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parallel: Implemented {#}. Passes testsuite.
This commit is contained in:
Ole Tange
parent
a14fabad36
commit
7b4f747877
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@ -1,3 +1,30 @@
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Bug: parallel --colsep ')' echo {1}
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job->start():
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$jobslot = Global::jobslot->$sshlogin
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sub get_jobslot {
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my $sshlogin = shift;
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my $jobslot_id = pop @Global::jobslots{$sshlogin};
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if not defined $jobslot_id {
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$jobslot_id = ++$Global::max_jobslot_id;
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}
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return $jobslot_id;
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}
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sub release_jobslot {
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my $sshlogin = shift;
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my $jobslot_id = shift;
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push @Global::jobslots{$sshlogin}, $jobslot_id;
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}
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Test sshlogins in parallel. Assume parallel is in path
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seq 1 10 | parallel -I {o} 'seq 1 255 | parallel echo ssh -oNoHostAuthenticationForLocalhost=true 127.0.{o}.{}' >/tmp/sshloginfile
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seq 1 1000 | parallel --sshloginfile /tmp/sshloginfile echo
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ssh -F /tmp/
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Example:
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Chop mbox into emails
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Parallel sort
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73
src/parallel
73
src/parallel
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@ -306,6 +306,7 @@ sub get_options_from_array {
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"extensionreplace|U=s" => \$::opt_U,
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"basenamereplace|bnr=s" => \$::opt_basenamereplace,
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"basenameextensionreplace=s" => \$::opt_basenameextensionreplace,
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"seqreplace=s" => \$::opt_seqreplace,
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"jobs|j=s" => \$::opt_P,
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"load=f" => \$::opt_load,
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"max-line-length-allowed" => \$::opt_max_line_length_allowed,
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@ -361,7 +362,7 @@ sub get_options_from_array {
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"interactive|p" => \$::opt_p,
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"verbose|t" => \$::opt_verbose,
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"version|V" => \$::opt_version,
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"show-limits" => \$::opt_show_limits,
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"show-limits|showlimits" => \$::opt_show_limits,
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"exit|x" => \$::opt_x,
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# Semaphore
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"semaphore" => \$::opt_semaphore,
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@ -384,7 +385,7 @@ sub get_options_from_array {
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sub parse_options {
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# Returns: N/A
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# Defaults:
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$Global::version = 20110324;
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$Global::version = 20110408;
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$Global::progname = 'parallel';
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$Global::infinity = 2**31;
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$Global::debug = 0;
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@ -396,6 +397,7 @@ sub parse_options {
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$Global::replace{'{.}'} = '{.}';
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$Global::replace{'{/}'} = '{/}';
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$Global::replace{'{/.}'} = '{/.}';
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$Global::replace{'{#}'} = '{#}';
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$/="\n";
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$Global::ignore_empty = 0;
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$Global::interactive = 0;
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@ -433,6 +435,9 @@ sub parse_options {
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if(defined $::opt_basenameextensionreplace) {
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$Global::replace{'{/.}'} = $::opt_basenameextensionreplace;
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}
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if(defined $::opt_seqreplace) {
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$Global::replace{'{#}'} = $::opt_seqreplace;
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}
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if(defined $::opt_E) { $Global::end_of_file_string = $::opt_E; }
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if(defined $::opt_n) { $Global::max_number_of_args = $::opt_n; }
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if(defined $::opt_N) { $Global::max_number_of_args = $::opt_N; }
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@ -556,7 +561,7 @@ sub parse_options {
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}
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if(not defined $::opt_P) {
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$::opt_P = "+0";
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$::opt_P = "100%";
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}
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if($::opt_joblog) {
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if(not open($Global::joblog,">$::opt_joblog")) {
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@ -565,7 +570,7 @@ sub parse_options {
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} else {
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print $Global::joblog
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join("\t", "Seq", "Host", "Starttime", "Runtime",
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"Send", "Receive", "Status", "Command"
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"Send", "Receive", "Exitval", "Command"
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). "\n";
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}
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}
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@ -2375,7 +2380,7 @@ sub new {
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'unget' => \@unget,
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'commandlinequeue' => $commandlinequeue,
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'total_jobs' => undef,
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'next_seq' => 1,
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# 'next_seq' => 1,
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}, ref($class) || $class;
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}
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@ -2389,8 +2394,6 @@ sub get {
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my $commandline = $self->{'commandlinequeue'}->get();
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if(defined $commandline) {
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my $job = Job->new($commandline);
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$job->set_seq($self->{'next_seq'});
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$self->{'next_seq'}++;
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return $job;
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} else {
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return undef;
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@ -2427,7 +2430,7 @@ sub total_jobs {
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sub next_seq {
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my $self = shift;
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return $self->{'next_seq'};
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return $self->{'commandlinequeue'}->seq();
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}
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sub quote_args {
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@ -2444,7 +2447,6 @@ sub new {
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return bless {
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'commandline' => $commandline, # The commandline with no args
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'workdir' => undef, # --workdir
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'seq' => undef, # $PARALLEL_SEQ
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'stdin' => undef, # filehandle for stdin (used for --spreadstdin)
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'stdout' => undef, # filehandle for stdout (used for --group)
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'stdoutfilename' => undef, # filename for writing stdout to (used for --files)
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@ -2465,24 +2467,18 @@ sub new {
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sub replaced {
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my $self = shift;
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$self->{'commandline'} or Carp::croak("cmdline empty");
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return $self->{'commandline'}->replaced();
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}
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sub set_seq {
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my $self = shift;
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my $seq = shift;
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$self->{'seq'} = $seq;
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}
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sub seq {
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my $self = shift;
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return $self->{'seq'};
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return $self->{'commandline'}->seq();
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}
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sub set_stdout {
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my $self = shift;
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my $stdout = shift;
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$self->{'stdout'} = $stdout;
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$self->{'stdout'} = shift;
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}
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sub stdout {
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@ -2492,8 +2488,7 @@ sub stdout {
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sub set_stdoutfilename {
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my $self = shift;
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my $stdoutfilename = shift;
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$self->{'stdoutfilename'} = $stdoutfilename;
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$self->{'stdoutfilename'} = shift;
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}
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sub stdoutfilename {
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@ -2508,8 +2503,7 @@ sub stderr {
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sub set_stderr {
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my $self = shift;
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my $stderr = shift;
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$self->{'stderr'} = $stderr;
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$self->{'stderr'} = shift;
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}
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sub stdin {
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@ -2573,8 +2567,7 @@ sub pid {
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sub set_pid {
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my $self = shift;
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my $pid = shift;
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$self->{'pid'} = $pid;
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$self->{'pid'} = shift;
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}
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sub starttime {
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@ -2876,7 +2869,7 @@ sub workdir {
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$workdir =~ s:/+$::; # Remove ending / if any
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$workdir =~ s:^\./::g; # Remove starting ./ if any
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} else {
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$workdir = ".parallel/tmp/".::hostname()."-".$$."-".$self->{'seq'};
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$workdir = ".parallel/tmp/".::hostname()."-".$$."-".$self->seq();
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}
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} else {
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$workdir = ".";
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@ -3098,6 +3091,7 @@ package CommandLine;
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sub new {
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my $class = shift;
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my $seq = shift;
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my $command = ::undef_as_empty(shift);
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my $arg_queue = shift;
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my $context_replace = shift;
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@ -3135,6 +3129,7 @@ sub new {
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return bless {
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'command' => $command,
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'seq' => $seq,
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'len' => $len,
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'arg_list' => [],
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'arg_queue' => $arg_queue,
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@ -3148,6 +3143,11 @@ sub new {
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}, ref($class) || $class;
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}
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sub seq {
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my $self = shift;
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return $self->{'seq'};
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}
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sub populate {
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# Add arguments from arg_queue until the number of arguments or
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# max line length is reached
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@ -3372,10 +3372,10 @@ sub number_of_replacements {
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}
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for my $k (keys %count) {
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if(defined $Global::replace{$k}) {
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# {} {/} {.} {/.}
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# {} {/} {.} {/.} {#}
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$context -= (length $Global::replace{$k}) * $count{$k};
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} else {
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# {#}
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# {n}
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$context -= (length $k) * $count{$k};
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}
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}
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@ -3430,7 +3430,7 @@ sub replace_placeholders {
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# we have a matching argument for {n}
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$replace_single{$used} = $args[$positional-1]->replace($replacementfunction);
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}
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} elsif($used =~ /^{\D*}$/) {
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} elsif($used =~ /^(\{\}|\{\/\}|\{\.\}|\{\/\.\})$/) {
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# Add to the multireplacement
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my $replacementfunction = $used; # {} {/} {.} or {/.}
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CORE::push @used_multi, $replacementfunction;
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@ -3444,6 +3444,8 @@ sub replace_placeholders {
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map { $args[$_]->replace($replacementfunction) }
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0 .. $#args);
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}
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} elsif($used eq '{#}') {
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$replace_single{$Global::replace{$used}} = $self->seq();
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} else {
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::die_bug('replace_placeholders20110309');
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}
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@ -3540,9 +3542,20 @@ sub new {
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'max_number_of_args' => $max_number_of_args,
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'size' => undef,
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'return_files' => $return_files,
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'seq' => 1,
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}, ref($class) || $class;
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}
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sub seq {
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my $self = shift;
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return $self->{'seq'};
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}
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sub set_seq {
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my $self = shift;
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$self->{'seq'} = shift;
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}
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sub quote_args {
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my $self = shift;
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# If there is not command emulate |bash
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@ -3556,13 +3569,15 @@ sub get {
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return ($cmd_line);
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} else {
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my $cmd_line;
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$cmd_line = CommandLine->new($self->{'command'},
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$cmd_line = CommandLine->new($self->seq(),
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$self->{'command'},
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$self->{'arg_queue'},
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$self->{'context_replace'},
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$self->{'max_number_of_args'},
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$self->{'return_files'},
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);
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$cmd_line->populate();
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$self->set_seq($self->seq()+1);
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::debug("cmd_line->number_of_args ".$cmd_line->number_of_args()."\n");
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if(not $::opt_pipe and $cmd_line->number_of_args() == 0) {
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# We did not get more args - maybe at EOF string?
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@ -106,6 +106,13 @@ B<{/.}> can be used the same places as B<{}>. The replacement string
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B<{/.}> can be changed with B<--basenameextensionreplace>.
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=item B<{#}> (alpha testing)
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Sequence number of the job to run. The same as $PARALLEL_SEQ.
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The replacement string B<{#}> can be changed with B<--seqreplace>.
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=item B<{>I<n>B<}>
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Argument from argument file I<n> or the I<n>'th argument. See B<-a>
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@ -230,7 +237,8 @@ I<file> will be transferred the same way as B<--transfer>.
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=item B<--bnr> I<replace-str>
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Use the replacement string I<replace-str> instead of B<{/}> for basename of input line.
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Use the replacement string I<replace-str> instead of B<{/}> for
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basename of input line.
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=item B<--basenameextensionreplace> I<replace-str>
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@ -865,6 +873,12 @@ If the semaphore is not released within secs seconds, take it anyway.
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Implies B<--semaphore>.
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=item B<--seqreplace> I<replace-str>
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Use the replacement string I<replace-str> instead of B<{#}> for
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job sequence number.
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=item B<--skip-first-line>
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Do not use the first line of input (used by GNU B<parallel> itself
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@ -1453,6 +1467,14 @@ B<find . -type f | parallel -k -j150% -n 1000 -m grep -H -n STRING {}>
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This will run 1.5 job per core, and give 1000 arguments to B<grep>.
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To grep a big file in parallel use B<--pipe>:
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B<cat bigfile | parallel --pipe grep foo>
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Depending on your disks and CPUs it may be faster to read larger blocks:
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B<cat bigfile | parallel --pipe --block 10M grep foo>
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=head1 EXAMPLE: Using remote computers
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@ -6,22 +6,22 @@ seq 1 1000000 >/tmp/parallel-seq
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shuf --random-source=/tmp/parallel-seq /tmp/parallel-seq >/tmp/blocktest
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echo '### Test -N with multiple jobslots and multiple args'
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seq 1 1 | parallel -j2 -k -N 3 --pipe 'cat;echo a;sleep 0.1'
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seq 1 2 | parallel -j2 -k -N 3 --pipe 'cat;echo bb;sleep 0.1'
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seq 1 3 | parallel -j2 -k -N 3 --pipe 'cat;echo ccc;sleep 0.1'
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seq 1 4 | parallel -j2 -k -N 3 --pipe 'cat;echo dddd;sleep 0.1'
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seq 1 5 | parallel -j2 -k -N 3 --pipe 'cat;echo eeeee;sleep 0.1'
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seq 1 6 | parallel -j2 -k -N 3 --pipe 'cat;echo ffffff;sleep 0.1'
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seq 1 7 | parallel -j2 -k -N 3 --pipe 'cat;echo ggggggg;sleep 0.1'
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seq 1 8 | parallel -j2 -k -N 3 --pipe 'cat;echo hhhhhhhh;sleep 0.1'
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seq 1 9 | parallel -j2 -k -N 3 --pipe 'cat;echo iiiiiiiii;sleep 0.1'
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seq 1 10 | parallel -j2 -k -N 3 --pipe 'cat;echo jjjjjjjjjj;sleep 0.1'
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seq 1 1 | parallel -j2 -k -N 3 --pipe 'cat;echo a' | uniq
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seq 1 2 | parallel -j2 -k -N 3 --pipe 'cat;echo bb' | uniq
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seq 1 3 | parallel -j2 -k -N 3 --pipe 'cat;echo ccc' | uniq
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seq 1 4 | parallel -j2 -k -N 3 --pipe 'cat;echo dddd' | uniq
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seq 1 5 | parallel -j2 -k -N 3 --pipe 'cat;echo eeeee' | uniq
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seq 1 6 | parallel -j2 -k -N 3 --pipe 'cat;echo ffffff' | uniq
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seq 1 7 | parallel -j2 -k -N 3 --pipe 'cat;echo ggggggg' | uniq
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seq 1 8 | parallel -j2 -k -N 3 --pipe 'cat;echo hhhhhhhh' | uniq
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seq 1 9 | parallel -j2 -k -N 3 --pipe 'cat;echo iiiiiiiii' | uniq
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seq 1 10 | parallel -j2 -k -N 3 --pipe 'cat;echo jjjjjjjjjj' | uniq
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echo '### Test -l -N -L and -n with multiple jobslots and multiple args'
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seq 1 5 | parallel -kj2 -l 2 --pipe "cat; echo a; sleep 0.1"
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seq 1 5 | parallel -kj2 -N 2 --pipe "cat; echo b; sleep 0.1"
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seq 1 5 | parallel -kj2 -L 2 --pipe "cat; echo c; sleep 0.1"
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seq 1 5 | parallel -kj2 -n 2 --pipe "cat; echo d; sleep 0.1"
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seq 1 5 | parallel -kj2 -l 2 --pipe "cat; echo a" | uniq
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seq 1 5 | parallel -kj2 -N 2 --pipe "cat; echo b" | uniq
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seq 1 5 | parallel -kj2 -L 2 --pipe "cat; echo c" | uniq
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seq 1 5 | parallel -kj2 -n 2 --pipe "cat; echo d" | uniq
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echo '### Test output is the same for different block size'
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echo -n 01a02a0a0a12a34a45a6a |
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|
|
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7
testsuite/tests-to-run/test56.sh
Normal file
7
testsuite/tests-to-run/test56.sh
Normal file
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@ -0,0 +1,7 @@
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#!/bin/bash
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echo '### Test {#}'
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seq 1 10 | parallel -k echo {#}
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echo '### Test --seqreplace and line too long'
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seq 1 100 | stdout parallel -k --seqreplace I echo $(perl -e 'print "I"x130000') \|wc
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@ -2,16 +2,13 @@
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### Test -N with multiple jobslots and multiple args
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1
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a
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a
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1
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2
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bb
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bb
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1
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2
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3
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ccc
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ccc
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1
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2
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3
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@ -43,7 +40,6 @@ ggggggg
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ggggggg
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7
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ggggggg
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ggggggg
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1
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2
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3
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@ -55,7 +51,6 @@ hhhhhhhh
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7
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8
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hhhhhhhh
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hhhhhhhh
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1
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2
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3
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@ -68,7 +63,6 @@ iiiiiiiii
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8
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9
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iiiiiiiii
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iiiiiiiii
|
||||
1
|
||||
2
|
||||
3
|
||||
|
|
@ -92,7 +86,6 @@ a
|
|||
a
|
||||
5
|
||||
a
|
||||
a
|
||||
1
|
||||
2
|
||||
b
|
||||
|
|
@ -101,7 +94,6 @@ b
|
|||
b
|
||||
5
|
||||
b
|
||||
b
|
||||
1
|
||||
2
|
||||
c
|
||||
|
|
@ -110,7 +102,6 @@ c
|
|||
c
|
||||
5
|
||||
c
|
||||
c
|
||||
1
|
||||
2
|
||||
d
|
||||
|
|
@ -119,7 +110,6 @@ d
|
|||
d
|
||||
5
|
||||
d
|
||||
d
|
||||
### Test output is the same for different block size
|
||||
1>01a02a0a
|
||||
2>0a12a34a
|
||||
|
|
@ -147,6 +137,7 @@ d
|
|||
3>45
|
||||
4>6
|
||||
|
||||
5>
|
||||
### Test --rrs -N1 --recend single
|
||||
1>12a34
|
||||
2>45a6
|
||||
|
|
|
|||
21
testsuite/wanted-results/test56
Normal file
21
testsuite/wanted-results/test56
Normal file
|
|
@ -0,0 +1,21 @@
|
|||
### Test {#}
|
||||
1
|
||||
2
|
||||
3
|
||||
4
|
||||
5
|
||||
6
|
||||
7
|
||||
8
|
||||
9
|
||||
10
|
||||
### Test --seqreplace and line too long
|
||||
1 1 130001
|
||||
1 1 130001
|
||||
1 1 130001
|
||||
1 1 130001
|
||||
1 1 130001
|
||||
1 1 130001
|
||||
1 1 130001
|
||||
1 1 130001
|
||||
Command line too long (260009 >= 131071) at number 9: 10...
|
||||
Loading…
Reference in a new issue