optional: --results change to '/' breaks the reading results.

configure

@@ -1,13 +1,11 @@
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.68 for parallel 20121122.
+# Generated by GNU Autoconf 2.69 for parallel 20121122.
 #
 # Report bugs to <bug-parallel@gnu.org>.
 #
 #
-# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
+# Copyright (C) 1992-1996, 1998-2012 Free Software Foundation, Inc.
-# 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010 Free Software
-# Foundation, Inc.
 #
 #
 # This configure script is free software; the Free Software Foundation
@@ -136,6 +134,31 @@ export LANGUAGE
 # CDPATH.
 (unset CDPATH) >/dev/null 2>&1 && unset CDPATH
 
+# Use a proper internal environment variable to ensure we don't fall
+  # into an infinite loop, continuously re-executing ourselves.
+  if test x"${_as_can_reexec}" != xno && test "x$CONFIG_SHELL" != x; then
+    _as_can_reexec=no; export _as_can_reexec;
+    # We cannot yet assume a decent shell, so we have to provide a
+# neutralization value for shells without unset; and this also
+# works around shells that cannot unset nonexistent variables.
+# Preserve -v and -x to the replacement shell.
+BASH_ENV=/dev/null
+ENV=/dev/null
+(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV
+case $- in # ((((
+  *v*x* | *x*v* ) as_opts=-vx ;;
+  *v* ) as_opts=-v ;;
+  *x* ) as_opts=-x ;;
+  * ) as_opts= ;;
+esac
+exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"}
+# Admittedly, this is quite paranoid, since all the known shells bail
+# out after a failed `exec'.
+$as_echo "$0: could not re-execute with $CONFIG_SHELL" >&2
+as_fn_exit 255
+  fi
+  # We don't want this to propagate to other subprocesses.
+          { _as_can_reexec=; unset _as_can_reexec;}
 if test "x$CONFIG_SHELL" = x; then
   as_bourne_compatible="if test -n \"\${ZSH_VERSION+set}\" && (emulate sh) >/dev/null 2>&1; then :
   emulate sh
@@ -169,7 +192,8 @@ if ( set x; as_fn_ret_success y && test x = \"\$1\" ); then :
 else
   exitcode=1; echo positional parameters were not saved.
 fi
-test x\$exitcode = x0 || exit 1"
+test x\$exitcode = x0 || exit 1
+test -x / || exit 1"
   as_suggested="  as_lineno_1=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_1a=\$LINENO
   as_lineno_2=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_2a=\$LINENO
   eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" &&
@@ -213,6 +237,7 @@ IFS=$as_save_IFS
 
 
       if test "x$CONFIG_SHELL" != x; then :
+  export CONFIG_SHELL
              # We cannot yet assume a decent shell, so we have to provide a
 # neutralization value for shells without unset; and this also
 # works around shells that cannot unset nonexistent variables.
@@ -220,14 +245,17 @@ IFS=$as_save_IFS
 BASH_ENV=/dev/null
 ENV=/dev/null
 (unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV
-	export CONFIG_SHELL
 case $- in # ((((
   *v*x* | *x*v* ) as_opts=-vx ;;
   *v* ) as_opts=-v ;;
   *x* ) as_opts=-x ;;
   * ) as_opts= ;;
 esac
-	exec "$CONFIG_SHELL" $as_opts "$as_myself" ${1+"$@"}
+exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"}
+# Admittedly, this is quite paranoid, since all the known shells bail
+# out after a failed `exec'.
+$as_echo "$0: could not re-execute with $CONFIG_SHELL" >&2
+exit 255
 fi
 
     if test x$as_have_required = xno; then :
@@ -330,6 +358,14 @@ $as_echo X"$as_dir" |
 
 
 } # as_fn_mkdir_p
+
+# as_fn_executable_p FILE
+# -----------------------
+# Test if FILE is an executable regular file.
+as_fn_executable_p ()
+{
+  test -f "$1" && test -x "$1"
+} # as_fn_executable_p
 # as_fn_append VAR VALUE
 # ----------------------
 # Append the text in VALUE to the end of the definition contained in VAR. Take
@@ -451,6 +487,10 @@ as_cr_alnum=$as_cr_Letters$as_cr_digits
   chmod +x "$as_me.lineno" ||
     { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2; as_fn_exit 1; }
 
+  # If we had to re-execute with $CONFIG_SHELL, we're ensured to have
+  # already done that, so ensure we don't try to do so again and fall
+  # in an infinite loop.  This has already happened in practice.
+  _as_can_reexec=no; export _as_can_reexec
   # Don't try to exec as it changes $[0], causing all sort of problems
   # (the dirname of $[0] is not the place where we might find the
   # original and so on.  Autoconf is especially sensitive to this).
@@ -485,16 +525,16 @@ if (echo >conf$$.file) 2>/dev/null; then
     # ... but there are two gotchas:
     # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
     # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
-    # In both cases, we have to default to `cp -p'.
+    # In both cases, we have to default to `cp -pR'.
     ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
-      as_ln_s='cp -p'
+      as_ln_s='cp -pR'
   elif ln conf$$.file conf$$ 2>/dev/null; then
     as_ln_s=ln
   else
-    as_ln_s='cp -p'
+    as_ln_s='cp -pR'
   fi
 else
-  as_ln_s='cp -p'
+  as_ln_s='cp -pR'
 fi
 rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
 rmdir conf$$.dir 2>/dev/null
@@ -506,28 +546,8 @@ else
   as_mkdir_p=false
 fi
 
-if test -x / >/dev/null 2>&1; then
 as_test_x='test -x'
-else
+as_executable_p=as_fn_executable_p
-  if ls -dL / >/dev/null 2>&1; then
-    as_ls_L_option=L
-  else
-    as_ls_L_option=
-  fi
-  as_test_x='
-    eval sh -c '\''
-      if test -d "$1"; then
-	test -d "$1/.";
-      else
-	case $1 in #(
-	-*)set "./$1";;
-	esac;
-	case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in #((
-	???[sx]*):;;*)false;;esac;fi
-    '\'' sh
-  '
-fi
-as_executable_p=$as_test_x
 
 # Sed expression to map a string onto a valid CPP name.
 as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
@@ -1089,8 +1109,6 @@ target=$target_alias
 if test "x$host_alias" != x; then
   if test "x$build_alias" = x; then
     cross_compiling=maybe
-    $as_echo "$as_me: WARNING: if you wanted to set the --build type, don't use --host.
-    If a cross compiler is detected then cross compile mode will be used" >&2
   elif test "x$build_alias" != "x$host_alias"; then
     cross_compiling=yes
   fi
@@ -1310,9 +1328,9 @@ test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
 parallel configure 20121122
-generated by GNU Autoconf 2.68
+generated by GNU Autoconf 2.69
 
-Copyright (C) 2010 Free Software Foundation, Inc.
+Copyright (C) 2012 Free Software Foundation, Inc.
 This configure script is free software; the Free Software Foundation
 gives unlimited permission to copy, distribute and modify it.
 _ACEOF
@@ -1327,7 +1345,7 @@ This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
 It was created by parallel $as_me 20121122, which was
-generated by GNU Autoconf 2.68.  Invocation command line was
+generated by GNU Autoconf 2.69.  Invocation command line was
 
   $ $0 $@
 
@@ -1742,7 +1760,7 @@ case $as_dir/ in #((
     # by default.
     for ac_prog in ginstall scoinst install; do
       for ac_exec_ext in '' $ac_executable_extensions; do
-	if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; }; then
+	if as_fn_executable_p "$as_dir/$ac_prog$ac_exec_ext"; then
 	  if test $ac_prog = install &&
 	    grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
 	    # AIX install.  It has an incompatible calling convention.
@@ -1911,7 +1929,7 @@ do
   IFS=$as_save_IFS
   test -z "$as_dir" && as_dir=.
     for ac_exec_ext in '' $ac_executable_extensions; do
-  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+  if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
     ac_cv_prog_STRIP="${ac_tool_prefix}strip"
     $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
     break 2
@@ -1951,7 +1969,7 @@ do
   IFS=$as_save_IFS
   test -z "$as_dir" && as_dir=.
     for ac_exec_ext in '' $ac_executable_extensions; do
-  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+  if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
     ac_cv_prog_ac_ct_STRIP="strip"
     $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
     break 2
@@ -2002,7 +2020,7 @@ do
   test -z "$as_dir" && as_dir=.
     for ac_prog in mkdir gmkdir; do
 	 for ac_exec_ext in '' $ac_executable_extensions; do
-	   { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue
+	   as_fn_executable_p "$as_dir/$ac_prog$ac_exec_ext" || continue
 	   case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #(
 	     'mkdir (GNU coreutils) '* | \
 	     'mkdir (coreutils) '* | \
@@ -2055,7 +2073,7 @@ do
   IFS=$as_save_IFS
   test -z "$as_dir" && as_dir=.
     for ac_exec_ext in '' $ac_executable_extensions; do
-  if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+  if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
     ac_cv_prog_AWK="$ac_prog"
     $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
     break 2
@@ -2593,16 +2611,16 @@ if (echo >conf$$.file) 2>/dev/null; then
     # ... but there are two gotchas:
     # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
     # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
-    # In both cases, we have to default to `cp -p'.
+    # In both cases, we have to default to `cp -pR'.
     ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
-      as_ln_s='cp -p'
+      as_ln_s='cp -pR'
   elif ln conf$$.file conf$$ 2>/dev/null; then
     as_ln_s=ln
   else
-    as_ln_s='cp -p'
+    as_ln_s='cp -pR'
   fi
 else
-  as_ln_s='cp -p'
+  as_ln_s='cp -pR'
 fi
 rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
 rmdir conf$$.dir 2>/dev/null
@@ -2662,28 +2680,16 @@ else
   as_mkdir_p=false
 fi
 
-if test -x / >/dev/null 2>&1; then
+
+# as_fn_executable_p FILE
+# -----------------------
+# Test if FILE is an executable regular file.
+as_fn_executable_p ()
+{
+  test -f "$1" && test -x "$1"
+} # as_fn_executable_p
 as_test_x='test -x'
-else
+as_executable_p=as_fn_executable_p
-  if ls -dL / >/dev/null 2>&1; then
-    as_ls_L_option=L
-  else
-    as_ls_L_option=
-  fi
-  as_test_x='
-    eval sh -c '\''
-      if test -d "$1"; then
-	test -d "$1/.";
-      else
-	case $1 in #(
-	-*)set "./$1";;
-	esac;
-	case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in #((
-	???[sx]*):;;*)false;;esac;fi
-    '\'' sh
-  '
-fi
-as_executable_p=$as_test_x
 
 # Sed expression to map a string onto a valid CPP name.
 as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
@@ -2705,7 +2711,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # values after options handling.
 ac_log="
 This file was extended by parallel $as_me 20121122, which was
-generated by GNU Autoconf 2.68.  Invocation command line was
+generated by GNU Autoconf 2.69.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
   CONFIG_HEADERS  = $CONFIG_HEADERS
@@ -2767,10 +2773,10 @@ cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
 parallel config.status 20121122
-configured by $0, generated by GNU Autoconf 2.68,
+configured by $0, generated by GNU Autoconf 2.69,
   with options \\"\$ac_cs_config\\"
 
-Copyright (C) 2010 Free Software Foundation, Inc.
+Copyright (C) 2012 Free Software Foundation, Inc.
 This config.status script is free software; the Free Software Foundation
 gives unlimited permission to copy, distribute and modify it."
 
@@ -2861,7 +2867,7 @@ fi
 _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 if \$ac_cs_recheck; then
-  set X '$SHELL' '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
+  set X $SHELL '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
   shift
   \$as_echo "running CONFIG_SHELL=$SHELL \$*" >&6
   CONFIG_SHELL='$SHELL'

src/Makefile.in

@@ -51,7 +51,7 @@ NORMAL_UNINSTALL = :
 PRE_UNINSTALL = :
 POST_UNINSTALL = :
 subdir = src
-DIST_COMMON = README $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/configure.ac
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \

src/optional/genresults.sh

@@ -2,5 +2,5 @@
 #
 # Generate the result files used to test the query modules.
 
-../parallel --header : --result testresults/foo_ echo {a} {b} ::: a 1 2 ::: b 0.30 0.40
+../parallel --header : --result testresults/foo echo {a} {b} ::: a 1 2 ::: b 0.30 0.40
-../parallel --header : --result testresults/bar_ echo {a} {b} ::: a 5 6 ::: b 0.70 0.80
+../parallel --header : --result testresults/bar echo {a} {b} ::: a 5 6 ::: b 0.70 0.80

src/optional/python/README

@@ -24,6 +24,7 @@ Sample usage:
     Type "help", "copyright", "credits" or "license" for more information.
     >>> import gnuparallel
     >>> help(gnuparallel.load)
+!!! THIS PART IS BROKEN !!!
     >>> my_df = gnuparallel.load('out')
     >>> my_df
       _prefix _stream  arg1   arg2                          resfile