Documentation update.

doc/release_new_version

@@ -209,9 +209,9 @@ from:tange@gnu.org
 to:parallel@gnu.org, bug-parallel@gnu.org
 stable-bcc: Jesse Alama <jessealama@fastmail.fm>
 
-Subject: GNU Parallel 20191022 ('Driving IT') released <<[stable]>>
+Subject: GNU Parallel 20191122 ('Berlin/Morales') released <<[stable]>>
 
-GNU Parallel 20191022 ('Driving IT') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
+GNU Parallel 20191122 ('') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
 
 <<No new functionality was introduced so this is a good candidate for a stable release.>>
 
@@ -221,30 +221,14 @@ See https://www.gnu.org/software/parallel/10-years-anniversary.html
 
 Quote of the month:
 
-  I've said it before: The command line program GNU Parallel is a godsend.
-    -- Jo Chr. Oterhals @oterhals@twitter
 
 New in this release:
 
-* --tee will use --output-error=warn-nopipe if supported by tee.
+* GNU Parallel was presented at Driving IT. Slides:
 
-* GNU Parallel will be presented at Driving IT 2019: https://ida.dk/arrangementer-og-kurser/konferencer/driving-it/tools
+https://blog.naderman.de/2019/11/14/restarting-supervisord-processes-in-parallel/
 
-* UMN Duluth: Job parallelization with task arrays and GNU parallel https://www.msi.umn.edu/tutorials/umn-duluth-job-parallelization-task-arrays-and-gnu-parallel
+* https://www.reddit.com/r/DataHoarder/comments/dsgmhc/parallel_archiving_techniques/
-
-* Genome updater uses GNU Parallel https://github.com/pirovc/genome_updater
-
-* Using GNU-Parallel for bioinformatics https://www.danielecook.com/using-gnu-parallel-for-bioinformatics/
-
-* Speeding up PostgreSQL ETL pipeline with the help of GODS https://cfengine.com/company/blog-detail/speeding-up-postgresql-etl-pipeline-with-the-help-of-gods/
-
-* Runing linux commands in parallel https://dev.to/voyeg3r/runing-linux-commands-in-parallel-4ff8
-
-* Research Computing University of Colorado Boulder contains an intro to GNU Parallel https://readthedocs.org/projects/curc/downloads/pdf/latest/
-
-* 如何使用Parallel在Shell中并行执行命令https://www.myfreax.com/gnu-parallel/
-
-* 如何测试 Amazon Elastic File System https://aws.amazon.com/cn/blogs/china/how-to-test-drive-amazon-elastic-file-system/
 
 * Bug fixes and man page updates.
 

src/parallel

@@ -1193,7 +1193,7 @@ sub nindex($$) {
 	    # until one is empty and a new block is passed
 	    if(@robin_queue) {
 		# Rotate queue once so new blocks get a fair chance
-		# to be given to another block
+		# to be given to another slot
 		push @robin_queue, shift @robin_queue;
 	    } else {
 		# Make a queue to spread the blocks evenly
@@ -1950,7 +1950,7 @@ sub parse_options(@) {
     # If you want GNU Parallel to be maintained in the future keep
     # this line.
     citation_notice();
-    # Seriously: YOU will be harming free software by removing the
+    # Seriously: *You* will be harming free software by removing the
     # notice.  You make it harder to justify spending time developing
     # it. If you *do* remove the line, please email
     # hallofshame@tange.dk if you want to avoid being put in a hall of
@@ -8291,7 +8291,7 @@ sub non_blocking_write($) {
     if (!defined($rv) && $! == ::EAGAIN()) {
 	# would block - but would have written
 	$something_written = 0;
-	# avoid triggering auto expanding block
+	# avoid triggering auto expanding block size
 	$Global::no_autoexpand_block ||= 1;
     } elsif ($self->{'block_pos'}+$rv != $self->{'block_length'}) {
 	# incomplete write
@@ -9174,6 +9174,10 @@ sub remote_cleanup($) {
 }
 
 sub exitstatuswrapper(@) {
+    # Input:
+    #   @shellcode = shell code to execute
+    # Returns:
+    #   shell script that returns current status after executing @shellcode
     if($Global::cshell) {
 	return ('set _EXIT_status=$status; ' .
 		join(" ",@_).
@@ -9185,7 +9189,6 @@ sub exitstatuswrapper(@) {
     }
 }
 
-
 sub workdir($) {
     # Returns:
     #   the workdir on a remote machine

src/parallel.pod

@@ -2847,6 +2847,7 @@ Exit if the size (see the B<-s> option) is exceeded.
 
 =back
 
+
 =head1 EXAMPLE: Working as xargs -n1. Argument appending
 
 GNU B<parallel> can work similar to B<xargs -n1>.
@@ -3992,7 +3993,13 @@ then the obvious solution would be this, but it B<does not work>:
 It does not work because the command is dequoted by B<ssh> twice where
 as GNU B<parallel> only expects it to be dequoted once.
 
-So instead put this in B<~/.ssh/config>:
+You can use a bash function and have GNU B<parallel> quote the command:
+
+  jumpssh() { ssh -A jumphost ssh $(parallel --shellquote ::: "$@"); }
+  export -f jumpssh
+  parallel --ssh jumpssh -S host1 echo ::: this works
+
+Or you can instead put this in B<~/.ssh/config>:
 
   Host host1 host2 host3
     ProxyCommand ssh jumphost.domain nc -w 1 %h 22
@@ -4224,6 +4231,25 @@ To run 100 processes simultaneously do:
 As there is not a I<command> the jobs will be evaluated by the shell.
 
 
+=head1 EXAMPLE: Call program with FASTA sequence
+
+FASTA files have the format:
+
+  >Sequence name1
+  sequence
+  sequence continued
+  >Sequence name2
+  sequence
+  sequence continued
+  more sequence
+
+To call B<myprog> with the sequence as argument run:
+
+  cat file.fasta |
+    parallel --pipe -N1 --recstart '>' --rrs \
+      'read a; echo Name: "$a"; myprog $(tr -d "\n")'
+
+
 =head1 EXAMPLE: Processing a big file using more CPUs
 
 To process a big file or some output you can use B<--pipe> to split up
@@ -5248,8 +5274,11 @@ A copy of the full license is included in the file as cc-by-sa.txt.
 =head1 DEPENDENCIES
 
 GNU B<parallel> uses Perl, and the Perl modules Getopt::Long,
-IPC::Open3, Symbol, IO::File, POSIX, and File::Temp. For remote usage
+IPC::Open3, Symbol, IO::File, POSIX, and File::Temp.
-it also uses rsync with ssh.
+
+For B<--csv> it uses the Perl module Text::CSV.
+
+For remote usage it uses B<rsync> with B<ssh>.
 
 
 =head1 SEE ALSO