql $SQLITE 'select * from parsql order by seq;'
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echo '### --sqlandworker postgresql -S lo'
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(sleep 2; parallel -S lo --sqlworker $PGTBL2 sleep .3\;echo >$T7) &
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parallel -S lo --sqlandworker $PGTBL2 sleep .3\;echo ::: {1..5} ::: {a..e} >$T8;
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true sort -u $T7 $T8;
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sql $PG 'select * from parsql2 order by seq;'
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sleep 1; sql $PG 'select * from parsql2 order by seq;'
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echo '### --sqlandworker postgresql --results'
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mkdir -p /tmp/out--sql
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(sleep 2; parallel --results /tmp/out--sql --sqlworker $PGTBL3 sleep .3\;echo >$T9) &
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parallel --results /tmp/out--sql --sqlandworker $PGTBL3 sleep .3\;echo ::: {1..5} ::: {a..e} >$T10;
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true sort -u $T9 $T10;
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sql $PG 'select * from parsql3 order by seq;'
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sleep 1; sql $PG 'select * from parsql3 order by seq;'
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echo '### --sqlandworker postgresql --linebuffer'
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(sleep 2; parallel --linebuffer --sqlworker $PGTBL4 sleep .3\;echo >$T11) &
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parallel --linebuffer --sqlandworker $PGTBL4 sleep .3\;echo ::: {1..5} ::: {a..e} >$T12;
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true sort -u $T11 $T12;
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sql $PG 'select * from parsql4 order by seq;'
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sleep 1; sql $PG 'select * from parsql4 order by seq;'
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echo '### --sqlandworker postgresql -u'
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(sleep 2; parallel -u --sqlworker $PGTBL5 sleep .3\;echo >$T13) &
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parallel -u --sqlandworker $PGTBL5 sleep .3\;echo ::: {1..5} ::: {a..e} >$T14;
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true sort -u $T13 $T14;
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sql $PG 'select * from parsql5 order by seq;'
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sleep 1; sql $PG 'select * from parsql5 order by seq;'
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EOF
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@ -47,7 +47,7 @@ perl -ne '$/="\n\n"; /^Output/../^[^O]\S/ and next; /^ / and print;' ../../src/
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# /usr/bin/time -f %e
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s/^(\d+)\.\d+$/$1/;
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# Base 64 string
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s:[+/a-z0-9=]{50,}:BASE64:ig;
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s:[\\+/a-z0-9=]{50,}:BASE64:ig;
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# --workdir ...
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s:parallel/tmp/aspire-\d+-1:TMPWORKDIR:g;
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# + cat ... | (Bash outputs these in random order)
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@ -466,7 +466,7 @@ echo '**'
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echo 'bug #45993: --wd ... should also work when run locally'
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bug #45993: --wd ... should also work when run locally
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parallel --wd /bi 'pwd; echo $OLDPWD; echo' ::: fail
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parallel: Error: Cannot write to /bi: No such file or directory
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parallel: Error: Cannot change into non-executable dir /bi: No such file or directory
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parallel --wd /bin 'pwd; echo $OLDPWD; echo' ::: OK
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/bin
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/home/tange/privat/parallel/testsuite
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@ -1,7 +1,7 @@
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echo '### --sqlandworker mysql'
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### --sqlandworker mysql
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(sleep 2; parallel --sqlworker $MYSQLTBL sleep .3\;echo >$T1) &
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parallel --sqlandworker $MYSQLTBL sleep .3\;echo ::: {1..5} ::: {a..e} >$T2; true sort -u $T1 $T2; sql $MYSQL 'select * from parsql order by seq;'
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parallel --sqlandworker $MYSQLTBL sleep .3\;echo ::: {1..5} ::: {a..e} >$T2; true sort -u $T1 $T2; sleep 1; sql $MYSQL 'select * from parsql order by seq;'
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Seq Host Starttime JobRuntime Send Receive Exitval _Signal Command V1 V2 Stdout Stderr
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1 :9999990 4 0 0 sleep .3;echo 1 a 1 a 1 a\n
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2 :9999990 4 0 0 sleep .3;echo 1 b 1 b 1 b\n
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@ -31,7 +31,7 @@ Seq Host Starttime JobRuntime Send Receive Exitval _Signal Command V1 V2 Stdout
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echo '### --sqlandworker postgresql'
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### --sqlandworker postgresql
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(sleep 2; parallel --sqlworker $PGTBL sleep .3\;echo >$T3) &
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parallel --sqlandworker $PGTBL sleep .3\;echo ::: {1..5} ::: {a..e} >$T4; true sort -u $T3 $T4; sql $PG 'select * from parsql order by seq;'
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parallel --sqlandworker $PGTBL sleep .3\;echo ::: {1..5} ::: {a..e} >$T4; true sort -u $T3 $T4; sleep 1; sql $PG 'select * from parsql order by seq;'
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seq | host | starttime | jobruntime | send | receive | exitval | _signal | command | v1 | v2 | stdout | stderr
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-----+------+----------------+------------+------+---------+---------+---------+-------------------+----+----+--------+--------
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1 | : |999|999| 0 | 4 | 0 | 0 | sleep .3;echo 1 a | 1 | a | 1 a +|
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@ -89,7 +89,7 @@ echo '### --sqlandworker postgresql'
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echo '### --sqlandworker sqlite'
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### --sqlandworker sqlite
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(sleep 2; parallel --sqlworker $SQLITETBL sleep .3\;echo >$T5) &
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parallel --sqlandworker $SQLITETBL sleep .3\;echo ::: {1..5} ::: {a..e} >$T6; true sort -u $T5 $T6; sql $SQLITE 'select * from parsql order by seq;'
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parallel --sqlandworker $SQLITETBL sleep .3\;echo ::: {1..5} ::: {a..e} >$T6; true sort -u $T5 $T6; sleep 1; sql $SQLITE 'select * from parsql order by seq;'
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Seq|Host|Starttime|JobRuntime|Send|Receive|Exitval|_Signal|Command|V1|V2|Stdout|Stderr
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1|:|999|999|0|4|0|0|sleep .3;echo 1 a|1|a|1 a
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@ -144,7 +144,7 @@ Seq|Host|Starttime|JobRuntime|Send|Receive|Exitval|_Signal|Command|V1|V2|Stdout|
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echo '### --sqlandworker postgresql -S lo'
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### --sqlandworker postgresql -S lo
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(sleep 2; parallel -S lo --sqlworker $PGTBL2 sleep .3\;echo >$T7) &
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parallel -S lo --sqlandworker $PGTBL2 sleep .3\;echo ::: {1..5} ::: {a..e} >$T8; true sort -u $T7 $T8; sql $PG 'select * from parsql2 order by seq;'
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parallel -S lo --sqlandworker $PGTBL2 sleep .3\;echo ::: {1..5} ::: {a..e} >$T8; true sort -u $T7 $T8; sleep 1; sql $PG 'select * from parsql2 order by seq;'
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seq | host | starttime | jobruntime | send | receive | exitval | _signal | command | v1 | v2 | stdout | stderr
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-----+------+----------------+------------+------+---------+---------+---------+-------------------+----+----+--------+--------
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1 | lo |999|999| 0 | 4 | 0 | 0 | sleep .3;echo 1 a | 1 | a | 1 a +|
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@ -203,7 +203,7 @@ echo '### --sqlandworker postgresql --results'
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### --sqlandworker postgresql --results
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mkdir -p /tmp/out--sql
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(sleep 2; parallel --results /tmp/out--sql --sqlworker $PGTBL3 sleep .3\;echo >$T9) &
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parallel --results /tmp/out--sql --sqlandworker $PGTBL3 sleep .3\;echo ::: {1..5} ::: {a..e} >$T999; true sort -u $T9 $T999; sql $PG 'select * from parsql3 order by seq;'
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parallel --results /tmp/out--sql --sqlandworker $PGTBL3 sleep .3\;echo ::: {1..5} ::: {a..e} >$T999; true sort -u $T9 $T999; sleep 1; sql $PG 'select * from parsql3 order by seq;'
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seq | host | starttime | jobruntime | send | receive | exitval | _signal | command | v1 | v2 | stdout | stderr
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-----+------+----------------+------------+------+---------+---------+---------+-------------------+----+----+------------------------------+------------------------------
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1 | : |999|999| 0 | 4 | 0 | 0 | sleep .3;echo 1 a | 1 | a | /tmp/out--sql/1/1/2/a/stdout | /tmp/out--sql/1/1/2/a/stderr
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@ -236,7 +236,7 @@ echo '### --sqlandworker postgresql --results'
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echo '### --sqlandworker postgresql --linebuffer'
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### --sqlandworker postgresql --linebuffer
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(sleep 2; parallel --linebuffer --sqlworker $PGTBL4 sleep .3\;echo >$T999) &
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parallel --linebuffer --sqlandworker $PGTBL4 sleep .3\;echo ::: {1..5} ::: {a..e} >$T999; true sort -u $T999$T999; sql $PG 'select * from parsql4 order by seq;'
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parallel --linebuffer --sqlandworker $PGTBL4 sleep .3\;echo ::: {1..5} ::: {a..e} >$T999; true sort -u $T999$T999; sleep 1; sql $PG 'select * from parsql4 order by seq;'
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seq | host | starttime | jobruntime | send | receive | exitval | _signal | command | v1 | v2 | stdout | stderr
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-----+------+----------------+------------+------+---------+---------+---------+-------------------+----+----+--------+--------
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1 | : |999|999| 0 | 4 | 0 | 0 | sleep .3;echo 1 a | 1 | a | |
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@ -269,7 +269,7 @@ echo '### --sqlandworker postgresql --linebuffer'
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echo '### --sqlandworker postgresql -u'
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### --sqlandworker postgresql -u
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(sleep 2; parallel -u --sqlworker $PGTBL5 sleep .3\;echo >$T999) &
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parallel -u --sqlandworker $PGTBL5 sleep .3\;echo ::: {1..5} ::: {a..e} >$T999; true sort -u $T999$T999; sql $PG 'select * from parsql5 order by seq;'
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parallel -u --sqlandworker $PGTBL5 sleep .3\;echo ::: {1..5} ::: {a..e} >$T999; true sort -u $T999$T999; sleep 1; sql $PG 'select * from parsql5 order by seq;'
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seq | host | starttime | jobruntime | send | receive | exitval | _signal | command | v1 | v2 | stdout | stderr
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-----+------+----------------+------------+------+---------+---------+---------+-------------------+----+----+--------+--------
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1 | : |999|999| 0 | 0 | 0 | 0 | sleep .3;echo 1 a | 1 | a | |
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@ -242,4 +242,4 @@ echo '### Test bug #35820: sem breaks if $HOME is not writable'
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echo 'Workaround: use another writable dir'; rm -rf /tmp/.parallel; HOME=/tmp sem echo OK; HOME=/tmp sem --wait; HOME=/usr/this/should/fail stdout sem echo should fail
|
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Workaround: use another writable dir
|
||||
OK
|
||||
parallel: Error: Cannot write to /usr/this/should/fail/.parallel: No such file or directory
|
||||
parallel: Error: Cannot change into non-executable dir /usr/this/should/fail/.parallel: No such file or directory
|
||||
|
|
|
|||
|
|
@ -861,7 +861,7 @@ _
|
|||
}
|
||||
export -f my_func3
|
||||
parallel -vv --workdir ... --nice 17 --env _ --trc {}.out -S $SERVER1 my_func3 {} ::: abc-file
|
||||
( ssh -l parallel lo -- mkdir -p ./.TMPWORKDIR;rsync --protocol 30 -rlDzR -essh\ -l\ parallel ./abc-file lo:./.TMPWORKDIR );ssh -l parallel lo -- exec perl -e @GNU_Parallel\\\=\\\(\\\"use\\\",\\\"IPC::Open3\\\;\\\",\\\"use\\\",\\\"MIME::Base64\\\"\\\)\\\;eval\\\"@GNU_Parallel\\\"\\\;my\\\$eval\\\=decode_base64\\\(join\\\"\\\",@ARGV\\\)\\\;eval\\\$eval\\\; BASE64 BASE64\=;_EXIT_status=$?; mkdir -p ./.; rsync --protocol 30 --rsync-path=cd\ ./.TMPWORKDIR/./.\;\ rsync -rlDzR -essh\ -l\ parallel lo:./abc-file.out ./.;ssh -l parallel lo -- \(rm\ -f\ ./.TMPWORKDIR/abc-file\;\ sh\ -c\ \'rmdir\ ./.TMPWORKDIR/\ ./.parallel/tmp/\ ./.parallel/\ 2\>/dev/null\'\;rm\ -rf\ ./.TMPWORKDIR\;\);ssh -l parallel lo -- \(rm\ -f\ ./.TMPWORKDIR/abc-file.out\;\ sh\ -c\ \'rmdir\ ./.TMPWORKDIR/\ ./.parallel/tmp/\ ./.parallel/\ 2\>/dev/null\'\;rm\ -rf\ ./.TMPWORKDIR\;\);ssh -l parallel lo -- rm -rf .TMPWORKDIR; exit $_EXIT_status;
|
||||
( ssh -l parallel lo -- mkdir -p ./.TMPWORKDIR;rsync --protocol 30 -rlDzR -essh\ -l\ parallel ./abc-file lo:./.TMPWORKDIR );ssh -l parallel lo -- exec perl -e @GNU_Parallel\\\=\\\(\\\"use\\\",\\\"IPC::Open3\\\;\\\",\\\"use\\\",\\\"MIME::Base64\\\"\\\)\\\;eval\\\"@GNU_Parallel\\\"\\\;my\\\$eval\\\=decode_base64\\\(join\\\"\\\",@ARGV\\\)\\\;eval\\\$eval\\\; BASE64 BASE64;_EXIT_status=$?; mkdir -p ./.; rsync --protocol 30 --rsync-path=cd\ ./.TMPWORKDIR/./.\;\ rsync -rlDzR -essh\ -l\ parallel lo:./abc-file.out ./.;ssh -l parallel lo -- \(rm\ -f\ ./.TMPWORKDIR/abc-file\;\ sh\ -c\ \'rmdir\ ./.TMPWORKDIR/\ ./.parallel/tmp/\ ./.parallel/\ 2\>/dev/null\'\;rm\ -rf\ ./.TMPWORKDIR\;\);ssh -l parallel lo -- \(rm\ -f\ ./.TMPWORKDIR/abc-file.out\;\ sh\ -c\ \'rmdir\ ./.TMPWORKDIR/\ ./.parallel/tmp/\ ./.parallel/\ 2\>/dev/null\'\;rm\ -rf\ ./.TMPWORKDIR\;\);ssh -l parallel lo -- rm -rf .TMPWORKDIR; exit $_EXIT_status;
|
||||
parallel --sqlandworker csv:////%2Ftmp%2Flog.csv seq ::: 10 ::: 12 13 14
|
||||
cat /tmp/log.csv
|
||||
10
|
||||
|
|
|
|||
Loading…
Reference in a new issue