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Released as 20171022 ('Catalonia')

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Ole Tange 2017-10-23 09:08:28 +02:00
parent 746b4304a6
commit 823645285f
11 changed files with 66 additions and 37 deletions
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28
NEWS
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@ -1,14 +1,40 @@
20171022
* Initial support for XDG Base Directory $XDG_* environment variables.
* Validating half a million TIFF files. Part
Two
https://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
* Turing data science class: Cluster computing
https://www.turing.ac.uk/events/masterclass-cluster-computing/
* Butlin:Unix for Bioinformatics - advanced tutorial
https://openwetware.org/wiki/Butlin:Unix_for_Bioinformatics_-_advanced_tutorial
* พยายามใช้ CPU ให้ครบทุก CORE
https://veer66.wordpress.com/2017/09/02/use-multi-core/
* Examples on using GNU Parallel
https://gist.github.com/drmalex07/de8ff1379a560f6d84a0d863e60ae378
* Bug fixes and man page updates.
20170922
* Use '--limit myprog' to make a dynamic job limit. Just return 0 to
spawn another job, 1 to not spawn another job, and 2 to kill the
youngest job.
* PARALLEL_RSYNC_OPTS and --rsync-opts sets the options for rsync (Default: -rlDzR).
* PARALLEL_RSYNC_OPTS and --rsync-opts sets the options for rsync
(Default: -rlDzR).
* Download all of humble bundle books in parallel
https://til.hashrocket.com/posts/ggt1jaes4y-download-all-of-humble-bundle-books-in-parallel
* Bug fixes and man page updates.
20170822

12
README
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@ -44,9 +44,9 @@ document.
Full installation of GNU Parallel is as simple as:
wget http://ftpmirror.gnu.org/parallel/parallel-20170922.tar.bz2
bzip2 -dc parallel-20170922.tar.bz2 | tar xvf -
cd parallel-20170922
wget http://ftpmirror.gnu.org/parallel/parallel-20171022.tar.bz2
bzip2 -dc parallel-20171022.tar.bz2 | tar xvf -
cd parallel-20171022
./configure && make && sudo make install
@ -55,9 +55,9 @@ Full installation of GNU Parallel is as simple as:
If you are not root you can add ~/bin to your path and install in
~/bin and ~/share:
wget http://ftpmirror.gnu.org/parallel/parallel-20170922.tar.bz2
bzip2 -dc parallel-20170922.tar.bz2 | tar xvf -
cd parallel-20170922
wget http://ftpmirror.gnu.org/parallel/parallel-20171022.tar.bz2
bzip2 -dc parallel-20171022.tar.bz2 | tar xvf -
cd parallel-20171022
./configure --prefix=$HOME && make && make install
Or if your system lacks 'make' you can simply copy src/parallel

20
configure vendored
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@ -1,6 +1,6 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for parallel 20170922.
# Generated by GNU Autoconf 2.69 for parallel 20171022.
#
# Report bugs to <bug-parallel@gnu.org>.
#
@ -579,8 +579,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='parallel'
PACKAGE_TARNAME='parallel'
PACKAGE_VERSION='20170922'
PACKAGE_STRING='parallel 20170922'
PACKAGE_VERSION='20171022'
PACKAGE_STRING='parallel 20171022'
PACKAGE_BUGREPORT='bug-parallel@gnu.org'
PACKAGE_URL=''
@ -1214,7 +1214,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
\`configure' configures parallel 20170922 to adapt to many kinds of systems.
\`configure' configures parallel 20171022 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@ -1281,7 +1281,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
short | recursive ) echo "Configuration of parallel 20170922:";;
short | recursive ) echo "Configuration of parallel 20171022:";;
esac
cat <<\_ACEOF
@ -1357,7 +1357,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
parallel configure 20170922
parallel configure 20171022
generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc.
@ -1374,7 +1374,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by parallel $as_me 20170922, which was
It was created by parallel $as_me 20171022, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
@ -2237,7 +2237,7 @@ fi
# Define the identity of the package.
PACKAGE='parallel'
VERSION='20170922'
VERSION='20171022'
cat >>confdefs.h <<_ACEOF
@ -2880,7 +2880,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by parallel $as_me 20170922, which was
This file was extended by parallel $as_me 20171022, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
@ -2942,7 +2942,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
parallel config.status 20170922
parallel config.status 20171022
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"

2
configure.ac
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@ -1,4 +1,4 @@
AC_INIT([parallel], [20170922], [bug-parallel@gnu.org])
AC_INIT([parallel], [20171022], [bug-parallel@gnu.org])
AM_INIT_AUTOMAKE([-Wall -Werror foreign])
AC_CONFIG_HEADERS([config.h])
AC_CONFIG_FILES([

21
doc/release_new_version
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@ -199,27 +199,30 @@ to:parallel@gnu.org, bug-parallel@gnu.org
stable-bcc: Jesse Alama <jessealama@fastmail.fm>
Subject: GNU Parallel 20171022 ('Peter Madsen/Catalonia/Las Vegas') released <<[stable]>>
Subject: GNU Parallel 20171022 ('Catalonia') released <<[stable]>>
GNU Parallel 20171022 ('Peter Madsen') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
GNU Parallel 20171022 ('Catalonia') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
<<No new functionality was introduced so this is a good candidate for a stable release.>>
Haiku of the month:
<<>>
--ole-tange
Cores should never sit
idle - you have work to do!
Use GNU Parallel.
-- Ole Tange
New in this release:
*
https://www.turing.ac.uk/events/masterclass-cluster-computing/
* Validating half a million TIFF files. Part Two. https://www.dpoc.ac.uk/2017/08/17/validating-half-a-million-tiff-files-part-two/
https://openwetware.org/wiki/Butlin:Unix_for_Bioinformatics_-_advanced_tutorial
* Turing data science class: Cluster computing https://www.turing.ac.uk/events/masterclass-cluster-computing/
https://veer66.wordpress.com/2017/09/02/use-multi-core/
* Butlin:Unix for Bioinformatics - advanced tutorial https://openwetware.org/wiki/Butlin:Unix_for_Bioinformatics_-_advanced_tutorial
https://gist.github.com/drmalex07/de8ff1379a560f6d84a0d863e60ae378
* พยายามใช้ CPU ให้ครบทุก CORE https://veer66.wordpress.com/2017/09/02/use-multi-core/
* Examples on using GNU Parallel https://gist.github.com/drmalex07/de8ff1379a560f6d84a0d863e60ae378
<<Citation not OK: BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing https://www.nature.com/articles/s41598-017-01703-6>>

10
packager/obs/home:tange/parallel/.osc/_files
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@ -1,6 +1,6 @@
<directory name="parallel" rev="209" srcmd5="8fab105254f47a893b92e8e198387499" vrev="1">
<entry md5="c4d3446284a6268bc1a0d342e5f42cde" mtime="1506035470" name="parallel-20170922.tar.bz2" size="1633997" />
<entry md5="9c8b18adabc23f0d76a25b46248daee4" mtime="1506035470" name="parallel.spec" size="4482" />
<entry md5="bf74d68c873b1d21c143a002b341b5b0" mtime="1506035471" name="parallel_20170922.dsc" size="556" />
<entry md5="3e1a471c8f5ed9b11a1ac360b483b307" mtime="1506035471" name="parallel_20170922.tar.gz" size="1839209" />
<directory name="parallel" rev="211" srcmd5="58244bb8926ba4034e5d6b7412f2e88d" vrev="2">
<entry md5="ba6e92a95f4bf45af1f450b727581ded" mtime="1508657698" name="parallel-20171022.tar.bz2" size="1665461" />
<entry md5="d4abff90624453b9434ebfb09be7e90c" mtime="1508657699" name="parallel.spec" size="4482" />
<entry md5="40ca59a0bad881333ac2d3bdb2e6318a" mtime="1508657699" name="parallel_20171022.dsc" size="556" />
<entry md5="59c4cf7d017efd0841f7b49c89e6a3bf" mtime="1508657703" name="parallel_20171022.tar.gz" size="1833707" />
</directory>

2
packager/obs/home:tange/parallel/.osc/parallel.spec
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@ -1,6 +1,6 @@
Summary: Shell tool for executing jobs in parallel
Name: parallel
Version: 20170922
Version: 20171022
Release: 1.2
License: GPL
Group: Productivity/File utilities

2
packager/obs/home:tange/parallel/parallel.spec
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@ -1,6 +1,6 @@
Summary: Shell tool for executing jobs in parallel
Name: parallel
Version: 20170922
Version: 20171022
Release: 1.2
License: GPL
Group: Productivity/File utilities

2
src/niceload
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@ -24,7 +24,7 @@
use strict;
use Getopt::Long;
$Global::progname="niceload";
$Global::version = 20170923;
$Global::version = 20171022;
Getopt::Long::Configure("bundling","require_order");
get_options_from_array(\@ARGV) || die_usage();
if($opt::version) {

2
src/parallel
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@ -1381,7 +1381,7 @@ sub check_invalid_option_combinations {
sub init_globals {
# Defaults:
$Global::version = 20170923;
$Global::version = 20171022;
$Global::progname = 'parallel';
$Global::infinity = 2**31;
$Global::debug = 0;

2
src/sql
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@ -576,7 +576,7 @@ $Global::Initfile && unlink $Global::Initfile;
exit ($err);
sub parse_options {
$Global::version = 20170923;
$Global::version = 20171022;
$Global::progname = 'sql';
# This must be done first as this may exec myself