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Released as 20150222 (' (((:~{> Krudttønden').

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Ole Tange 2015-02-22 15:21:00 +01:00
parent a9dc4f3ea4
commit 72819bdcba
10 changed files with 76 additions and 25 deletions
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51
NEWS
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@ -1,3 +1,54 @@
20150222
* --tmux has gotten a major overhaul.
* GNU Parallel was cited in: RaftLib: A C++ Template Library for High
Performance Stream Parallel Processing
http://www.cs.wustl.edu/~lip/pubs/pmam15_jbeard.pdf
* GNU Parallel was cited in: Towards Collaborative Exploration and
Analysis of Big Data from Mars: A Noachis Terra Case Study
http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
* GNU Parallel was cited in: Quantifying properties of hot and dense
QCD matter through systematic model-to-data comparison
http://arxiv.org/pdf/1502.00339.pdf
* GNU Parallel was cited in: Towards Collaborative Exploration and
Analysis of Big Data from Mars: A Noachis Terra Case Study
http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
* GNU Parallel was cited in: Towards Recommender Engineering Tools and
Experiments for Identifying Recommender Differences
http://elehack.net/research/thesis/mde-thesis.pdf
* GNU Parallel was using (unfortunately with wrong citation) in:
Performance and Scaling Comparison Study of RDBMS and NoSQL
(MongoDB)
http://ijact.in/wp-content/uploads/2014/11/COMPUSOFT-311-1270-1275.pdf
* GNU Parallel was used (unfortunately without citation) in: Parallel
Implementation of Big Data Pre-Processing Algorithms for Sentiment
Analysis of Social Networking Data
http://www.researchmathsci.org/IJFMAart/ijfma-v6n2-7.pdf
* GNU Parallel was used (unfortunately without citation) in: SpeedSeq:
Ultra-fast personal genome analysis and interpretation
http://biorxiv.org/content/biorxiv/early/2014/12/05/012179.full.pdf
* Zip Folders with GNU Parallel
http://fazky.github.io/Linux/2015-01-07-GNU-Parallel.html
* Using GNU Parallel with Freesurfer
http://programminginadarkroom.blogspot.dk/2015/02/using-gnu-parallel-with-freesurfer.html
* GNU Parallel is used in Velociraptor: https://github.com/ericwhyne/Velociraptor
* Marcus Beach GNU Parallel http://marcusbeach.co/gnu-parallel/
* Bug fixes and man page updates.
20150122 20150122
* Remote jobs now send stderr (standard error) to stderr (standard * Remote jobs now send stderr (standard error) to stderr (standard

12
README
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@ -40,9 +40,9 @@ document.
Full installation of GNU Parallel is as simple as: Full installation of GNU Parallel is as simple as:
wget http://ftpmirror.gnu.org/parallel/parallel-20150122.tar.bz2 wget http://ftpmirror.gnu.org/parallel/parallel-20150222.tar.bz2
bzip2 -dc parallel-20150122.tar.bz2 | tar xvf - bzip2 -dc parallel-20150222.tar.bz2 | tar xvf -
cd parallel-20150122 cd parallel-20150222
./configure && make && make install ./configure && make && make install
@ -51,9 +51,9 @@ Full installation of GNU Parallel is as simple as:
If you are not root you can add ~/bin to your path and install in If you are not root you can add ~/bin to your path and install in
~/bin and ~/share: ~/bin and ~/share:
wget http://ftpmirror.gnu.org/parallel/parallel-20150122.tar.bz2 wget http://ftpmirror.gnu.org/parallel/parallel-20150222.tar.bz2
bzip2 -dc parallel-20150122.tar.bz2 | tar xvf - bzip2 -dc parallel-20150222.tar.bz2 | tar xvf -
cd parallel-20150122 cd parallel-20150222
./configure --prefix=$HOME && make && make install ./configure --prefix=$HOME && make && make install
Or if your system lacks 'make' you can simply copy src/parallel Or if your system lacks 'make' you can simply copy src/parallel

20
configure vendored
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@ -1,6 +1,6 @@
#! /bin/sh #! /bin/sh
# Guess values for system-dependent variables and create Makefiles. # Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for parallel 20150122. # Generated by GNU Autoconf 2.69 for parallel 20150222.
# #
# Report bugs to <bug-parallel@gnu.org>. # Report bugs to <bug-parallel@gnu.org>.
# #
@ -579,8 +579,8 @@ MAKEFLAGS=
# Identity of this package. # Identity of this package.
PACKAGE_NAME='parallel' PACKAGE_NAME='parallel'
PACKAGE_TARNAME='parallel' PACKAGE_TARNAME='parallel'
PACKAGE_VERSION='20150122' PACKAGE_VERSION='20150222'
PACKAGE_STRING='parallel 20150122' PACKAGE_STRING='parallel 20150222'
PACKAGE_BUGREPORT='bug-parallel@gnu.org' PACKAGE_BUGREPORT='bug-parallel@gnu.org'
PACKAGE_URL='' PACKAGE_URL=''
@ -1203,7 +1203,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing. # Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh. # This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF cat <<_ACEOF
\`configure' configures parallel 20150122 to adapt to many kinds of systems. \`configure' configures parallel 20150222 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]... Usage: $0 [OPTION]... [VAR=VALUE]...
@ -1269,7 +1269,7 @@ fi
if test -n "$ac_init_help"; then if test -n "$ac_init_help"; then
case $ac_init_help in case $ac_init_help in
short | recursive ) echo "Configuration of parallel 20150122:";; short | recursive ) echo "Configuration of parallel 20150222:";;
esac esac
cat <<\_ACEOF cat <<\_ACEOF
@ -1345,7 +1345,7 @@ fi
test -n "$ac_init_help" && exit $ac_status test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then if $ac_init_version; then
cat <<\_ACEOF cat <<\_ACEOF
parallel configure 20150122 parallel configure 20150222
generated by GNU Autoconf 2.69 generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc. Copyright (C) 2012 Free Software Foundation, Inc.
@ -1362,7 +1362,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake. running configure, to aid debugging if configure makes a mistake.
It was created by parallel $as_me 20150122, which was It was created by parallel $as_me 20150222, which was
generated by GNU Autoconf 2.69. Invocation command line was generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@ $ $0 $@
@ -2225,7 +2225,7 @@ fi
# Define the identity of the package. # Define the identity of the package.
PACKAGE='parallel' PACKAGE='parallel'
VERSION='20150122' VERSION='20150222'
cat >>confdefs.h <<_ACEOF cat >>confdefs.h <<_ACEOF
@ -2867,7 +2867,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their # report actual input values of CONFIG_FILES etc. instead of their
# values after options handling. # values after options handling.
ac_log=" ac_log="
This file was extended by parallel $as_me 20150122, which was This file was extended by parallel $as_me 20150222, which was
generated by GNU Autoconf 2.69. Invocation command line was generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES CONFIG_FILES = $CONFIG_FILES
@ -2929,7 +2929,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\ ac_cs_version="\\
parallel config.status 20150122 parallel config.status 20150222
configured by $0, generated by GNU Autoconf 2.69, configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\" with options \\"\$ac_cs_config\\"

2
configure.ac
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@ -1,4 +1,4 @@
AC_INIT([parallel], [20150122], [bug-parallel@gnu.org]) AC_INIT([parallel], [20150222], [bug-parallel@gnu.org])
AM_INIT_AUTOMAKE([-Wall -Werror foreign]) AM_INIT_AUTOMAKE([-Wall -Werror foreign])
AC_CONFIG_HEADERS([config.h]) AC_CONFIG_HEADERS([config.h])
AC_CONFIG_FILES([ AC_CONFIG_FILES([

2
doc/release_new_version
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@ -100,7 +100,7 @@ https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
== Download and test == == Download and test ==
# Only needed for alpha # Only needed for alpha (part of 'make upload')
YYYYMMDD=`yyyymmdd` YYYYMMDD=`yyyymmdd`
pushd /tmp pushd /tmp

2
packager/obs/home:tange/parallel/parallel.spec
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@ -1,6 +1,6 @@
Summary: Shell tool for executing jobs in parallel Summary: Shell tool for executing jobs in parallel
Name: parallel Name: parallel
Version: 20150122 Version: 20150222
Release: 1 Release: 1
License: GPL License: GPL
Group: Productivity/File utilities Group: Productivity/File utilities

2
src/niceload
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@ -24,7 +24,7 @@
use strict; use strict;
use Getopt::Long; use Getopt::Long;
$Global::progname="niceload"; $Global::progname="niceload";
$Global::version = 20150122; $Global::version = 20150222;
Getopt::Long::Configure("bundling","require_order"); Getopt::Long::Configure("bundling","require_order");
get_options_from_array(\@ARGV) || die_usage(); get_options_from_array(\@ARGV) || die_usage();
if($opt::version) { if($opt::version) {

2
src/parallel
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@ -953,7 +953,7 @@ sub parse_options {
sub init_globals { sub init_globals {
# Defaults: # Defaults:
$Global::version = 20150201; $Global::version = 20150222;
$Global::progname = 'parallel'; $Global::progname = 'parallel';
$Global::infinity = 2**31; $Global::infinity = 2**31;
$Global::debug = 0; $Global::debug = 0;

6
src/parallel.pod
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@ -1392,7 +1392,7 @@ useful if some jobs fail for no apparent reason (such as network
failure). failure).
=item B<--return> I<filename> (beta testing) =item B<--return> I<filename> (alpha testing)
Transfer files from remote computers. B<--return> is used with Transfer files from remote computers. B<--return> is used with
B<--sshlogin> when the arguments are files on the remote computers. When B<--sshlogin> when the arguments are files on the remote computers. When
@ -1768,7 +1768,7 @@ the lines will be prepended with the sshlogin instead.
B<--tag> is ignored when using B<-u>. B<--tag> is ignored when using B<-u>.
=item B<--tagstring> I<str> =item B<--tagstring> I<str> (alpha testing)
Tag lines with a string. Each output line will be prepended with Tag lines with a string. Each output line will be prepended with
I<str> and TAB (\t). I<str> can contain replacement strings such as I<str> and TAB (\t). I<str> can contain replacement strings such as
@ -1785,7 +1785,7 @@ different dir for the files. Setting B<--tmpdir> is equivalent to
setting $TMPDIR. setting $TMPDIR.
=item B<--tmux> =item B<--tmux> (alpha testing)
Use B<tmux> for output. Start a B<tmux> session and run each job in a Use B<tmux> for output. Start a B<tmux> session and run each job in a
window in that session. No other output will be produced. window in that session. No other output will be produced.

2
src/sql
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@ -566,7 +566,7 @@ $Global::Initfile && unlink $Global::Initfile;
exit ($err); exit ($err);
sub parse_options { sub parse_options {
$Global::version = 20150122; $Global::version = 20150222;
$Global::progname = 'sql'; $Global::progname = 'sql';
# This must be done first as this may exec myself # This must be done first as this may exec myself