From 587c75fa3979cd36e8bfed511d064a73ea5622e0 Mon Sep 17 00:00:00 2001 From: Ole Tange Date: Mon, 5 Jun 2017 11:26:39 +0200 Subject: [PATCH] NEWS: Removed duplicate entries. --- NEWS | 165 ++-------------------------------------- doc/release_new_version | 69 +++++------------ src/niceload | 2 +- src/parallel | 2 +- src/parallel.pod | 32 ++++---- src/parset.pod | 2 +- src/sql | 2 +- 7 files changed, 47 insertions(+), 227 deletions(-) diff --git a/NEWS b/NEWS index 6be5a769..dcf52ea5 100644 --- a/NEWS +++ b/NEWS @@ -142,10 +142,6 @@ adaptive methods https://link.springer.com/article/10.1134/S0016793217010108 -* GNU Parallel was cited in: Proper experimental design requires - randomization/balancing of molecular ecology experiments - http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf - * GNU Parallel was cited in: Higher likelihood of multiple bit-flips due to neutron-induced strikes on logic gates https://arxiv.org/pdf/1612.08239.pdf @@ -162,11 +158,6 @@ Theory for Many External Particles https://arxiv.org/pdf/1611.08003.pdf -* GNU Parallel was cited in: Large-scale benchmarking reveals false - discoveries and count transformation sensitivity in 16S rRNA gene - amplicon data analysis methods used in microbiome studies - https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8 - * GNU Parallel was cited in: Operations Research Applications in Nuclear Energy https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y @@ -218,12 +209,6 @@ gout, and the apple genome https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3 -* GNU Parallel was cited in: Determination of crystal structures of - proteins of unknown identity using a marathon molecular replacement - procedure: structure of Stenotrophomonas maltophilia - phosphate-binding protein - https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein - * GNU Parallel was cited in: Reaction rates for reaction-diffusion kinetics on unstructured meshes http://aip.scitation.org/doi/10.1063/1.4975167 @@ -333,24 +318,12 @@ transcript-expression levels in public cancer compendia http://www.nature.com/articles/srep39259 -* GNU Parallel was cited in: Learning string distance with smoothing - for OCR spelling correction - http://paperity.org/p/78557440/learning-string-distance-with-smoothing-for-ocr-spelling-correction - -* GNU Parallel was cited in: Transient compute clustering with GNU - Parallel and sshfs - https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4 - * GNU Parallel was cited in: Determination of crystal structures of proteins of unknown identity using a marathon molecular replacement procedure: Structure of Stenotrophomonas maltophilia phosphate-binding protein https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein -* GNU Parallel was cited in: The Outer Solar System Origins Survey: - I. Design and First-Quarter Discoveries - https://arxiv.org/pdf/1511.02895v2.pdf - * GNU Parallel was cited in: Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies @@ -360,6 +333,9 @@ RGB-space Geometry https://cs.gmu.edu/~ygingold/singleimage/Decomposing%20Images%20into%20Layers%20via%20RGB-space%20Geometry%20(Tan%20et%20al%202016%20TOG)%20small.pdf +* Transient compute clustering with GNU Parallel and sshfs + https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4 + * 4 Ways to Batch Convert Your PNG to JPG and Vice-Versa http://www.tecmint.com/linux-image-conversion-tools/ @@ -434,9 +410,6 @@ approach: IRMA, the iterative refinement meta-assembler http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/ -* GNU Parallel is used in Gene Set Omic Analysis: - https://bitbucket.org/srp33/gsoa - * Using GNU Parallel and ImageMagick for Conversions https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/ @@ -528,10 +501,6 @@ correlation analysis of genomic data http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf -* GNU Parallel was cited in: Computational Design of DNA-Binding - Proteins - http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16 - * GNU Parallel was cited in: Math Indexer and Searcher under the Hood: Fine-tuning Query Expansion and Unification Strategies http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings12/pdf/ntcir/MathIR/05-NTCIR12-MathIR-RuzickaM.pdf @@ -630,7 +599,7 @@ http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7407131 * GNU Parallel was cited in: Oops, my tests broke the build: An - analysis of Travis CI buildswith GitHub + analysis of Travis CI builds with GitHub https://peerj.com/preprints/1984/ * GNU Parallel was cited in: Drosophila Muller F Elements Maintain a @@ -642,10 +611,6 @@ Environments http://biorxiv.org/content/biorxiv/early/2016/03/24/022707.full.pdf -* GNU Parallel was cited in: Functional enrichments of disease - variants across thousands of independent loci in eight diseases - http://biorxiv.org/content/early/2016/04/11/048066.abstract - * GNU Parallel was cited in: PleaseTM: Enabling Transaction Conflict Management in Requester-wins Hardware Transactional Memory http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7446072 @@ -669,10 +634,6 @@ https://dl.acm.org/citation.cfm?id=2884799 (It has the cutest thumbnail graphs I have ever seen scattered all over the text) -* GNU Parallel was cited in: StrAuto: Automation and Parallelization - of STRUCTURE Analysis - http://vchhatre.w3.uvm.edu/download/strauto/strauto_doc.pdf - * GNU Parallel was cited in: Data processing pipeline for serial femtosecond crystallography at SACLA http://journals.iucr.org/j/issues/2016/03/00/zw5001/index.html @@ -680,14 +641,6 @@ * GNU Parallel was cited in: Reconstruction of Fine-Scale Auroral Dynamics http://arxiv.org/pdf/1512.01460.pdf -* GNU Parallel was cited in: The Outer Solar System Origins Survey: - I. Design and First-Quarter Discoveries - http://arxiv.org/pdf/1511.02895.pdf - -* GNU Parallel was cited in: Multiscale Estimation of Binding Kinetics - Using Brownian Dynamics, Molecular Dynamics and Milestoning - http://journals.plos.org/ploscompbiol/article/asset?id=10.1371%2Fjournal.pcbi.1004381.PDF - * GNU Parallel was cited in: Genomic legacy of the African cheetah, Acinonyx jubatus https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676127/pdf/13059_2015_Article_837.pdf @@ -701,10 +654,6 @@ Genomics, Transcriptomics and Proteogenomics http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0147221.PDF -* GNU Parallel was cited in: Stride Search: a general algorithm for - storm detection in high-resolution climate data - http://www.geosci-model-dev-discuss.net/8/7727/2015/gmdd-8-7727-2015.pdf - * GNU Parallel was cited in: How attention influences perceptual decision making: Single-trial EEG correlates of drift-diffusion model parameters http://www.cidlab.com/prints/nunez2016attention.pdf @@ -740,10 +689,6 @@ Australian Aboriginal population for health-based research http://www.nature.com/articles/sdata201623 -* GNU Parallel was cited in: Computational Design of DNA-Binding - Proteins - http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16 - * GNU Parallel was cited in: Do aye-ayes echolocate? http://biorxiv.org/content/biorxiv/early/2016/04/11/048165.full.pdf @@ -792,18 +737,10 @@ * Better CPU detection on OpenIndiana. -* GNU Parallel was cited in: How Can We Measure the Similarity Between - Resumes of Selected Candidates for a Job? - https://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_resumes_of_selected_candidates_for_a_job - * GNU Parallel was cited in: Automatic Methods for Assisted Recruitment https://www.researchgate.net/publication/297738658_Automatic_Methods_for_Assisted_Recruitment -* GNU Parallel was cited in: Tools and techniques for computational - reproducibility - http://biorxiv.org/content/biorxiv/early/2016/03/17/022707.full.pdf - * GNU Parallel was cited in: Reinterpretation of ATLAS 8 TeV searches for Natural SUSY with a R-Sneutrino LSP http://arxiv.org/pdf/1603.06130.pdf @@ -815,9 +752,6 @@ * A basic demo of how GNU Parallel can speed up execution of commands https://www.youtube.com/watch?v=kl8LO2jcvMc -* Downloading a list of URLs - http://blog.gypsydave5.com/2016/02/04/xargs-and-curl/ - * qbatch uses GNU Parallel: https://pypi.python.org/pypi/qbatch/1.0rc2 * FaceCrop uses GNU Parallel: https://github.com/EderSantana/FaceCrop @@ -954,15 +888,6 @@ Environments http://research.gold.ac.uk/15078/1/COM_thesis_JonesD_2015.pdf -* GNU Parallel was cited in: Contrasting genetic architectures of - schizophrenia and other complex diseases using fast - variance-components analysis - http://www.nature.com/ng/journal/v47/n12/full/ng.3431.html - -* GNU Parallel was cited in: Efficient Retrieval of Key Material for - Inspecting Potentially Malicious Traffic in the Cloud - http://www.cs.bham.ac.uk/~bxb/Papres/2015.1.pdf - * GNU Parallel was cited in: Achieving Consistent Doppler Measurements from SDO/HMI Vector Field Inversions http://arxiv.org/pdf/1511.06500.pdf @@ -1054,9 +979,6 @@ * GNU Parallel is used in TraitAR: https://testpypi.python.org/pypi/traitar/0.1.4 -* GNU Parallel is used in youtube-dl-parallel: - https://github.com/dlh/youtube-dl-parallel - * A parallel and fast way to download multiple files http://onetipperday.blogspot.com/2015/10/a-parallel-and-fast-way-to-download.html @@ -1075,22 +997,13 @@ * GNU Parallel was cited in: BL1: 2D Potts Model with a Twist https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf -* GNU Parallel was cited in: DockBench: An Integrated Informatic - Platform Bridging the Gap between the Robust Validation of Docking - Protocols and Virtual Screening Simulations - http://www.mdpi.com/1420-3049/20/6/9977/pdf - * GNU Parallel was cited in: A Scalable Parallel Implementation of Evolutionary Algorithms for Multi-Objective Optimization on GPUs http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074 -* GNU Parallel was cited in: Tools and techniques for computational - reproducibility - http://biorxiv.org/content/biorxiv/early/2015/07/17/022707.full.pdf - * GNU Parallel was cited in: How Can We Measure the Similarity Between Résumés of Selected Candidates for a Job? - http://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_rsums_of_selected_candidates_for_a_job + https://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_rsums_of_selected_candidates_for_a_job * GNU Parallel was cited in: Interplay of cell dynamics and epithelial tension during morphogenesis of the Drosophila pupal wing @@ -1124,10 +1037,6 @@ * Version of GNU Parallel that uses PostgreSQL as backend https://github.com/stephen-fralich/parallel-sql/ -* A composite genome approach to identify phylogenetically informative - data from next-generation sequencing - http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf - * SpeedSeq: ultra-fast personal genome analysis and interpretation http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3505.html @@ -1181,10 +1090,6 @@ * GNU Parallel was cited in: A Fast Compiler for NetKAT http://arxiv.org/pdf/1506.06378.pdf -* GNU Parallel was cited in: Flexible Modeling of Epidemics with an - Empirical Bayes Framework - http://www.stat.cmu.edu/~ryantibs/papers/empbayes.pdf - * GNU Parallel was cited in: Decomposing Time-Lapse Paintings into Layers http://cs.gmu.edu/~ygingold/timemap/Decomposing%20Time-Lapse%20Paintings%20into%20Layers%20(Tan%20et%20al%202015%20SIGGRAPH)%20600dpi.pdf @@ -1238,11 +1143,6 @@ * Q(...) can be used in {= =} to shell quote a string. -* GNU Parallel was cited in: Contrasting regional architectures of - schizophrenia and other complex diseases using fast variance - components analysis - http://biorxiv.org/content/biorxiv/early/2015/06/05/016527.full.pdf - * GNU Parallel was cited in: DockBench: An Integrated Informatic Platform Bridging the Gap between the Robust Validation of Docking Protocols and Virtual Screening Simulations @@ -1264,10 +1164,6 @@ phylogenetically informative data from next-generation sequencing http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf -* GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D - scattering and resonance calculations - http://arxiv.org/pdf/1505.07691.pdf - * GNU Parallel is used in: taxator-tk http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/ @@ -1306,10 +1202,6 @@ Metagenomics and RNA-seq http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf -* GNU Parallel was cited in: Toward Enhanced Metadata Quality of - Large-Scale Digital Libraries: Estimating Volume Time Range - https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf - * GNU Parallel was cited in: Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation @@ -1319,11 +1211,6 @@ long and error-free DNA reads http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf -* GNU Parallel was cited in: Contrasting regional architectures of - schizophrenia and other complex diseases using fast variance - components analysis - http://biorxiv.org/content/biorxiv/early/2015/03/13/016527.full.pdf - * GNU Parallel was used (unfortunately with wrong citation) in: Comparing the CarbonTracker and TM5-4DVar data assimilation systems for CO2 surface flux inversions @@ -1351,9 +1238,6 @@ * Importing huge databases faster https://www.lullabot.com/blog/article/importing-huge-databases-faster -* Run multiple ssh commands in parallel with GNU Parallel - https://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html/comment-page-1 - * Parallel? Gnu parallel! https://debian.pro/1834 * Bug fixes and man page updates. @@ -1386,11 +1270,6 @@ New in this release: Large-Scale Digital Libraries: Estimating Volume Time Range https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf -* GNU Parallel was cited in: Contrasting regional architectures of - schizophrenia and other complex diseases using fast variance - components analysis - http://biorxiv.org/content/biorxiv/early/2015/03/13/016527.full.pdf - * GNU Parallel was cited in: Experimental study on the Wind Farm Substation Cable Installation Problem http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf @@ -1425,9 +1304,6 @@ New in this release: * Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/ -* GNU Parallel (Sebuah Uji Coba) - http://kaka.prakasa.my.id/2014/09/04/gnu-parallel-sebuah-uji-coba/ - * 你见过的最牛逼的命令行程序是什么？ http://www.zhihu.com/question/29257300 @@ -1549,10 +1425,6 @@ New in this release: Analysis of Big Data from Mars: A Noachis Terra Case Study http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25 -* GNU Parallel was cited in: Towards Recommender Engineering Tools and - Experiments for Identifying Recommender Differences - http://elehack.net/research/thesis/mde-thesis.pdf - * GNU Parallel was used (unfortunately with wrong citation) in: Performance and Scaling Comparison Study of RDBMS and NoSQL (MongoDB) @@ -1610,10 +1482,6 @@ New in this release: * A bug fix in replacement strings caused rewrite of the replacement function. This makes use of replacement strings alpha quality. -* GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for - the Histological Quantification of Whole Slide Images - http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289 - * GNU Parallel was cited in: Improving Energy and Performance with Spintronics Caches in Multicore Systems http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24 @@ -1638,9 +1506,6 @@ New in this release: * GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003 -* GNU Parallel was cited in: Web-scale content reuse detection - ftp://info.isi.edu/isi-pubs/tr-692.pdf - * GNU Parallel was cited in: Computação Verde na Camada de Aplicação https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf @@ -1734,7 +1599,7 @@ New in this release: * GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for the Histological Quantification of Whole Slide Images - http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289#close + http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289 * GNU Parallel was cited in: Exploring a multiprocessor design space to analyze the impact of using STT-RAM in the memory hierarchy @@ -1786,9 +1651,6 @@ New in this release: * Comparing Golang, Scala, Elixir and Ruby for ETL http://www.dimroc.com/2014/09/29/etl-language-showdown/ -* Parallelizing Batch Jobs for Fun and Profit - http://mikeseidle.com/tech/programming/2013/03/parallelizing-batch-jobs - * Assemble a list of which of these hosts are up or down http://opsfun.wordpress.com/2014/03/31/gnu-parallel/ @@ -2471,9 +2333,6 @@ New in this release: * Compression of files in parallel using GNU parallel http://codextechnicanum.blogspot.dk/2013/07/compression-of-files-in-parallel-using.html -* Using GNU Parallel to roll-your-own Map Reduce! - http://www.rankfocus.com/?p=1 - * Using GNU Parallel with Amazon media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf @@ -2868,12 +2727,6 @@ New in this release: * Blog post: Running commands in parallel using bash. http://blog.michaelboman.org/2012/04/running-commands-in-parallel-using-bash.html -* Blog post: Efficient log processing. - http://www.francoismaillet.com/blog/?p=399 - -* Blog post about GNU Parallel and Amazon EC2. - http://blog.kevinformatics.com/post/4970574713/interested-in-your-experience-using-gnu-parallel-in - * Blog post in Hungarian. http://commandline.blog.hu/2012/05/03/gnu_parallel @@ -3050,9 +2903,6 @@ New in this release: * Blog post on using GNU Parallel of Mac OS X. http://www.0xcb0.com/2011/10/19/running-parallel-bash-tasks-on-os-x/ -* Blog post in English about using zip with GNU Parallel. - http://nuclear-imaging.info/site_content/2011/05/11/gnu-parallel/ - * Blog post in English by researcher. http://zandyware.wordpress.com/2011/10/15/gnu-parallell-make-best-use-of-your-multicore-computer/ @@ -3352,9 +3202,6 @@ New in this release: * Using GNU Parallel instead of xargs. Thanks to James Cuff. http://blog.jcuff.net/2011/02/on-train-ride-in.html -* Using GNU Parallel from 0install (German). Thanks to AdaMin. - http://forum.ubuntuusers.de/topic/gnu-parallel-mit-zero-install-kurzinfo-kein-wi/ - * Bug fixes and man page updates. diff --git a/doc/release_new_version b/doc/release_new_version index 97ec9d8c..81e81467 100644 --- a/doc/release_new_version +++ b/doc/release_new_version @@ -174,8 +174,8 @@ http://freshmeat.net/projects/parallel/releases/new https://joindiaspora.com/stream -New release of #GNU Parallel pi․dk/0 New in this release pi․dk/2 See the intro videos pi․dk/1 -10 secs installation: wget -O - pi․dk/3|bash +New release of #GNU Parallel pi.dk/0 New in this release pi.dk/2 See the intro videos pi.dk/1 +10 secs installation: wget -O - pi.dk/3|bash [x] Twitter Aspect: Public @@ -196,82 +196,55 @@ file:///home/tange/privat/parallel/doc/release_new_version from:tange@gnu.org to:parallel@gnu.org, bug-parallel@gnu.org -Subject: GNU Parallel 20170522 ('Macron') released [stable] +Subject: GNU Parallel 20170622 ('Manchester') released <<[stable]>> -GNU Parallel 20170522 ('Macron') [stable] has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/ +GNU Parallel 20170622 ('Manchester') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/ -Very little new functionality was introduced so this is a good candidate for a stable release.>> +<> Haiku of the month: - Always test your script - using a --dry-run - or --dr - -- Ole Tange + <<>> + -- Ole Tange New in this release: -* --timeout can now use s=second,m=minute,h=hour,d=day. +* Vote for GNU Parallel's community ads on + http://meta.unix.stackexchange.com/a/4356/2972 + http://meta.askubuntu.com/a/16750/22307 + http://meta.serverfault.com/a/9040/45704 -* --dr is now an alias for --dry-run. +* Graph for overhead for 1000 jobs has been updated. It remains steadily at 3.5 ms per job on a 1.7 GHz machine https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf -* Vote for GNU Parallel's community ads on http://meta.unix.stackexchange.com/a/4356/2972 http://meta.askubuntu.com/a/16750/22307 http://meta.serverfault.com/a/9040/45704 +* GNU Parallel was cited in: The topology of the directed clique complex as a network invariant https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y -* GNU Parallel was cited in: Feature Detection in Visual Cortex during Different Functional States https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/ +* GNU Parallel was cited in: -* GNU Parallel was cited in: From genotype to phenotype: inferring relationships between microbial traits and genomic components https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf +https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel -* GNU Parallel was cited in: Designing fecal microbiota transplant trials that account for differences in donor stool efficacy http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf +<> -* GNU Parallel was cited in: Assessing the predictability of anharmonic vibrational modes at the example of hydroxyl groups - ad hoc construction of localised modes and the influence of structural solute–solvent motifs http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract +<> -* GNU Parallel was cited in: Mapping Environmental Influences on Utility Fire Threat ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf - -* GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose Glass Transition in One Dimension https://arxiv.org/pdf/1704.02257.pdf - -* GNU Parallel was cited in: Online Automatic Post-editing for MT in a Multi-Domain Translation Environment https://www.aclweb.org/anthology/E/E17/E17-1050.pdf - -* GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS moderate-resolution reflective solar bands against MODIS Aqua over dark water scenes http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf - -* GNU Parallel was cited in: Scattering Networks: Efficient 2D Implementation And Application To Melanoma Classification http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf - -* GNU Parallel was cited in: Genome-scale detection of positive selection in 9 primates predicts human-virus evolutionary conflicts http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf - -* GNU Parallel is used in: Creates a speech dataset for deep learning https://github.com/jupiter126/Create_Speech_Dataset - -* GNU Parallel is used in: Parse and process the demixing secrets dataset (DSD100) https://github.com/faroit/dsdtools - -* First glance at the gnu parallel utility https://ibiscybernetics.com/blog/2017-04-05.html - -* Installing parallel from source https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/ - -* How to run command or code in parallel in bash shell under Linux or Unix https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/ - -* Parallel Serial Jobs Using GNU Parallel http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf - -* GNU Parallel or How to list millions of S3 objects https://joeray.me/gnu-parallel-how-to-list-millions-objects.html - -* Which Is the Best Tool for Copying a Large Directory Tree Locally? http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/ - -<> +<> <> <> -<> - <> <> +<> + <> <> <> -<< kontakt GNU Parallel was used (unfortunately without citation) in: Instrumentation and Trace Analysis for Ad-hoc Python Workflows in Cloud Environments http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7214035>> +<> <> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345 diff --git a/src/niceload b/src/niceload index 79059222..79e1bbd2 100755 --- a/src/niceload +++ b/src/niceload @@ -24,7 +24,7 @@ use strict; use Getopt::Long; $Global::progname="niceload"; -$Global::version = 20170522; +$Global::version = 20170523; Getopt::Long::Configure("bundling","require_order"); get_options_from_array(\@ARGV) || die_usage(); if($opt::version) { diff --git a/src/parallel b/src/parallel index 2fcb06f0..9d4bfc5f 100755 --- a/src/parallel +++ b/src/parallel @@ -1376,7 +1376,7 @@ sub check_invalid_option_combinations { sub init_globals { # Defaults: - $Global::version = 20170522; + $Global::version = 20170523; $Global::progname = 'parallel'; $Global::infinity = 2**31; $Global::debug = 0; diff --git a/src/parallel.pod b/src/parallel.pod index 9a73c080..8ce48b8c 100644 --- a/src/parallel.pod +++ b/src/parallel.pod @@ -341,7 +341,7 @@ B<:::> and B<::::> can be mixed. So these are equivalent: ::: 1 2 3 -=item B<:::+> I (alpha testing) +=item B<:::+> I (beta testing) Like B<:::> but linked like B<--link> to the previous input source. @@ -362,7 +362,7 @@ B<:::> and B<::::> can be mixed. See B<-a>, B<:::> and B<--link>. -=item B<::::+> I (alpha testing) +=item B<::::+> I (beta testing) Like B<::::> but linked like B<--link> to the previous input source. @@ -418,7 +418,7 @@ string that is not in the command line. See also: B<:::>. -=item B<--bar> (alpha testing) +=item B<--bar> (beta testing) Show progress as a progress bar. In the bar is shown: % of jobs completed, estimated seconds left, and number of jobs started. @@ -656,7 +656,7 @@ variables, arrays, and functions) use B. See also: B<--record-env>. -=item B<--eta> (alpha testing) +=item B<--eta> (beta testing) Show the estimated number of seconds before finishing. This forces GNU B to read all jobs before starting to find the number of @@ -744,9 +744,9 @@ See also: B<--line-buffer> B<--ungroup> Print a summary of the options to GNU B and exit. -=item B<--halt-on-error> I (alpha testing) +=item B<--halt-on-error> I (beta testing) -=item B<--halt> I (alpha testing) +=item B<--halt> I (beta testing) When should GNU B terminate? In some situations it makes no sense to run all jobs. GNU B should simply give up as soon @@ -891,7 +891,7 @@ specified, and for B<-I {}> otherwise. This option is deprecated; use B<-I> instead. -=item B<--joblog> I (alpha testing) +=item B<--joblog> I (beta testing) Logfile for executed jobs. Save a list of the executed jobs to I in the following TAB separated format: sequence number, @@ -1076,7 +1076,7 @@ Arguments will be recycled if one input source has more arguments than the other See also B<--header>, B<:::+>, B<::::+>. -=item B<--load> I (alpha testing) +=item B<--load> I (beta testing) Do not start new jobs on a given computer unless the number of running processes on the computer is less than I. I uses @@ -1254,7 +1254,7 @@ control on the command line (used by GNU B internally when called with B<--sshlogin>). -=item B<--plus> (beta testing) +=item B<--plus> Activate additional replacement strings: {+/} {+.} {+..} {+...} {..} {...} {/..} {/...} {##}. The idea being that '{+foo}' matches the opposite of @@ -1767,7 +1767,7 @@ impossible to track which input block corresponds to which output. B<--round-robin> implies B<--pipe>, except if B<--pipepart> is given. -=item B<--rpl> 'I I' (alpha testing) +=item B<--rpl> 'I I' (beta testing) Use I as a replacement string for I. This makes it possible to define your own replacement strings. GNU B's @@ -2236,7 +2236,7 @@ B<{}>. B<--tagstring> is ignored when using B<-u>, B<--onall>, and B<--nonall>. -=item B<--tee> (beta testing) +=item B<--tee> Pipe all data to all jobs. Used with B<--pipe>/B<--pipepart> and B<:::>. @@ -2277,13 +2277,13 @@ different dir for the files. Setting B<--tmpdir> is equivalent to setting $TMPDIR. -=item B<--tmux> (alpha testing) +=item B<--tmux> (beta testing) Use B for output. Start a B session and run each job in a window in that session. No other output will be produced. -=item B<--tmuxpane> (alpha testing) +=item B<--tmuxpane> (beta testing) Use B for output but put output into panes in the first window. Useful if you want to monitor the progress of less than 100 concurrent @@ -2771,16 +2771,16 @@ foo) you can do: If you want to remove a different ending, you can use {%string}: - parallel --plus echo {%_beta} ::: mycode_beta keep_beta_here + parallel --plus echo {%_demo} ::: mycode_demo keep_demo_here You can also remove a starting string with {#string} - parallel --plus echo {#beta_} ::: beta_mycode keep_beta_here + parallel --plus echo {#demo_} ::: demo_mycode keep_demo_here To remove a string anywhere you can use regular expressions with {/regexp/replacement} and leave the replacement empty: - parallel --plus echo {/beta_/} ::: beta_mycode remove_beta_here + parallel --plus echo {/demo_/} ::: demo_mycode remove_demo_here =head1 EXAMPLE: Download 24 images for each of the past 30 days diff --git a/src/parset.pod b/src/parset.pod index cabb8ffb..aea353c4 100644 --- a/src/parset.pod +++ b/src/parset.pod @@ -25,7 +25,7 @@ the destination variable and made to an array. If I contains multiple names separated by ',' or space, the names will be the destination variables. -B is not production ready and alpha quality. +B is not production ready and is beta quality. =head1 OPTIONS diff --git a/src/sql b/src/sql index 34fb769e..5e469c6a 100755 --- a/src/sql +++ b/src/sql @@ -576,7 +576,7 @@ $Global::Initfile && unlink $Global::Initfile; exit ($err); sub parse_options { - $Global::version = 20170522; + $Global::version = 20170523; $Global::progname = 'sql'; # This must be done first as this may exec myself