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Passes testsuite.
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Ole Tange
parent
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47
NEWS
47
NEWS
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20150422
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New in this release:
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* Security fix. An attacker on the local system could make you overwrite one of your own files with a single byte. The problem exist when you use --compress or --tmux or --pipe or --cat or --fifo. The attacker must figure out the randomly chosen file name and create a symlink within a time window of 15 ms.
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* --shuf will generate all jobs, and shuffle them before running them. This is useful to get a quick preview of the results before running the full batch.
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* GNU Parallel now has a DOI: https://dx.doi.org/10.5281/zenodo.16303
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* GNU Parallel was cited in: Scaling Machine Learning for Target Prediction in Drug Discovery using Apache Spark https://cris.cumulus.vub.ac.be/portal/files/5147244/spark.pdf
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* GNU Parallel was cited in: Bayesian inference of protein structure from chemical shift data https://peerj.com/articles/861/
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* GNU Parallel was cited in: Toward Enhanced Metadata Quality of Large-Scale Digital Libraries: Estimating Volume Time Range https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
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* GNU Parallel was cited in: Contrasting regional architectures of schizophrenia and other complex diseases using fast variance components analysis http://biorxiv.org/content/biorxiv/early/2015/03/13/016527.full.pdf
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* GNU Parallel was cited in: Experimental study on the Wind Farm Substation Cable Installation Problem http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf
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* GNU Parallel was used in: landsat-gifworks https://github.com/KAPPS-/landsat-gifworks
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* GNU Parallel was used in: https://github.com/exascience/elprep
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* GNU Parallel was used in: http://search.cpan.org/~jillrowe/HPC-Runner-GnuParallel-0.01/
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* GNU Parallel was used in: http://search.cpan.org/~ajpage/Bio-Roary-2.0.7/lib/Bio/Roary/JobRunner/Parallel.pm
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* GNU Parallel was used in: Rapid haploid SNP calling https://github.com/tseemann/snippy
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* Pictures and Metadata http://www.ozzy.no/2015/02/05/pictures-and-metadata/
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* Task automation with bash and parallel https://biowize.wordpress.com/2015/03/23/task-automation-with-bash-and-parallel/
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* How To: Speed Up File Transfers in Linux using RSync with GNU Parallel http://www.yourownlinux.com/2015/04/speed-up-file-transfers-using-rsync-with-gnu-parallel.html
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* Mirroring a Git Repository https://avacariu.me/articles/mirroring-a-git-repository.html
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* Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/
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* GNU Parallel (Sebuah Uji Coba) http://kaka.prakasa.my.id/2014/09/04/gnu-parallel-sebuah-uji-coba/
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* 你见过的最牛逼的命令行程序是什么？ http://www.zhihu.com/question/29257300
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* Bug fixes and man page updates.
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20150322
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New in this release:
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20
configure
vendored
20
configure
vendored
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@ -1,6 +1,6 @@
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#! /bin/sh
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# Guess values for system-dependent variables and create Makefiles.
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# Generated by GNU Autoconf 2.69 for parallel 20150322.
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# Generated by GNU Autoconf 2.69 for parallel 20150422.
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#
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# Report bugs to <bug-parallel@gnu.org>.
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#
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@ -579,8 +579,8 @@ MAKEFLAGS=
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# Identity of this package.
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PACKAGE_NAME='parallel'
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PACKAGE_TARNAME='parallel'
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PACKAGE_VERSION='20150322'
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PACKAGE_STRING='parallel 20150322'
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PACKAGE_VERSION='20150422'
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PACKAGE_STRING='parallel 20150422'
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PACKAGE_BUGREPORT='bug-parallel@gnu.org'
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PACKAGE_URL=''
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# Omit some internal or obsolete options to make the list less imposing.
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# This message is too long to be a string in the A/UX 3.1 sh.
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cat <<_ACEOF
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\`configure' configures parallel 20150322 to adapt to many kinds of systems.
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\`configure' configures parallel 20150422 to adapt to many kinds of systems.
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Usage: $0 [OPTION]... [VAR=VALUE]...
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@ -1269,7 +1269,7 @@ fi
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if test -n "$ac_init_help"; then
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case $ac_init_help in
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short | recursive ) echo "Configuration of parallel 20150322:";;
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short | recursive ) echo "Configuration of parallel 20150422:";;
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esac
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cat <<\_ACEOF
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test -n "$ac_init_help" && exit $ac_status
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if $ac_init_version; then
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cat <<\_ACEOF
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parallel configure 20150322
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parallel configure 20150422
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generated by GNU Autoconf 2.69
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Copyright (C) 2012 Free Software Foundation, Inc.
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@ -1362,7 +1362,7 @@ cat >config.log <<_ACEOF
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This file contains any messages produced by compilers while
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running configure, to aid debugging if configure makes a mistake.
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It was created by parallel $as_me 20150322, which was
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It was created by parallel $as_me 20150422, which was
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generated by GNU Autoconf 2.69. Invocation command line was
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$ $0 $@
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@ -2225,7 +2225,7 @@ fi
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# Define the identity of the package.
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PACKAGE='parallel'
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VERSION='20150322'
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VERSION='20150422'
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cat >>confdefs.h <<_ACEOF
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# report actual input values of CONFIG_FILES etc. instead of their
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# values after options handling.
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ac_log="
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This file was extended by parallel $as_me 20150322, which was
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This file was extended by parallel $as_me 20150422, which was
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generated by GNU Autoconf 2.69. Invocation command line was
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CONFIG_FILES = $CONFIG_FILES
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@ -2929,7 +2929,7 @@ _ACEOF
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cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
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ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
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ac_cs_version="\\
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parallel config.status 20150322
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parallel config.status 20150422
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configured by $0, generated by GNU Autoconf 2.69,
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with options \\"\$ac_cs_config\\"
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Summary: Shell tool for executing jobs in parallel
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Name: parallel
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Version: 20150322
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Version: 20150422
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Release: 1
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License: GPL
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Group: Productivity/File utilities
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@ -3719,7 +3719,7 @@ sub reap_usleep {
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$SIG{CHLD} = sub { kill "ALRM", $$ };
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usleep($ms);
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# --compress needs $SIG{CHLD} undefined
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$SIG{CHLD} = undef;
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delete $SIG{CHLD};
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exit_if_disk_full();
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if($opt::linebuffer) {
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for my $job (values %Global::running) {
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#!/bin/bash
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make stopvm
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mkdir -p $TMPDIR
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# Jobs that eat more than 2 GB RAM
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cat <<'EOF' | sed -e 's/;$/; /;s/$SERVER1/'$SERVER1'/;s/$SERVER2/'$SERVER2'/' | stdout parallel -vj1 -k --joblog /tmp/jl-`basename $0` -L1
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echo '### Trouble reading a record > 2 GB for certain versions of Perl (substr($a,0,2G+1)="fails")'
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@ -931,7 +931,7 @@ This helps funding further development; and it won't cost you a cent.
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If you pay 10000 EUR you should feel free to use GNU Parallel without citing.
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parallel --version
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GNU parallel 20150419
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GNU parallel 20150422
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Copyright (C) 2007,2008,2009,2010,2011,2012,2013,2014,2015 Ole Tange
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and Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
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@ -943,7 +943,7 @@ Web site: http://www.gnu.org/software/parallel
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When using programs that use GNU Parallel to process data for publication
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please cite as described in 'parallel --bibtex'.
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parallel --minversion 20130722 && echo Your version is at least 20130722.
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20150419
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20150422
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Your version is at least 20130722.
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parallel --bibtex
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Academic tradition requires you to cite works you base your article on.
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