diff --git a/NEWS b/NEWS index 341e7c9f..b20315fc 100644 --- a/NEWS +++ b/NEWS @@ -1,3 +1,35 @@ +20150922 + +* GNU Parallel was cited in: Flexible Modeling of Epidemics with an Empirical Bayes Framework http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1004382 + +* GNU Parallel was cited in: BL1: 2D Potts Model with a Twist https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf + +* GNU Parallel was cited in: DockBench: An Integrated Informatic Platform Bridging the Gap between the Robust Validation of Docking Protocols and Virtual Screening Simulations http://www.mdpi.com/1420-3049/20/6/9977/pdf + +* GNU Parallel was cited in: A Scalable Parallel Implementation of Evolutionary Algorithms for +Multi-Objective Optimization on GPUs http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074 + +* GNU Parallel was cited in: Tools and techniques for computational reproducibility http://biorxiv.org/content/biorxiv/early/2015/07/17/022707.full.pdf + +* GNU Parallel was cited in: How Can We Measure the Similarity Between Résumés of Selected Candidates for a Job? http://crawl.prod.proquest.com.s3.amazonaws.com/fpcache/c79b355e6e441a51de3c7fcd52866184.pdf?AWSAccessKeyId=AKIAJF7V7KNV2KKY2NUQ&Expires=1442658364&Signature=soRDi6Xqw1zHhSmBrqJ5KiD%2B8Sw%3D + +* GNU Parallel was cited in: Interplay of cell dynamics and epithelial tension during morphogenesis of the Drosophila pupal wing http://www.researchgate.net/profile/Raphael_Etournay/publication/279061859_Interplay_of_cell_dynamics_and_epithelial_tension_during_morphogenesis_of_the_Drosophila_pupal_wing/links/558a95ad08aeae8413bcceea.pdf + +* Third-party selling GNU Parallel T-shirts http://www.aliexpress.com/item/2015F-BSO-GNU-LOGO-GNU-PARALLEL-men-s-shirt-sleeve-visual-illusion-error/32464827966.html + +* Joys of gnu parallel http://scottolesen.com/index.php/2015/08/26/joys-of-gnu-parallel/ + +* Crop and resize images with bash and ImageMagick https://www.simonholywell.com/post/2015/08/image-resize-crop-bash-imagemagick/ + +* Three Ways to Script Processes in Parallel http://www.codeword.xyz/2015/09/02/three-ways-to-script-processes-in-parallel/ + +* What It Looks Like to Process 3.5 Million Books http://blog.gdeltproject.org/what-it-looks-like-to-process-3-5-million-books/ + +* L’Exploration De Données Twitter http://blog.inovia-conseil.fr/?p=233 + +* Bug fixes and man page updates. + + 20150822 * If $job->skip() is called in {= =} the job will not be run. diff --git a/README b/README index 4c7449fc..8e45e12d 100644 --- a/README +++ b/README @@ -40,9 +40,9 @@ document. Full installation of GNU Parallel is as simple as: - wget http://ftpmirror.gnu.org/parallel/parallel-20150822.tar.bz2 - bzip2 -dc parallel-20150822.tar.bz2 | tar xvf - - cd parallel-20150822 + wget http://ftpmirror.gnu.org/parallel/parallel-20150922.tar.bz2 + bzip2 -dc parallel-20150922.tar.bz2 | tar xvf - + cd parallel-20150922 ./configure && make && sudo make install @@ -51,9 +51,9 @@ Full installation of GNU Parallel is as simple as: If you are not root you can add ~/bin to your path and install in ~/bin and ~/share: - wget http://ftpmirror.gnu.org/parallel/parallel-20150822.tar.bz2 - bzip2 -dc parallel-20150822.tar.bz2 | tar xvf - - cd parallel-20150822 + wget http://ftpmirror.gnu.org/parallel/parallel-20150922.tar.bz2 + bzip2 -dc parallel-20150922.tar.bz2 | tar xvf - + cd parallel-20150922 ./configure --prefix=$HOME && make && make install Or if your system lacks 'make' you can simply copy src/parallel diff --git a/configure b/configure index 943a2ba0..ce103e00 100755 --- a/configure +++ b/configure @@ -1,6 +1,6 @@ #! /bin/sh # Guess values for system-dependent variables and create Makefiles. -# Generated by GNU Autoconf 2.69 for parallel 20150822. +# Generated by GNU Autoconf 2.69 for parallel 20150922. # # Report bugs to . # @@ -579,8 +579,8 @@ MAKEFLAGS= # Identity of this package. PACKAGE_NAME='parallel' PACKAGE_TARNAME='parallel' -PACKAGE_VERSION='20150822' -PACKAGE_STRING='parallel 20150822' +PACKAGE_VERSION='20150922' +PACKAGE_STRING='parallel 20150922' PACKAGE_BUGREPORT='bug-parallel@gnu.org' PACKAGE_URL='' @@ -1203,7 +1203,7 @@ if test "$ac_init_help" = "long"; then # Omit some internal or obsolete options to make the list less imposing. # This message is too long to be a string in the A/UX 3.1 sh. cat <<_ACEOF -\`configure' configures parallel 20150822 to adapt to many kinds of systems. +\`configure' configures parallel 20150922 to adapt to many kinds of systems. Usage: $0 [OPTION]... [VAR=VALUE]... @@ -1269,7 +1269,7 @@ fi if test -n "$ac_init_help"; then case $ac_init_help in - short | recursive ) echo "Configuration of parallel 20150822:";; + short | recursive ) echo "Configuration of parallel 20150922:";; esac cat <<\_ACEOF @@ -1345,7 +1345,7 @@ fi test -n "$ac_init_help" && exit $ac_status if $ac_init_version; then cat <<\_ACEOF -parallel configure 20150822 +parallel configure 20150922 generated by GNU Autoconf 2.69 Copyright (C) 2012 Free Software Foundation, Inc. @@ -1362,7 +1362,7 @@ cat >config.log <<_ACEOF This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. -It was created by parallel $as_me 20150822, which was +It was created by parallel $as_me 20150922, which was generated by GNU Autoconf 2.69. Invocation command line was $ $0 $@ @@ -2225,7 +2225,7 @@ fi # Define the identity of the package. PACKAGE='parallel' - VERSION='20150822' + VERSION='20150922' cat >>confdefs.h <<_ACEOF @@ -2867,7 +2867,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 # report actual input values of CONFIG_FILES etc. instead of their # values after options handling. ac_log=" -This file was extended by parallel $as_me 20150822, which was +This file was extended by parallel $as_me 20150922, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = $CONFIG_FILES @@ -2929,7 +2929,7 @@ _ACEOF cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_version="\\ -parallel config.status 20150822 +parallel config.status 20150922 configured by $0, generated by GNU Autoconf 2.69, with options \\"\$ac_cs_config\\" diff --git a/configure.ac b/configure.ac index 42b666a1..193f4764 100644 --- a/configure.ac +++ b/configure.ac @@ -1,4 +1,4 @@ -AC_INIT([parallel], [20150822], [bug-parallel@gnu.org]) +AC_INIT([parallel], [20150922], [bug-parallel@gnu.org]) AM_INIT_AUTOMAKE([-Wall -Werror foreign]) AC_CONFIG_HEADERS([config.h]) AC_CONFIG_FILES([ diff --git a/doc/release_new_version b/doc/release_new_version index a07582b5..0842d6a6 100644 --- a/doc/release_new_version +++ b/doc/release_new_version @@ -229,6 +229,17 @@ New in this release: * GNU Parallel was cited in: BL1: 2D Potts Model with a Twist https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf +* GNU Parallel was cited in: DockBench: An Integrated Informatic Platform Bridging the Gap between the Robust Validation of Docking Protocols and Virtual Screening Simulations http://www.mdpi.com/1420-3049/20/6/9977/pdf + +* GNU Parallel was cited in: A Scalable Parallel Implementation of Evolutionary Algorithms for +Multi-Objective Optimization on GPUs http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074 + +* GNU Parallel was cited in: Tools and techniques for computational reproducibility http://biorxiv.org/content/biorxiv/early/2015/07/17/022707.full.pdf + +* GNU Parallel was cited in: How Can We Measure the Similarity Between Résumés of Selected Candidates for a Job? http://crawl.prod.proquest.com.s3.amazonaws.com/fpcache/c79b355e6e441a51de3c7fcd52866184.pdf?AWSAccessKeyId=AKIAJF7V7KNV2KKY2NUQ&Expires=1442658364&Signature=soRDi6Xqw1zHhSmBrqJ5KiD%2B8Sw%3D + +* GNU Parallel was cited in: Interplay of cell dynamics and epithelial tension during morphogenesis of the Drosophila pupal wing http://www.researchgate.net/profile/Raphael_Etournay/publication/279061859_Interplay_of_cell_dynamics_and_epithelial_tension_during_morphogenesis_of_the_Drosophila_pupal_wing/links/558a95ad08aeae8413bcceea.pdf + * << kontakt GNU Parallel was used (unfortunately without citation) in: Instrumentation and Trace Analysis for Ad-hoc Python Workflows in Cloud Environments http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7214035>> * <> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345 diff --git a/packager/obs/home:tange/parallel/parallel.spec b/packager/obs/home:tange/parallel/parallel.spec index 6f2a2c08..b49eb1dc 100644 --- a/packager/obs/home:tange/parallel/parallel.spec +++ b/packager/obs/home:tange/parallel/parallel.spec @@ -1,6 +1,6 @@ Summary: Shell tool for executing jobs in parallel Name: parallel -Version: 20150822 +Version: 20150922 Release: 1 License: GPL Group: Productivity/File utilities diff --git a/src/niceload b/src/niceload index 080bedfc..b786ab89 100755 --- a/src/niceload +++ b/src/niceload @@ -24,7 +24,7 @@ use strict; use Getopt::Long; $Global::progname="niceload"; -$Global::version = 20150822; +$Global::version = 20150922; Getopt::Long::Configure("bundling","require_order"); get_options_from_array(\@ARGV) || die_usage(); if($opt::version) { diff --git a/src/parallel b/src/parallel index 07095fd9..8f187752 100755 --- a/src/parallel +++ b/src/parallel @@ -1097,7 +1097,7 @@ sub parse_options { sub init_globals { # Defaults: - $Global::version = 20150909; + $Global::version = 20150922; $Global::progname = 'parallel'; $Global::infinity = 2**31; $Global::debug = 0; @@ -6006,10 +6006,10 @@ sub empty_input_wrapper { # Returns: # $wrapped_command = the wrapped command my $command = shift; - my $script = '$c="'.::perl_quote_scalar($Global::shell." -c ".::shell_quote_scalar($command)).'";'. + my $script = ::spacefree(0,q{ if(sysread(STDIN, $buf, 1)) { - open($fh, "|-", $c) || die; + open($fh, "|-", "@ARGV") || die; syswrite($fh, $buf); while($read = sysread(STDIN, $buf, 32768)) { syswrite($fh, $buf); @@ -6019,7 +6019,8 @@ sub empty_input_wrapper { } }); ::debug("run",'Empty wrap: perl -e '.::shell_quote_scalar($script)."\n"); - return 'perl -e '.::shell_quote_scalar($script); + return 'perl -e '.::shell_quote_scalar($script)." ". + ::shell_quote_scalar($Global::shell." -c ".::shell_quote_scalar($command)); } sub filter_through_compress { diff --git a/src/parallel.pod b/src/parallel.pod index ab1c6c29..f8ee2180 100644 --- a/src/parallel.pod +++ b/src/parallel.pod @@ -4497,7 +4497,10 @@ version. =item * -A complete example that others can run that shows the problem +A minimal, complete, and verifiable example (See description on +http://stackoverflow.com/help/mcve). + +It should be a complete example that others can run that shows the problem including all files needed to run the example. This should preferably be small and simple, so try to remove as many options as possible. A combination of B, B, B, B, and B can diff --git a/src/sql b/src/sql index ab37228a..c34bcebd 100755 --- a/src/sql +++ b/src/sql @@ -566,7 +566,7 @@ $Global::Initfile && unlink $Global::Initfile; exit ($err); sub parse_options { - $Global::version = 20150822; + $Global::version = 20150922; $Global::progname = 'sql'; # This must be done first as this may exec myself