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Released as 20160122 ('Bowie')

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This commit is contained in:
Ole Tange 2016-01-23 10:46:58 +01:00
parent a4ead8224d
commit 7fd33c205a
12 changed files with 84 additions and 52 deletions
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50
NEWS
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@ -1,3 +1,53 @@
20160122
* --sql DBURL uses DBURL as storage for jobs and output. It does not
run any jobs so it requires at least one --sqlworker. DBURL must
point to a table.
* --sqlworker DBURL gets jobs from DBURL and stores the result back to
DBURL.
* --sqlandworker is a shorthand for --sql and --sqlworker.
* --sqlworker requires the output of a single job to fit in memory.
* --results now also saves a file called 'seq' containing the sequence
number.
* If $PARALLEL_ENV is a file, then that file will be read into
$PARALLEL_ENV.
* man parallel_tutorial has been given an overhaul.
* --workdir now accepts replacementstrings.
* GNU Parallel was cited in: Possum - A Framework for
Three-Dimensional Reconstruction of Brain Images rfom Serial
Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
* GNU Parallel was cited in: A Genetic Algorithm for the selection of
structural MRI features for classification of Mild Cognitive
Impairment and Alzheimer's Disease
http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
* GNU Parallel was cited in: The Effect of Domain Modeling on
Performance of Planning Algorithms
http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
* Plotting time tables for jobs run by GNU Parallel
https://github.com/ziotom78/plot_joblog
* GNU Parallel was used in: Mission Impossible: you have 1 minute to
analyze the Ebola Genome https://www.biostars.org/p/119397
* GNU Parallel is used in LAST: http://last.cbrc.jp/
* Distributed Log Search Using GNU Parallel
http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
* Bug fixes and man page updates.
20151222
* --transfer is now an alias for --transferfile {}.

12
README
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@ -40,9 +40,9 @@ document.
Full installation of GNU Parallel is as simple as:
wget http://ftpmirror.gnu.org/parallel/parallel-20160101.tar.bz2
bzip2 -dc parallel-20160101.tar.bz2 | tar xvf -
cd parallel-20160101
wget http://ftpmirror.gnu.org/parallel/parallel-20160122.tar.bz2
bzip2 -dc parallel-20160122.tar.bz2 | tar xvf -
cd parallel-20160122
./configure && make && sudo make install
@ -51,9 +51,9 @@ Full installation of GNU Parallel is as simple as:
If you are not root you can add ~/bin to your path and install in
~/bin and ~/share:
wget http://ftpmirror.gnu.org/parallel/parallel-20160101.tar.bz2
bzip2 -dc parallel-20160101.tar.bz2 | tar xvf -
cd parallel-20160101
wget http://ftpmirror.gnu.org/parallel/parallel-20160122.tar.bz2
bzip2 -dc parallel-20160122.tar.bz2 | tar xvf -
cd parallel-20160122
./configure --prefix=$HOME && make && make install
Or if your system lacks 'make' you can simply copy src/parallel

20
configure vendored
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@ -1,6 +1,6 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for parallel 20160101.
# Generated by GNU Autoconf 2.69 for parallel 20160122.
#
# Report bugs to <bug-parallel@gnu.org>.
#
@ -579,8 +579,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='parallel'
PACKAGE_TARNAME='parallel'
PACKAGE_VERSION='20160101'
PACKAGE_STRING='parallel 20160101'
PACKAGE_VERSION='20160122'
PACKAGE_STRING='parallel 20160122'
PACKAGE_BUGREPORT='bug-parallel@gnu.org'
PACKAGE_URL=''
@ -1203,7 +1203,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
\`configure' configures parallel 20160101 to adapt to many kinds of systems.
\`configure' configures parallel 20160122 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@ -1269,7 +1269,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
short | recursive ) echo "Configuration of parallel 20160101:";;
short | recursive ) echo "Configuration of parallel 20160122:";;
esac
cat <<\_ACEOF
@ -1345,7 +1345,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
parallel configure 20160101
parallel configure 20160122
generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc.
@ -1362,7 +1362,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by parallel $as_me 20160101, which was
It was created by parallel $as_me 20160122, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
@ -2225,7 +2225,7 @@ fi
# Define the identity of the package.
PACKAGE='parallel'
VERSION='20160101'
VERSION='20160122'
cat >>confdefs.h <<_ACEOF
@ -2867,7 +2867,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by parallel $as_me 20160101, which was
This file was extended by parallel $as_me 20160122, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
@ -2929,7 +2929,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
parallel config.status 20160101
parallel config.status 20160122
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"

2
configure.ac
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@ -1,4 +1,4 @@
AC_INIT([parallel], [20160101], [bug-parallel@gnu.org])
AC_INIT([parallel], [20160122], [bug-parallel@gnu.org])
AM_INIT_AUTOMAKE([-Wall -Werror foreign])
AC_CONFIG_HEADERS([config.h])
AC_CONFIG_FILES([

32
doc/release_new_version
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@ -4,7 +4,7 @@
Check that documentation is updated (compare to web):
Fixet for 20151122
Fixet for 20160122
git diff last-release-commit
Unmodified beta since last version => production
Unmodified alpha since last version => beta
@ -212,18 +212,16 @@ cc:Tim Cuthbertson <tim3d.junk@gmail.com>,
Ryoichiro Suzuki <ryoichiro.suzuki@gmail.com>,
Jesse Alama <jesse.alama@gmail.com>
Subject: GNU Parallel 20160122 ('') released <<[stable]>>
Subject: GNU Parallel 20160122 ('Bowie') released
GNU Parallel 20160122 ('') <<[stable]>> has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/
<<No new functionality was introduced so this is a good candidate for a stable release.>>
GNU Parallel 20160122 ('Bowie') has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/
Haiku of the month:
|||||
|||||||
Dash dash pipe too slow?
Dash dash pipepart is your friend.
Use GNU Parallel
-- Malcolm Cook
-- Ole Tange
New in this release:
@ -243,22 +241,6 @@ New in this release:
* --workdir now accepts replacementstrings.
* << kontakt GNU Parallel was used (unfortunately without citation) in: Instrumentation and Trace Analysis for Ad-hoc Python Workflows in Cloud Environments http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7214035>>
* <<Har angiveligt submittet ny version - afventer opdatering>> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345
* <<Afventer updateret publisering>> GNU Parallel was used in: Large Scale Author Name Disambiguation in Digital Libraries http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7004487&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7004487
* <<kontaktet 2015-06-22 Afventer svar fra journal>> GNU Parallel was used (unfortunately with wrong citation) in: TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics http://vruehle.de/publications/2015c.pdf
http://www.researchgate.net/profile/Christoph_Junghans/publication/276178326_TADSim_Discrete_Event-Based_Performance_Prediction_for_Temperature-Accelerated_Dynamics/links/55562b6708ae980ca60c8369.pdf
* << Update forventet juni Rachel har lige svaret >> GNU Parallel was used in: SISRS: Site Identification from Short Read Sequences https://github.com/rachelss/SISRS/
* <<Citation needed: A Cache- and Memory-Aware Mapping Algorithm
for Big Data Applications https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7323015>>
* <<Citation needed: Introspecting for RSA Key Material to Assist Intrusion Detection http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=7331177&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7331177>>
* GNU Parallel was cited in: Possum - A Framework for Three-Dimensional Reconstruction of Brain Images rfom Serial Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
* GNU Parallel was cited in: A Genetic Algorithm for the selection of structural MRI features for classification of Mild Cognitive Impairment and Alzheimer's Disease http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
@ -271,7 +253,7 @@ for Big Data Applications https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumb
* GNU Parallel is used in LAST: http://last.cbrc.jp/
* Distributed Log Search Using GNU Parallel http://blog.codehate.com/post/134320079974/distributed-log-search-using-gnu-parallel
* Distributed Log Search Using GNU Parallel http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
* Bug fixes and man page updates.

4
packager/obs/home:tange/parallel/parallel.spec
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@ -1,7 +1,7 @@
Summary: Shell tool for executing jobs in parallel
Name: parallel
Version: 20151222
Release: 1
Version: 20160122
Release: 1.1
License: GPL
Group: Productivity/File utilities
URL: ftp://ftp.gnu.org/gnu/parallel

2
src/Makefile.in
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@ -78,7 +78,7 @@ NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
subdir = src
DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/Makefile.am
DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/Makefile.am README
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/configure.ac
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \

2
src/niceload
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@ -24,7 +24,7 @@
use strict;
use Getopt::Long;
$Global::progname="niceload";
$Global::version = 20160101;
$Global::version = 20160122;
Getopt::Long::Configure("bundling","require_order");
get_options_from_array(\@ARGV) || die_usage();
if($opt::version) {

4
src/niceload.pod
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@ -32,9 +32,9 @@ run 1 second, suspend (3.00-1.00) seconds, run 1 second, suspend
=over 9
=item B<-B> (beta testing)
=item B<-B>
=item B<--battery> (beta testing)
=item B<--battery>
Suspend if the system is running on battery. Short hand for: -l -1 --sensor 'cat /sys/class/power_supply/BAT0/status /proc/acpi/battery/BAT0/state 2>/dev/null |grep -i -q discharging; echo $?'

2
src/parallel
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@ -1176,7 +1176,7 @@ sub check_invalid_option_combinations {
sub init_globals {
# Defaults:
$Global::version = 20160102;
$Global::version = 20160122;
$Global::progname = 'parallel';
$Global::infinity = 2**31;
$Global::debug = 0;

4
src/sem.pod
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@ -138,9 +138,9 @@ takes a person to the toilet, waits for the person to finish, and
exits.
=item B<--semaphoretimeout> I<secs> (beta testing)
=item B<--semaphoretimeout> I<secs>
=item B<--st> I<secs> (beta testing)
=item B<--st> I<secs>
If I<secs> > 0: If the semaphore is not released within I<secs>
seconds, take it anyway.

2
src/sql
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@ -566,7 +566,7 @@ $Global::Initfile && unlink $Global::Initfile;
exit ($err);
sub parse_options {
$Global::version = 20160101;
$Global::version = 20160122;
$Global::progname = 'sql';
# This must be done first as this may exec myself