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Released as 20160122 ('Bowie')
This commit is contained in:
Ole Tange
parent
a4ead8224d
commit
7fd33c205a
50
NEWS
50
NEWS
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@ -1,3 +1,53 @@
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20160122
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* --sql DBURL uses DBURL as storage for jobs and output. It does not
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run any jobs so it requires at least one --sqlworker. DBURL must
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point to a table.
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* --sqlworker DBURL gets jobs from DBURL and stores the result back to
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DBURL.
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* --sqlandworker is a shorthand for --sql and --sqlworker.
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* --sqlworker requires the output of a single job to fit in memory.
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* --results now also saves a file called 'seq' containing the sequence
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number.
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* If $PARALLEL_ENV is a file, then that file will be read into
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$PARALLEL_ENV.
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* man parallel_tutorial has been given an overhaul.
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* --workdir now accepts replacementstrings.
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* GNU Parallel was cited in: Possum - A Framework for
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Three-Dimensional Reconstruction of Brain Images rfom Serial
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Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
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* GNU Parallel was cited in: A Genetic Algorithm for the selection of
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structural MRI features for classification of Mild Cognitive
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Impairment and Alzheimer's Disease
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http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
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* GNU Parallel was cited in: The Effect of Domain Modeling on
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Performance of Planning Algorithms
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http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
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* Plotting time tables for jobs run by GNU Parallel
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https://github.com/ziotom78/plot_joblog
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* GNU Parallel was used in: Mission Impossible: you have 1 minute to
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analyze the Ebola Genome https://www.biostars.org/p/119397
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* GNU Parallel is used in LAST: http://last.cbrc.jp/
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* Distributed Log Search Using GNU Parallel
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http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
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* Bug fixes and man page updates.
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20151222
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* --transfer is now an alias for --transferfile {}.
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12
README
12
README
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@ -40,9 +40,9 @@ document.
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Full installation of GNU Parallel is as simple as:
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wget http://ftpmirror.gnu.org/parallel/parallel-20160101.tar.bz2
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bzip2 -dc parallel-20160101.tar.bz2 | tar xvf -
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cd parallel-20160101
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wget http://ftpmirror.gnu.org/parallel/parallel-20160122.tar.bz2
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bzip2 -dc parallel-20160122.tar.bz2 | tar xvf -
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cd parallel-20160122
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./configure && make && sudo make install
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@ -51,9 +51,9 @@ Full installation of GNU Parallel is as simple as:
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If you are not root you can add ~/bin to your path and install in
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~/bin and ~/share:
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wget http://ftpmirror.gnu.org/parallel/parallel-20160101.tar.bz2
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bzip2 -dc parallel-20160101.tar.bz2 | tar xvf -
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cd parallel-20160101
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wget http://ftpmirror.gnu.org/parallel/parallel-20160122.tar.bz2
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bzip2 -dc parallel-20160122.tar.bz2 | tar xvf -
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cd parallel-20160122
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./configure --prefix=$HOME && make && make install
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Or if your system lacks 'make' you can simply copy src/parallel
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20
configure
vendored
20
configure
vendored
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@ -1,6 +1,6 @@
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#! /bin/sh
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# Guess values for system-dependent variables and create Makefiles.
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# Generated by GNU Autoconf 2.69 for parallel 20160101.
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# Generated by GNU Autoconf 2.69 for parallel 20160122.
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#
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# Report bugs to <bug-parallel@gnu.org>.
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#
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@ -579,8 +579,8 @@ MAKEFLAGS=
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# Identity of this package.
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PACKAGE_NAME='parallel'
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PACKAGE_TARNAME='parallel'
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PACKAGE_VERSION='20160101'
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PACKAGE_STRING='parallel 20160101'
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PACKAGE_VERSION='20160122'
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PACKAGE_STRING='parallel 20160122'
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PACKAGE_BUGREPORT='bug-parallel@gnu.org'
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PACKAGE_URL=''
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@ -1203,7 +1203,7 @@ if test "$ac_init_help" = "long"; then
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# Omit some internal or obsolete options to make the list less imposing.
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# This message is too long to be a string in the A/UX 3.1 sh.
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cat <<_ACEOF
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\`configure' configures parallel 20160101 to adapt to many kinds of systems.
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\`configure' configures parallel 20160122 to adapt to many kinds of systems.
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Usage: $0 [OPTION]... [VAR=VALUE]...
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@ -1269,7 +1269,7 @@ fi
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if test -n "$ac_init_help"; then
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case $ac_init_help in
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short | recursive ) echo "Configuration of parallel 20160101:";;
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short | recursive ) echo "Configuration of parallel 20160122:";;
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esac
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cat <<\_ACEOF
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@ -1345,7 +1345,7 @@ fi
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test -n "$ac_init_help" && exit $ac_status
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if $ac_init_version; then
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cat <<\_ACEOF
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parallel configure 20160101
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parallel configure 20160122
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generated by GNU Autoconf 2.69
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Copyright (C) 2012 Free Software Foundation, Inc.
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@ -1362,7 +1362,7 @@ cat >config.log <<_ACEOF
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This file contains any messages produced by compilers while
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running configure, to aid debugging if configure makes a mistake.
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It was created by parallel $as_me 20160101, which was
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It was created by parallel $as_me 20160122, which was
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generated by GNU Autoconf 2.69. Invocation command line was
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$ $0 $@
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@ -2225,7 +2225,7 @@ fi
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# Define the identity of the package.
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PACKAGE='parallel'
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VERSION='20160101'
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VERSION='20160122'
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cat >>confdefs.h <<_ACEOF
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@ -2867,7 +2867,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
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# report actual input values of CONFIG_FILES etc. instead of their
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# values after options handling.
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ac_log="
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This file was extended by parallel $as_me 20160101, which was
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This file was extended by parallel $as_me 20160122, which was
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generated by GNU Autoconf 2.69. Invocation command line was
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CONFIG_FILES = $CONFIG_FILES
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@ -2929,7 +2929,7 @@ _ACEOF
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cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
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ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
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ac_cs_version="\\
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parallel config.status 20160101
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parallel config.status 20160122
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configured by $0, generated by GNU Autoconf 2.69,
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with options \\"\$ac_cs_config\\"
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@ -1,4 +1,4 @@
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AC_INIT([parallel], [20160101], [bug-parallel@gnu.org])
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AC_INIT([parallel], [20160122], [bug-parallel@gnu.org])
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AM_INIT_AUTOMAKE([-Wall -Werror foreign])
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AC_CONFIG_HEADERS([config.h])
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AC_CONFIG_FILES([
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@ -4,7 +4,7 @@
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Check that documentation is updated (compare to web):
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Fixet for 20151122
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Fixet for 20160122
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git diff last-release-commit
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Unmodified beta since last version => production
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Unmodified alpha since last version => beta
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@ -212,18 +212,16 @@ cc:Tim Cuthbertson <tim3d.junk@gmail.com>,
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Ryoichiro Suzuki <ryoichiro.suzuki@gmail.com>,
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Jesse Alama <jesse.alama@gmail.com>
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Subject: GNU Parallel 20160122 ('') released <<[stable]>>
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Subject: GNU Parallel 20160122 ('Bowie') released
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GNU Parallel 20160122 ('') <<[stable]>> has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/
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<<No new functionality was introduced so this is a good candidate for a stable release.>>
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GNU Parallel 20160122 ('Bowie') has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/
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Haiku of the month:
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Dash dash pipe too slow?
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Dash dash pipepart is your friend.
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Use GNU Parallel
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-- Malcolm Cook
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-- Ole Tange
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New in this release:
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@ -243,22 +241,6 @@ New in this release:
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* --workdir now accepts replacementstrings.
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* << kontakt GNU Parallel was used (unfortunately without citation) in: Instrumentation and Trace Analysis for Ad-hoc Python Workflows in Cloud Environments http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7214035>>
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* <<Har angiveligt submittet ny version - afventer opdatering>> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345
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* <<Afventer updateret publisering>> GNU Parallel was used in: Large Scale Author Name Disambiguation in Digital Libraries http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7004487&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7004487
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* <<kontaktet 2015-06-22 Afventer svar fra journal>> GNU Parallel was used (unfortunately with wrong citation) in: TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics http://vruehle.de/publications/2015c.pdf
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http://www.researchgate.net/profile/Christoph_Junghans/publication/276178326_TADSim_Discrete_Event-Based_Performance_Prediction_for_Temperature-Accelerated_Dynamics/links/55562b6708ae980ca60c8369.pdf
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* << Update forventet juni Rachel har lige svaret >> GNU Parallel was used in: SISRS: Site Identification from Short Read Sequences https://github.com/rachelss/SISRS/
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* <<Citation needed: A Cache- and Memory-Aware Mapping Algorithm
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for Big Data Applications https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7323015>>
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* <<Citation needed: Introspecting for RSA Key Material to Assist Intrusion Detection http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=7331177&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7331177>>
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* GNU Parallel was cited in: Possum - A Framework for Three-Dimensional Reconstruction of Brain Images rfom Serial Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
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* GNU Parallel was cited in: A Genetic Algorithm for the selection of structural MRI features for classification of Mild Cognitive Impairment and Alzheimer's Disease http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
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@ -271,7 +253,7 @@ for Big Data Applications https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumb
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* GNU Parallel is used in LAST: http://last.cbrc.jp/
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* Distributed Log Search Using GNU Parallel http://blog.codehate.com/post/134320079974/distributed-log-search-using-gnu-parallel
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* Distributed Log Search Using GNU Parallel http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
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* Bug fixes and man page updates.
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Summary: Shell tool for executing jobs in parallel
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Name: parallel
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Version: 20151222
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Release: 1
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Version: 20160122
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Release: 1.1
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License: GPL
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Group: Productivity/File utilities
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URL: ftp://ftp.gnu.org/gnu/parallel
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@ -78,7 +78,7 @@ NORMAL_UNINSTALL = :
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PRE_UNINSTALL = :
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POST_UNINSTALL = :
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subdir = src
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DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/Makefile.am
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DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/Makefile.am README
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ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
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am__aclocal_m4_deps = $(top_srcdir)/configure.ac
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am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
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use strict;
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use Getopt::Long;
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$Global::progname="niceload";
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$Global::version = 20160101;
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$Global::version = 20160122;
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Getopt::Long::Configure("bundling","require_order");
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get_options_from_array(\@ARGV) || die_usage();
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if($opt::version) {
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@ -32,9 +32,9 @@ run 1 second, suspend (3.00-1.00) seconds, run 1 second, suspend
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=over 9
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=item B<-B> (beta testing)
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=item B<-B>
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=item B<--battery> (beta testing)
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=item B<--battery>
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Suspend if the system is running on battery. Short hand for: -l -1 --sensor 'cat /sys/class/power_supply/BAT0/status /proc/acpi/battery/BAT0/state 2>/dev/null |grep -i -q discharging; echo $?'
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@ -1176,7 +1176,7 @@ sub check_invalid_option_combinations {
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sub init_globals {
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# Defaults:
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$Global::version = 20160102;
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$Global::version = 20160122;
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$Global::progname = 'parallel';
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$Global::infinity = 2**31;
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$Global::debug = 0;
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exits.
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=item B<--semaphoretimeout> I<secs> (beta testing)
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=item B<--semaphoretimeout> I<secs>
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=item B<--st> I<secs> (beta testing)
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=item B<--st> I<secs>
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If I<secs> > 0: If the semaphore is not released within I<secs>
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seconds, take it anyway.
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