Released as 20140222 ('Euromaidan').

This commit is contained in:
Ole Tange 2014-02-22 11:32:42 +01:00
parent 36b22df1f3
commit 7f955d2427
14 changed files with 131 additions and 53 deletions

69
NEWS
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@ -1,3 +1,72 @@
20140222
New in this release:
* --tollef has been retired.
* --compress has be redesigned due to bugs.
* Format of --eta and --joblog has changed slightly.
* GNU Parallel was cited in: Speaker Verification and Keyword Spotting
Systems for Forensic Applications
http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf
* GNU Parallel was cited in: Scaleable Code Clone Detection
http://scg.unibe.ch/archive/phd/schwarz-phd.pdf
* GNU Parallel was cited in: Clone Detection that scales
http://scg.unibe.ch/archive/masters/Vogt14a.pdf
* GNU Parallel was cited in: Scalable Positional Analysis for Studying
Evolution of Nodes in Networks
http://arxiv-web3.library.cornell.edu/pdf/1402.3797
* GNU Parallel was cited in: Aggregate Characterization of User
Behavior in Twitter and Analysis of the Retweet Graph
http://arxiv.org/pdf/1402.2671v1
* GNU Parallel was used (unfortunately without citation) in: Causal
Network Models for Predicting Compound Targets and Driving Pathways
in Cancer
http://jbx.sagepub.com/content/early/2014/02/10/1087057114522690.full
* GNU Parallel was used (unfortunately without citation) in:
Performance and Energy Efficiency of Common Compression /
Decompression Utilities
http://www.researchgate.net/publication/243962643_Performance_and_Energy_Efficiency_of_Common_CompressionDecompression_Utilities_An_Experimental_Study_in_Mobile_and_Workstation_Computer_Platforms/file/3deec51d1dbc0474f9.pdf
* GNU Parallel was used (unfortunately without citation) in: SpringFS:
Bridging Agility and Performance in Elastic Distributed Storage
http://www.istc-cc.cmu.edu/publications/papers/2014/SpringFS-FAST14.pdf
* GNU Parallel was recommended (without citation) in: Redesigning the
Specificity of Protein-DNA Interactions with Rosetta
http://link.springer.com/protocol/10.1007/978-1-62703-968-0_17
* GNU Parallel is co-distributed with RepeatExplorer
http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/repeatexplorer/README.txt
* Convert MP3 to a scrolling spectrum waterfall plot video
http://jdesbonnet.blogspot.dk/2014/02/convert-mp3-to-scrolling-spectrum.html
* PHP wrapper class for the GNU Parallel tool
https://github.com/geopal-solutions/gnu-parallel-wrapper/tree/master
* Exploratory Data Analysis http://www.slideshare.net/thinrhino/gnunify
* Copias de archivos con rsync y parallel
http://linuxmanr4.com/2014/02/20/copias-de-archivos-con-rsync-y-parallel
* Single-Thread-Programme auf Multicore-Rechnern parallelisieren
http://www.adlerweb.info/blog/2014/02/08/linux-single-thread-programme-auf-multicore-rechnern-parallelisieren
* Распараллеливаем процессы для ускорения вычислений и выполнения
заданий в Linux http://savepearlharbor.com/?p=210480
* Bug fixes and man page updates.
20140122
* GNU Parallel was cited in: On the likelihood of multiple bit upsets

12
README
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@ -40,9 +40,9 @@ document.
Full installation of GNU Parallel is as simple as:
wget http://ftpmirror.gnu.org/parallel/parallel-20140122.tar.bz2
bzip2 -dc parallel-20140122.tar.bz2 | tar xvf -
cd parallel-20140122
wget http://ftpmirror.gnu.org/parallel/parallel-20140222.tar.bz2
bzip2 -dc parallel-20140222.tar.bz2 | tar xvf -
cd parallel-20140222
./configure && make && make install
@ -51,9 +51,9 @@ Full installation of GNU Parallel is as simple as:
If you are not root you can add ~/bin to your path and install in
~/bin and ~/share:
wget http://ftpmirror.gnu.org/parallel/parallel-20140122.tar.bz2
bzip2 -dc parallel-20140122.tar.bz2 | tar xvf -
cd parallel-20140122
wget http://ftpmirror.gnu.org/parallel/parallel-20140222.tar.bz2
bzip2 -dc parallel-20140222.tar.bz2 | tar xvf -
cd parallel-20140222
./configure --prefix=$HOME && make && make install
Or if your system lacks 'make' you can simply copy src/parallel

20
configure vendored
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@ -1,6 +1,6 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for parallel 20140122.
# Generated by GNU Autoconf 2.69 for parallel 20140222.
#
# Report bugs to <bug-parallel@gnu.org>.
#
@ -579,8 +579,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='parallel'
PACKAGE_TARNAME='parallel'
PACKAGE_VERSION='20140122'
PACKAGE_STRING='parallel 20140122'
PACKAGE_VERSION='20140222'
PACKAGE_STRING='parallel 20140222'
PACKAGE_BUGREPORT='bug-parallel@gnu.org'
PACKAGE_URL=''
@ -1194,7 +1194,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
\`configure' configures parallel 20140122 to adapt to many kinds of systems.
\`configure' configures parallel 20140222 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@ -1260,7 +1260,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
short | recursive ) echo "Configuration of parallel 20140122:";;
short | recursive ) echo "Configuration of parallel 20140222:";;
esac
cat <<\_ACEOF
@ -1327,7 +1327,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
parallel configure 20140122
parallel configure 20140222
generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc.
@ -1344,7 +1344,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by parallel $as_me 20140122, which was
It was created by parallel $as_me 20140222, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
@ -2159,7 +2159,7 @@ fi
# Define the identity of the package.
PACKAGE='parallel'
VERSION='20140122'
VERSION='20140222'
cat >>confdefs.h <<_ACEOF
@ -2710,7 +2710,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by parallel $as_me 20140122, which was
This file was extended by parallel $as_me 20140222, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
@ -2772,7 +2772,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
parallel config.status 20140122
parallel config.status 20140222
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"

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@ -1,4 +1,4 @@
AC_INIT([parallel], [20140122], [bug-parallel@gnu.org])
AC_INIT([parallel], [20140222], [bug-parallel@gnu.org])
AM_INIT_AUTOMAKE([-Wall -Werror foreign])
AC_CONFIG_HEADERS([config.h])
AC_CONFIG_FILES([

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@ -124,6 +124,7 @@ https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
YYYYMMDD=`yyyymmdd`
pushd /tmp
rm -rf parallel-${YYYYMMDD}*
# This can take 7 minutes
while ! wget http://ftp.gnu.org/gnu/parallel/parallel-$YYYYMMDD.tar.bz2 ; do sleep 2; done
#wget http://alpha.gnu.org/gnu/parallel/parallel-$YYYYMMDD.tar.bz2
tar xjvf parallel-$YYYYMMDD.tar.bz2
@ -186,6 +187,8 @@ https://lists.gnu.org/mailman/admindb/bug-parallel
https://lists.gnu.org/mailman/admindb/parallel
<<<<<
file:///home/tange/privat/parallel/doc/release_new_version
from:tange@gnu.org
to:parallel@gnu.org, bug-parallel@gnu.org
cc:Sandro Cazzaniga <kharec@mandriva.org>,
@ -204,9 +207,9 @@ cc:Sandro Cazzaniga <kharec@mandriva.org>,
Ryoichiro Suzuki <ryoichiro.suzuki@gmail.com>,
Jesse Alama <jesse.alama@gmail.com>
Subject: GNU Parallel 20140222 ('Со́чи/Euromaidan') released
Subject: GNU Parallel 20140222 ('Euromaidan') released
GNU Parallel 20140222 ('Со́чи/Euromaidan') has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/
GNU Parallel 20140222 ('Euromaidan') has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/
Packagers that default to --tollef should take note that --tollef is now retired after a full year of being obsolete.
@ -219,6 +222,8 @@ New in this release:
* --compress has be redesigned due to bugs.
* Format of --eta and --joblog has changed slightly.
* GNU Parallel was cited in: Speaker Verification and Keyword Spotting Systems for Forensic Applications http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf
* GNU Parallel was cited in: Scaleable Code Clone Detection http://scg.unibe.ch/archive/phd/schwarz-phd.pdf

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@ -1,6 +1,6 @@
Summary: Shell tool for executing jobs in parallel
Name: parallel
Version: 20140122
Version: 20140222
Release: 1
License: GPL
Group: Productivity/File utilities

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@ -24,7 +24,7 @@
use strict;
use Getopt::Long;
$Global::progname="niceload";
$Global::version = 20140122;
$Global::version = 20140222;
Getopt::Long::Configure("bundling","require_order");
get_options_from_array(\@ARGV) || die_usage();
if($opt::version) {

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@ -626,7 +626,7 @@ sub get_options_from_array {
sub parse_options {
# Returns: N/A
# Defaults:
$Global::version = 20140221;
$Global::version = 20140222;
$Global::progname = 'parallel';
$Global::infinity = 2**31;
$Global::debug = 0;
@ -4103,7 +4103,6 @@ sub cattail {
sub openoutputfiles {
# Open files for STDOUT and STDERR
# Set file handles in $self->fh
# TODO non-blocking $opt::linebuffer
my $self = shift;
my ($outfhw, $errfhw, $outname, $errname);
if($opt::results) {

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@ -412,7 +412,7 @@ I<regexp> is a Perl Regular Expression:
http://perldoc.perl.org/perlre.html
=item B<--compress>
=item B<--compress> (alpha testing)
Compress temporary files. If the output is big and very compressible
this will take up less disk space in $TMPDIR and possibly be faster due to less
@ -423,11 +423,13 @@ B<plzip>, B<bzip2>, B<lzma>, B<lzip>, B<xz> in that order, and use the
first available.
=item B<--compress-program> I<prg>
=item B<--compress-program> I<prg> (alpha testing)
Use I<prg> for compressing temporary files. It is assumed that I<prg
=item B<--decompress-program> I<prg> (alpha testing)
Use I<prg> for (de)compressing temporary files. It is assumed that I<prg
-dc> will decompress stdin (standard input) to stdout (standard
output).
output) unless B<--decompress-program> is given.
=item B<--ctrlc>
@ -524,7 +526,7 @@ See also B<--bg>, B<man sem>.
Implies B<--semaphore>.
=item B<--filter-hosts> (beta testing)
=item B<--filter-hosts>
Remove down hosts. For each remote host: check that login through ssh
works. If not: do not use this host.
@ -744,7 +746,7 @@ B<-l 0> is an alias for B<-l 1>.
Implies B<-X> unless B<-m>, B<--xargs>, or B<--pipe> is set.
=item B<--line-buffer>
=item B<--line-buffer> (alpha testing)
Buffer output on line basis. B<--group> will keep the output together
for a whole job. B<--ungroup> allows output to mixup with half a line
@ -813,7 +815,7 @@ This is useful for scripts that depend on features only available from
a certain version of GNU B<parallel>.
=item B<--nonall> (beta testing)
=item B<--nonall>
B<--onall> with no arguments. Run the command on all computers given
with B<--sshlogin> but take no arguments. GNU B<parallel> will log
@ -824,7 +826,7 @@ This is useful for running the same command (e.g. uptime) on a list of
servers.
=item B<--onall> (beta testing)
=item B<--onall>
Run all the jobs on all computers given with B<--sshlogin>. GNU
B<parallel> will log into B<--jobs> number of computers in parallel
@ -1606,9 +1608,9 @@ Use B<-v> B<-v> to print the wrapping ssh command when running remotely.
Print the version GNU B<parallel> and exit.
=item B<--workdir> I<mydir> (beta testing)
=item B<--workdir> I<mydir>
=item B<--wd> I<mydir> (beta testing)
=item B<--wd> I<mydir>
Files transferred using B<--transfer> and B<--return> will be relative
to I<mydir> on remote computers, and the command will be executed in

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@ -434,8 +434,8 @@ separating the columns. The n'th column can be access using
@emph{regexp} is a Perl Regular Expression:
http://perldoc.perl.org/perlre.html
@item @strong{--compress}
@anchor{@strong{--compress}}
@item @strong{--compress} (alpha testing)
@anchor{@strong{--compress} (alpha testing)}
Compress temporary files. If the output is big and very compressible
this will take up less disk space in $TMPDIR and possibly be faster due to less
@ -445,12 +445,15 @@ GNU @strong{parallel} will try @strong{lzop}, @strong{pigz}, @strong{gzip}, @str
@strong{plzip}, @strong{bzip2}, @strong{lzma}, @strong{lzip}, @strong{xz} in that order, and use the
first available.
@item @strong{--compress-program} @emph{prg}
@anchor{@strong{--compress-program} @emph{prg}}
@item @strong{--compress-program} @emph{prg} (alpha testing)
@anchor{@strong{--compress-program} @emph{prg} (alpha testing)}
Use @emph{prg} for compressing temporary files. It is assumed that @emph{prg
@item @strong{--decompress-program} @emph{prg} (alpha testing)
@anchor{@strong{--decompress-program} @emph{prg} (alpha testing)}
Use @emph{prg} for (de)compressing temporary files. It is assumed that @emph{prg
-dc} will decompress stdin (standard input) to stdout (standard
output).
output) unless @strong{--decompress-program} is given.
@item @strong{--ctrlc}
@anchor{@strong{--ctrlc}}
@ -550,8 +553,8 @@ See also @strong{--bg}, @strong{man sem}.
Implies @strong{--semaphore}.
@item @strong{--filter-hosts} (beta testing)
@anchor{@strong{--filter-hosts} (beta testing)}
@item @strong{--filter-hosts}
@anchor{@strong{--filter-hosts}}
Remove down hosts. For each remote host: check that login through ssh
works. If not: do not use this host.
@ -794,8 +797,8 @@ standard specifies @strong{-L} instead.
Implies @strong{-X} unless @strong{-m}, @strong{--xargs}, or @strong{--pipe} is set.
@item @strong{--line-buffer}
@anchor{@strong{--line-buffer}}
@item @strong{--line-buffer} (alpha testing)
@anchor{@strong{--line-buffer} (alpha testing)}
Buffer output on line basis. @strong{--group} will keep the output together
for a whole job. @strong{--ungroup} allows output to mixup with half a line
@ -864,8 +867,8 @@ GNU @strong{parallel} is less than @emph{version} the exit code is
This is useful for scripts that depend on features only available from
a certain version of GNU @strong{parallel}.
@item @strong{--nonall} (beta testing)
@anchor{@strong{--nonall} (beta testing)}
@item @strong{--nonall}
@anchor{@strong{--nonall}}
@strong{--onall} with no arguments. Run the command on all computers given
with @strong{--sshlogin} but take no arguments. GNU @strong{parallel} will log
@ -875,8 +878,8 @@ computer. @strong{-j} adjusts how many computers to log into in parallel.
This is useful for running the same command (e.g. uptime) on a list of
servers.
@item @strong{--onall} (beta testing)
@anchor{@strong{--onall} (beta testing)}
@item @strong{--onall}
@anchor{@strong{--onall}}
Run all the jobs on all computers given with @strong{--sshlogin}. GNU
@strong{parallel} will log into @strong{--jobs} number of computers in parallel
@ -1720,11 +1723,11 @@ Use @strong{-v} @strong{-v} to print the wrapping ssh command when running remot
Print the version GNU @strong{parallel} and exit.
@item @strong{--workdir} @emph{mydir} (beta testing)
@anchor{@strong{--workdir} @emph{mydir} (beta testing)}
@item @strong{--workdir} @emph{mydir}
@anchor{@strong{--workdir} @emph{mydir}}
@item @strong{--wd} @emph{mydir} (beta testing)
@anchor{@strong{--wd} @emph{mydir} (beta testing)}
@item @strong{--wd} @emph{mydir}
@anchor{@strong{--wd} @emph{mydir}}
Files transferred using @strong{--transfer} and @strong{--return} will be relative
to @emph{mydir} on remote computers, and the command will be executed in

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@ -124,7 +124,7 @@
.\" ========================================================================
.\"
.IX Title "PARALLEL_TUTORIAL 1"
.TH PARALLEL_TUTORIAL 1 "2014-01-25" "20140122" "parallel"
.TH PARALLEL_TUTORIAL 1 "2014-01-25" "20140222" "parallel"
.\" For nroff, turn off justification. Always turn off hyphenation; it makes
.\" way too many mistakes in technical documents.
.if n .ad l

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@ -556,7 +556,7 @@ $Global::Initfile && unlink $Global::Initfile;
exit ($err);
sub parse_options {
$Global::version = 20140122;
$Global::version = 20140222;
$Global::progname = 'sql';
# This must be done first as this may exec myself

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