mirror of
https://git.savannah.gnu.org/git/parallel.git
synced 2024-12-22 20:57:53 +00:00
Released as 20170522 ('Macron')
This commit is contained in:
Ole Tange
parent
e06ab693b3
commit
896f789214
82
NEWS
82
NEWS
|
|
@ -1,3 +1,85 @@
|
|||
20170522
|
||||
|
||||
* --timeout can now use s=second,m=minute,h=hour,d=day.
|
||||
|
||||
* --dr is now an alias for --dry-run.
|
||||
|
||||
* Vote for GNU Parallel's community ads on
|
||||
http://meta.unix.stackexchange.com/a/4356/2972
|
||||
http://meta.askubuntu.com/a/16750/22307
|
||||
http://meta.serverfault.com/a/9040/45704
|
||||
|
||||
* GNU Parallel was cited in: Feature Detection in Visual Cortex during
|
||||
Different Functional States
|
||||
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
|
||||
|
||||
* GNU Parallel was cited in: From genotype to phenotype: inferring
|
||||
relationships between microbial traits and genomic components
|
||||
https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf
|
||||
|
||||
* GNU Parallel was cited in: Designing fecal microbiota transplant
|
||||
trials that account for differences in donor stool efficacy
|
||||
http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf
|
||||
|
||||
* GNU Parallel was cited in: Assessing the predictability of
|
||||
anharmonic vibrational modes at the example of hydroxyl groups - ad
|
||||
hoc construction of localised modes and the influence of structural
|
||||
solute–solvent motifs
|
||||
http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
|
||||
|
||||
* GNU Parallel was cited in: Mapping Environmental Influences on
|
||||
Utility Fire Threat
|
||||
ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
|
||||
|
||||
* GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose
|
||||
Glass Transition in One Dimension
|
||||
https://arxiv.org/pdf/1704.02257.pdf
|
||||
|
||||
* GNU Parallel was cited in: Online Automatic Post-editing for MT in a
|
||||
Multi-Domain Translation Environment
|
||||
https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
|
||||
|
||||
* GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS
|
||||
moderate-resolution reflective solar bands against MODIS Aqua over
|
||||
dark water scenes
|
||||
http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
|
||||
|
||||
* GNU Parallel was cited in: Scattering Networks: Efficient 2D
|
||||
Implementation And Application To Melanoma Classification
|
||||
http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
|
||||
|
||||
* GNU Parallel was cited in: Genome-scale detection of positive
|
||||
selection in 9 primates predicts human-virus evolutionary conflicts
|
||||
http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
|
||||
|
||||
* GNU Parallel is used in: Creates a speech dataset for deep learning
|
||||
https://github.com/jupiter126/Create_Speech_Dataset
|
||||
|
||||
* GNU Parallel is used in: Parse and process the demixing secrets
|
||||
dataset (DSD100) https://github.com/faroit/dsdtools
|
||||
|
||||
* First glance at the gnu parallel utility
|
||||
https://ibiscybernetics.com/blog/2017-04-05.html
|
||||
|
||||
* Installing parallel from source
|
||||
https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/
|
||||
|
||||
* How to run command or code in parallel in bash shell under Linux or
|
||||
Unix
|
||||
https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
|
||||
|
||||
* Parallel Serial Jobs Using GNU Parallel
|
||||
http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
|
||||
|
||||
* GNU Parallel or How to list millions of S3 objects
|
||||
https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
|
||||
|
||||
* Which Is the Best Tool for Copying a Large Directory Tree Locally?
|
||||
http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
|
||||
|
||||
* Bug fixes and man page updates.
|
||||
|
||||
|
||||
20170422
|
||||
|
||||
* --halt supports done in addition to success and fail.
|
||||
|
|
|
|||
12
README
12
README
|
|
@ -44,9 +44,9 @@ document.
|
|||
|
||||
Full installation of GNU Parallel is as simple as:
|
||||
|
||||
wget http://ftpmirror.gnu.org/parallel/parallel-20170422.tar.bz2
|
||||
bzip2 -dc parallel-20170422.tar.bz2 | tar xvf -
|
||||
cd parallel-20170422
|
||||
wget http://ftpmirror.gnu.org/parallel/parallel-20170522.tar.bz2
|
||||
bzip2 -dc parallel-20170522.tar.bz2 | tar xvf -
|
||||
cd parallel-20170522
|
||||
./configure && make && sudo make install
|
||||
|
||||
|
||||
|
|
@ -55,9 +55,9 @@ Full installation of GNU Parallel is as simple as:
|
|||
If you are not root you can add ~/bin to your path and install in
|
||||
~/bin and ~/share:
|
||||
|
||||
wget http://ftpmirror.gnu.org/parallel/parallel-20170422.tar.bz2
|
||||
bzip2 -dc parallel-20170422.tar.bz2 | tar xvf -
|
||||
cd parallel-20170422
|
||||
wget http://ftpmirror.gnu.org/parallel/parallel-20170522.tar.bz2
|
||||
bzip2 -dc parallel-20170522.tar.bz2 | tar xvf -
|
||||
cd parallel-20170522
|
||||
./configure --prefix=$HOME && make && make install
|
||||
|
||||
Or if your system lacks 'make' you can simply copy src/parallel
|
||||
|
|
|
|||
20
configure
vendored
20
configure
vendored
|
|
@ -1,6 +1,6 @@
|
|||
#! /bin/sh
|
||||
# Guess values for system-dependent variables and create Makefiles.
|
||||
# Generated by GNU Autoconf 2.69 for parallel 20170422.
|
||||
# Generated by GNU Autoconf 2.69 for parallel 20170522.
|
||||
#
|
||||
# Report bugs to <bug-parallel@gnu.org>.
|
||||
#
|
||||
|
|
@ -579,8 +579,8 @@ MAKEFLAGS=
|
|||
# Identity of this package.
|
||||
PACKAGE_NAME='parallel'
|
||||
PACKAGE_TARNAME='parallel'
|
||||
PACKAGE_VERSION='20170422'
|
||||
PACKAGE_STRING='parallel 20170422'
|
||||
PACKAGE_VERSION='20170522'
|
||||
PACKAGE_STRING='parallel 20170522'
|
||||
PACKAGE_BUGREPORT='bug-parallel@gnu.org'
|
||||
PACKAGE_URL=''
|
||||
|
||||
|
|
@ -1214,7 +1214,7 @@ if test "$ac_init_help" = "long"; then
|
|||
# Omit some internal or obsolete options to make the list less imposing.
|
||||
# This message is too long to be a string in the A/UX 3.1 sh.
|
||||
cat <<_ACEOF
|
||||
\`configure' configures parallel 20170422 to adapt to many kinds of systems.
|
||||
\`configure' configures parallel 20170522 to adapt to many kinds of systems.
|
||||
|
||||
Usage: $0 [OPTION]... [VAR=VALUE]...
|
||||
|
||||
|
|
@ -1281,7 +1281,7 @@ fi
|
|||
|
||||
if test -n "$ac_init_help"; then
|
||||
case $ac_init_help in
|
||||
short | recursive ) echo "Configuration of parallel 20170422:";;
|
||||
short | recursive ) echo "Configuration of parallel 20170522:";;
|
||||
esac
|
||||
cat <<\_ACEOF
|
||||
|
||||
|
|
@ -1357,7 +1357,7 @@ fi
|
|||
test -n "$ac_init_help" && exit $ac_status
|
||||
if $ac_init_version; then
|
||||
cat <<\_ACEOF
|
||||
parallel configure 20170422
|
||||
parallel configure 20170522
|
||||
generated by GNU Autoconf 2.69
|
||||
|
||||
Copyright (C) 2012 Free Software Foundation, Inc.
|
||||
|
|
@ -1374,7 +1374,7 @@ cat >config.log <<_ACEOF
|
|||
This file contains any messages produced by compilers while
|
||||
running configure, to aid debugging if configure makes a mistake.
|
||||
|
||||
It was created by parallel $as_me 20170422, which was
|
||||
It was created by parallel $as_me 20170522, which was
|
||||
generated by GNU Autoconf 2.69. Invocation command line was
|
||||
|
||||
$ $0 $@
|
||||
|
|
@ -2237,7 +2237,7 @@ fi
|
|||
|
||||
# Define the identity of the package.
|
||||
PACKAGE='parallel'
|
||||
VERSION='20170422'
|
||||
VERSION='20170522'
|
||||
|
||||
|
||||
cat >>confdefs.h <<_ACEOF
|
||||
|
|
@ -2880,7 +2880,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
|
|||
# report actual input values of CONFIG_FILES etc. instead of their
|
||||
# values after options handling.
|
||||
ac_log="
|
||||
This file was extended by parallel $as_me 20170422, which was
|
||||
This file was extended by parallel $as_me 20170522, which was
|
||||
generated by GNU Autoconf 2.69. Invocation command line was
|
||||
|
||||
CONFIG_FILES = $CONFIG_FILES
|
||||
|
|
@ -2942,7 +2942,7 @@ _ACEOF
|
|||
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
|
||||
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
|
||||
ac_cs_version="\\
|
||||
parallel config.status 20170422
|
||||
parallel config.status 20170522
|
||||
configured by $0, generated by GNU Autoconf 2.69,
|
||||
with options \\"\$ac_cs_config\\"
|
||||
|
||||
|
|
|
|||
|
|
@ -1,4 +1,4 @@
|
|||
AC_INIT([parallel], [20170422], [bug-parallel@gnu.org])
|
||||
AC_INIT([parallel], [20170522], [bug-parallel@gnu.org])
|
||||
AM_INIT_AUTOMAKE([-Wall -Werror foreign])
|
||||
AC_CONFIG_HEADERS([config.h])
|
||||
AC_CONFIG_FILES([
|
||||
|
|
|
|||
|
|
@ -196,100 +196,106 @@ file:///home/tange/privat/parallel/doc/release_new_version
|
|||
from:tange@gnu.org
|
||||
to:parallel@gnu.org, bug-parallel@gnu.org
|
||||
|
||||
Subject: GNU Parallel 20170522 ('Macron') released <<[stable]>>
|
||||
Subject: GNU Parallel 20170522 ('Macron') released [stable]
|
||||
|
||||
GNU Parallel 20170522 ('Macron') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
|
||||
GNU Parallel 20170522 ('Macron') [stable] has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
|
||||
|
||||
<<No new functionality was introduced so this is a good candidate for a stable release.>>
|
||||
Very little new functionality was introduced so this is a good candidate for a stable release.>>
|
||||
|
||||
Haiku of the month:
|
||||
|
||||
<<>>
|
||||
-- Ole Tange
|
||||
Always test your script
|
||||
using a --dry-run
|
||||
or --dr
|
||||
-- Ole Tange
|
||||
|
||||
New in this release:
|
||||
|
||||
* Vote for GNU Parallel's community ads on
|
||||
http://meta.unix.stackexchange.com/a/4356/2972
|
||||
http://meta.askubuntu.com/a/16750/22307
|
||||
http://meta.serverfault.com/a/9040/45704
|
||||
* --timeout can now use s=second,m=minute,h=hour,d=day.
|
||||
|
||||
http://journal.frontiersin.org/article/10.3389/fncom.2017.00021/full#B18
|
||||
* --dr is now an alias for --dry-run.
|
||||
|
||||
https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
|
||||
* Vote for GNU Parallel's community ads on http://meta.unix.stackexchange.com/a/4356/2972 http://meta.askubuntu.com/a/16750/22307 http://meta.serverfault.com/a/9040/45704
|
||||
|
||||
https://github.com/jupiter126/Create_Speech_Dataset
|
||||
* GNU Parallel was cited in: Feature Detection in Visual Cortex during Different Functional States https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
|
||||
|
||||
http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
|
||||
* GNU Parallel was cited in: From genotype to phenotype: inferring relationships between microbial traits and genomic components https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf
|
||||
|
||||
http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
|
||||
* GNU Parallel was cited in: Designing fecal microbiota transplant trials that account for differences in donor stool efficacy http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf
|
||||
|
||||
https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
|
||||
* GNU Parallel was cited in: Assessing the predictability of anharmonic vibrational modes at the example of hydroxyl groups - ad hoc construction of localised modes and the influence of structural solute–solvent motifs http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
|
||||
|
||||
http://amedee.me/gnu-parallel-is-my-new-toaster/index.html
|
||||
* GNU Parallel was cited in: Mapping Environmental Influences on Utility Fire Threat ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
|
||||
|
||||
http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
|
||||
* GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose Glass Transition in One Dimension https://arxiv.org/pdf/1704.02257.pdf
|
||||
|
||||
https://github.com/faroit/dsdtools
|
||||
* GNU Parallel was cited in: Online Automatic Post-editing for MT in a Multi-Domain Translation Environment https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
|
||||
|
||||
ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
|
||||
* GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS moderate-resolution reflective solar bands against MODIS Aqua over dark water scenes http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
|
||||
|
||||
https://dzone.com/articles/batch-convert-images-from-png-to-jpeg
|
||||
* GNU Parallel was cited in: Scattering Networks: Efficient 2D Implementation And Application To Melanoma Classification http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
|
||||
|
||||
https://arxiv.org/pdf/1704.02257.pdf
|
||||
* GNU Parallel was cited in: Genome-scale detection of positive selection in 9 primates predicts human-virus evolutionary conflicts http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
|
||||
|
||||
http://www.sciencedirect.com/science/article/pii/S0044848616312194
|
||||
* GNU Parallel is used in: Creates a speech dataset for deep learning https://github.com/jupiter126/Create_Speech_Dataset
|
||||
|
||||
https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
|
||||
* GNU Parallel is used in: Parse and process the demixing secrets dataset (DSD100) https://github.com/faroit/dsdtools
|
||||
|
||||
http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
|
||||
* First glance at the gnu parallel utility https://ibiscybernetics.com/blog/2017-04-05.html
|
||||
|
||||
http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
|
||||
* Installing parallel from source https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/
|
||||
|
||||
http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
|
||||
* How to run command or code in parallel in bash shell under Linux or Unix https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
|
||||
|
||||
http://www.nature.com/nprot/journal/v12/n5/full/nprot.2017.022.html?WT.feed_name=subjects_biotechnology
|
||||
* Parallel Serial Jobs Using GNU Parallel http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
|
||||
|
||||
https://128.84.21.199/pdf/1704.08997.pdf
|
||||
* GNU Parallel or How to list millions of S3 objects https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
|
||||
|
||||
* Which Is the Best Tool for Copying a Large Directory Tree Locally? http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
|
||||
|
||||
<<Down https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y>>
|
||||
|
||||
<<Down http://www.nature.com/nprot/journal/v12/n5/full/nprot.2017.022.html?WT.feed_name=subjects_biotechnology>>
|
||||
|
||||
<<Citation not ok: https://arxiv.org/pdf/1704.08997.pdf>>
|
||||
|
||||
<<Probably http://www.sciencedirect.com/science/article/pii/S0044848616312194>>
|
||||
|
||||
* <<Citation needed: https://sdstrowes.co.uk/publications/sdstrowes-rdns-aaaa.pdf>>
|
||||
<<Citation needed: https://sdstrowes.co.uk/publications/sdstrowes-rdns-aaaa.pdf>>
|
||||
|
||||
* <<Citation not ok: https://www.nature.com/articles/s41598-017-01703-6>>
|
||||
<<Citation not ok: https://www.nature.com/articles/s41598-017-01703-6>>
|
||||
|
||||
* <<Possibly http://link.springer.com/chapter/10.1007%2F978-3-319-22053-6_46>>
|
||||
<<Possibly http://link.springer.com/chapter/10.1007%2F978-3-319-22053-6_46>>
|
||||
|
||||
* <<Possibly http://link.springer.com/article/10.1007/s12021-015-9290-5>>
|
||||
<<Possibly http://link.springer.com/article/10.1007/s12021-015-9290-5>>
|
||||
|
||||
* <<Possibly http://link.springer.com/protocol/10.1007/978-1-4939-3578-9_14>>
|
||||
<<Possibly http://link.springer.com/protocol/10.1007/978-1-4939-3578-9_14>>
|
||||
|
||||
* << kontakt GNU Parallel was used (unfortunately without citation) in: Instrumentation and Trace Analysis for Ad-hoc Python Workflows in Cloud Environments http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7214035>>
|
||||
<< kontakt GNU Parallel was used (unfortunately without citation) in: Instrumentation and Trace Analysis for Ad-hoc Python Workflows in Cloud Environments http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7214035>>
|
||||
|
||||
* <<Har angiveligt submittet ny version - afventer opdatering>> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345
|
||||
<<Har angiveligt submittet ny version - afventer opdatering>> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345
|
||||
|
||||
* <<Afventer updateret publisering>> GNU Parallel was used in: Large Scale Author Name Disambiguation in Digital Libraries http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7004487&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7004487
|
||||
<<Afventer updateret publisering>> GNU Parallel was used in: Large Scale Author Name Disambiguation in Digital Libraries http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7004487&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7004487
|
||||
|
||||
* <<kontaktet 2015-06-22 Afventer svar fra journal>> GNU Parallel was used (unfortunately with wrong citation) in: TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics http://vruehle.de/publications/2015c.pdf
|
||||
<<kontaktet 2015-06-22 Afventer svar fra journal>> GNU Parallel was used (unfortunately with wrong citation) in: TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics http://vruehle.de/publications/2015c.pdf
|
||||
http://www.researchgate.net/profile/Christoph_Junghans/publication/276178326_TADSim_Discrete_Event-Based_Performance_Prediction_for_Temperature-Accelerated_Dynamics/links/55562b6708ae980ca60c8369.pdf
|
||||
|
||||
* << Update forventet juni Rachel har lige svaret >> GNU Parallel was used in: SISRS: Site Identification from Short Read Sequences https://github.com/rachelss/SISRS/
|
||||
<< Update forventet juni Rachel har lige svaret >> GNU Parallel was used in: SISRS: Site Identification from Short Read Sequences https://github.com/rachelss/SISRS/
|
||||
|
||||
* <<Citation needed: A Cache- and Memory-Aware Mapping Algorithm
|
||||
<<Citation needed: A Cache- and Memory-Aware Mapping Algorithm
|
||||
for Big Data Applications https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7323015>>
|
||||
|
||||
* <<Citation needed: Introspecting for RSA Key Material to Assist Intrusion Detection http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=7331177&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7331177>>
|
||||
<<Citation needed: Introspecting for RSA Key Material to Assist Intrusion Detection http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=7331177&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7331177>>
|
||||
|
||||
* <<Citation needed: 3D-GNOME: an integrated web service for structural modeling of the 3D genome http://nar.oxfordjournals.org/content/early/2016/05/16/nar.gkw437.full.pdf+html>>
|
||||
<<Citation needed: 3D-GNOME: an integrated web service for structural modeling of the 3D genome http://nar.oxfordjournals.org/content/early/2016/05/16/nar.gkw437.full.pdf+html>>
|
||||
|
||||
* <<link No citation: Next-generation TCP for ns-3 simulator http://www.sciencedirect.com/science/article/pii/S1569190X15300939>>
|
||||
<<link No citation: Next-generation TCP for ns-3 simulator http://www.sciencedirect.com/science/article/pii/S1569190X15300939>>
|
||||
|
||||
* <<link No citation: Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1159-6#Bib1>>
|
||||
<<link No citation: Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1159-6#Bib1>>
|
||||
|
||||
* <<No citation: Argumentation Models for Cyber Attribution http://arxiv.org/pdf/1607.02171.pdf>>
|
||||
<<No citation: Argumentation Models for Cyber Attribution http://arxiv.org/pdf/1607.02171.pdf>>
|
||||
|
||||
* <<Possible: http://link.springer.com/article/10.1007/s12021-015-9290-5 http://link.springer.com/protocol/10.1007/978-1-4939-3578-9_14>>
|
||||
<<Possible: http://link.springer.com/article/10.1007/s12021-015-9290-5 http://link.springer.com/protocol/10.1007/978-1-4939-3578-9_14>>
|
||||
|
||||
* Bug fixes and man page updates.
|
||||
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
<directory name="parallel" rev="202" srcmd5="fda429cef02d9586acbd456694e0fe73" vrev="2">
|
||||
<entry md5="86a0368be2f9ed06578c0e7802eda47e" mtime="1492895884" name="parallel-20170422.tar.bz2" size="1543933" />
|
||||
<entry md5="84c26447ed56c65df3bb936de0549bac" mtime="1492895885" name="parallel.spec" size="4483" />
|
||||
<entry md5="4b675733211ff4c1d16a1966b025e9c6" mtime="1492895885" name="parallel_20170422.dsc" size="556" />
|
||||
<entry md5="2955c6e4e7e6ef8bbcfe3cfd018a6d6d" mtime="1492895885" name="parallel_20170422.tar.gz" size="1725824" />
|
||||
<directory name="parallel" rev="204" srcmd5="539c3279f505e09b125a83024496e6b2" vrev="2">
|
||||
<entry md5="8b165d9992ba7fe7586ce235a01fcf35" mtime="1495393172" name="parallel-20170522.tar.bz2" size="1564440" />
|
||||
<entry md5="c889f8f0f1d6e0886e13d65289c8662f" mtime="1495393172" name="parallel.spec" size="4482" />
|
||||
<entry md5="b52694b459b4b1d1359c1f32db7565e2" mtime="1495393172" name="parallel_20170522.dsc" size="556" />
|
||||
<entry md5="a007bf76a1cc36ef10041da03edcb535" mtime="1495393173" name="parallel_20170522.tar.gz" size="1748503" />
|
||||
</directory>
|
||||
|
|
|
|||
|
|
@ -1,7 +1,6 @@
|
|||
|
||||
Summary: Shell tool for executing jobs in parallel
|
||||
Name: parallel
|
||||
Version: 20170422
|
||||
Version: 20170522
|
||||
Release: 1.2
|
||||
License: GPL
|
||||
Group: Productivity/File utilities
|
||||
|
|
|
|||
|
|
@ -1,7 +1,6 @@
|
|||
|
||||
Summary: Shell tool for executing jobs in parallel
|
||||
Name: parallel
|
||||
Version: 20170422
|
||||
Version: 20170522
|
||||
Release: 1.2
|
||||
License: GPL
|
||||
Group: Productivity/File utilities
|
||||
|
|
|
|||
|
|
@ -14,7 +14,7 @@ man_MANS = parallel.1 env_parallel.1 sem.1 sql.1 niceload.1 \
|
|||
parcat.1 parset.1
|
||||
doc_DATA = parallel.html env_parallel.html sem.html sql.html niceload.html \
|
||||
parallel_tutorial.html parallel_design.html parallel_alternatives.html \
|
||||
parcat.html \
|
||||
parcat.html parset.html \
|
||||
parallel.texi env_parallel.texi sem.texi sql.texi niceload.texi \
|
||||
parallel_tutorial.texi parallel_design.texi parallel_alternatives.texi \
|
||||
parcat.texi parset.texi \
|
||||
|
|
@ -142,8 +142,8 @@ niceload.html: niceload.pod sql.html
|
|||
rm -f $(srcdir)/pod2htm*
|
||||
|
||||
# Depending on niceload.html to avoid stupid pod2html race condition
|
||||
parcat.html: parcat niceload.html
|
||||
pod2html --title "GNU parcat" $(srcdir)/parcat > $(srcdir)/parcat.htmln \
|
||||
parcat.html: parcat.pod niceload.html
|
||||
pod2html --title "GNU parcat" $(srcdir)/parcat.pod > $(srcdir)/parcat.htmln \
|
||||
&& mv $(srcdir)/parcat.htmln $(srcdir)/parcat.html \
|
||||
|| echo "Warning: pod2html not found. Using old parcat.html"
|
||||
rm -f $(srcdir)/pod2htm*
|
||||
|
|
@ -187,8 +187,8 @@ niceload.texi: niceload.pod
|
|||
pod2texi --output=$(srcdir)/niceload.texi $(srcdir)/niceload.pod \
|
||||
|| echo "Warning: pod2texi not found. Using old niceload.texi"
|
||||
|
||||
parcat.texi: parcat
|
||||
pod2texi --output=$(srcdir)/parcat.texi $(srcdir)/parcat \
|
||||
parcat.texi: parcat.pod
|
||||
pod2texi --output=$(srcdir)/parcat.texi $(srcdir)/parcat.pod \
|
||||
|| echo "Warning: pod2texi not found. Using old parcat.texi"
|
||||
|
||||
parset.texi: parset.pod
|
||||
|
|
@ -227,8 +227,8 @@ niceload.pdf: niceload.pod
|
|||
pod2pdf --output-file $(srcdir)/niceload.pdf $(srcdir)/niceload.pod --title "GNU niceload" \
|
||||
|| echo "Warning: pod2pdf not found. Using old niceload.pdf"
|
||||
|
||||
parcat.pdf: parcat
|
||||
pod2pdf --output-file $(srcdir)/parcat.pdf $(srcdir)/parcat --title "GNU parcat" \
|
||||
parcat.pdf: parcat.pod
|
||||
pod2pdf --output-file $(srcdir)/parcat.pdf $(srcdir)/parcat.pod --title "GNU parcat" \
|
||||
|| echo "Warning: pod2pdf not found. Using old parcat.pdf"
|
||||
|
||||
parset.pdf: parset.pod
|
||||
|
|
|
|||
|
|
@ -241,7 +241,7 @@ bin_SCRIPTS = parallel sql niceload parcat env_parallel \
|
|||
|
||||
@DOCUMENTATION_TRUE@doc_DATA = parallel.html env_parallel.html sem.html sql.html niceload.html \
|
||||
@DOCUMENTATION_TRUE@ parallel_tutorial.html parallel_design.html parallel_alternatives.html \
|
||||
@DOCUMENTATION_TRUE@ parcat.html \
|
||||
@DOCUMENTATION_TRUE@ parcat.html parset.html \
|
||||
@DOCUMENTATION_TRUE@ parallel.texi env_parallel.texi sem.texi sql.texi niceload.texi \
|
||||
@DOCUMENTATION_TRUE@ parallel_tutorial.texi parallel_design.texi parallel_alternatives.texi \
|
||||
@DOCUMENTATION_TRUE@ parcat.texi parset.texi \
|
||||
|
|
@ -730,8 +730,8 @@ niceload.html: niceload.pod sql.html
|
|||
rm -f $(srcdir)/pod2htm*
|
||||
|
||||
# Depending on niceload.html to avoid stupid pod2html race condition
|
||||
parcat.html: parcat niceload.html
|
||||
pod2html --title "GNU parcat" $(srcdir)/parcat > $(srcdir)/parcat.htmln \
|
||||
parcat.html: parcat.pod niceload.html
|
||||
pod2html --title "GNU parcat" $(srcdir)/parcat.pod > $(srcdir)/parcat.htmln \
|
||||
&& mv $(srcdir)/parcat.htmln $(srcdir)/parcat.html \
|
||||
|| echo "Warning: pod2html not found. Using old parcat.html"
|
||||
rm -f $(srcdir)/pod2htm*
|
||||
|
|
@ -775,8 +775,8 @@ niceload.texi: niceload.pod
|
|||
pod2texi --output=$(srcdir)/niceload.texi $(srcdir)/niceload.pod \
|
||||
|| echo "Warning: pod2texi not found. Using old niceload.texi"
|
||||
|
||||
parcat.texi: parcat
|
||||
pod2texi --output=$(srcdir)/parcat.texi $(srcdir)/parcat \
|
||||
parcat.texi: parcat.pod
|
||||
pod2texi --output=$(srcdir)/parcat.texi $(srcdir)/parcat.pod \
|
||||
|| echo "Warning: pod2texi not found. Using old parcat.texi"
|
||||
|
||||
parset.texi: parset.pod
|
||||
|
|
@ -815,8 +815,8 @@ niceload.pdf: niceload.pod
|
|||
pod2pdf --output-file $(srcdir)/niceload.pdf $(srcdir)/niceload.pod --title "GNU niceload" \
|
||||
|| echo "Warning: pod2pdf not found. Using old niceload.pdf"
|
||||
|
||||
parcat.pdf: parcat
|
||||
pod2pdf --output-file $(srcdir)/parcat.pdf $(srcdir)/parcat --title "GNU parcat" \
|
||||
parcat.pdf: parcat.pod
|
||||
pod2pdf --output-file $(srcdir)/parcat.pdf $(srcdir)/parcat.pod --title "GNU parcat" \
|
||||
|| echo "Warning: pod2pdf not found. Using old parcat.pdf"
|
||||
|
||||
parset.pdf: parset.pod
|
||||
|
|
|
|||
|
|
@ -24,7 +24,7 @@
|
|||
use strict;
|
||||
use Getopt::Long;
|
||||
$Global::progname="niceload";
|
||||
$Global::version = 20170423;
|
||||
$Global::version = 20170522;
|
||||
Getopt::Long::Configure("bundling","require_order");
|
||||
get_options_from_array(\@ARGV) || die_usage();
|
||||
if($opt::version) {
|
||||
|
|
|
|||
|
|
@ -13,7 +13,6 @@ There are a lot programs with some of the functionality of GNU
|
|||
B<parallel>. GNU B<parallel> strives to include the best of the
|
||||
functionality without sacrificing ease of use.
|
||||
|
||||
|
||||
=head2 SUMMARY TABLE
|
||||
|
||||
The following features are in some of the comparable tools:
|
||||
|
|
@ -1043,7 +1042,7 @@ The failed commands can be resumed with:
|
|||
|
||||
=head2 DIFFERENCES BETWEEN machma AND GNU Parallel
|
||||
|
||||
Todo. Requires Go > 1.6.
|
||||
Todo. Requires Go >= 1.7.
|
||||
|
||||
|
||||
=head2 DIFFERENCES BETWEEN ClusterSSH AND GNU Parallel
|
||||
|
|
@ -1066,6 +1065,124 @@ GNU B<parallel> can be used as a poor-man's version of ClusterSSH:
|
|||
B<parallel --nonall -S server-a,server-b do_stuff foo bar>
|
||||
|
||||
|
||||
=head1 TESTING OTHER TOOLS
|
||||
|
||||
There are certain issues that are very common on parallelizing
|
||||
tools. Here are a few stress tests. Be warned: If the tool is badly
|
||||
coded it may overload you machine.
|
||||
|
||||
=head2 Output mixes
|
||||
|
||||
Output from 2 jobs should not mix.
|
||||
|
||||
#!/bin/bash
|
||||
|
||||
paralleltool=parallel
|
||||
|
||||
cat <<-EOF > mycommand
|
||||
#!/bin/bash
|
||||
|
||||
# If 'a', 'b' and 'c' mix: Very bad
|
||||
perl -e 'print "a"x3000_000," "'
|
||||
perl -e 'print "b"x3000_000," "'
|
||||
perl -e 'print "c"x3000_000," "'
|
||||
echo
|
||||
EOF
|
||||
chmod +x mycommand
|
||||
|
||||
# Run 30 jobs in parallel
|
||||
seq 30 | $paralleltool -j0 ./mycommand | tr -s abc
|
||||
|
||||
# 'a b c' should always stay together
|
||||
# and there should only be a single line per job
|
||||
|
||||
=head2 Speed depends on number of words
|
||||
|
||||
Some tools become very slow if output lines have many words.
|
||||
|
||||
#!/bin/bash
|
||||
|
||||
paralleltool=parallel
|
||||
|
||||
cat <<-EOF > mycommand
|
||||
#!/bin/bash
|
||||
|
||||
# 10 MB of lines with 1000 words
|
||||
yes "`seq 1000`" | head -c 10M
|
||||
EOF
|
||||
chmod +x mycommand
|
||||
|
||||
# Run 30 jobs in parallel
|
||||
seq 30 | time $paralleltool -j0 ./mycommand > /dev/null
|
||||
|
||||
=head2 Output limited by RAM
|
||||
|
||||
Some tools cache output in RAM. This makes them extremely slow if the
|
||||
output is bigger than physical memory and crash if the the output is
|
||||
bigger than the virtual memory.
|
||||
|
||||
#!/bin/bash
|
||||
|
||||
paralleltool=parallel
|
||||
|
||||
cat <<'EOF' > mycommand
|
||||
#!/bin/bash
|
||||
|
||||
# Generate 1 GB output
|
||||
yes "`perl -e 'print \"c\"x30_000'`" | head -c 1G
|
||||
EOF
|
||||
chmod +x mycommand
|
||||
|
||||
# Run 20 jobs in parallel
|
||||
# Adjust 20 to be > physical RAM and < free space on /tmp
|
||||
seq 20 | time $paralleltool -j0 ./mycommand | wc -c
|
||||
|
||||
=head2 Leaving tmp files at unexpected death
|
||||
|
||||
Some tools do not clean up tmp files if they are killed.
|
||||
|
||||
#!/bin/bash
|
||||
|
||||
paralleltool=parallel
|
||||
|
||||
ls /tmp >/tmp/before
|
||||
seq 10 | $paralleltool sleep &
|
||||
pid=$!
|
||||
# Give the tool time to start up
|
||||
sleep 1
|
||||
# Kill it without giving it a chance to cleanup
|
||||
kill -9 $!
|
||||
# Should be empty: No files should be left behind
|
||||
diff <(ls /tmp) /tmp/before
|
||||
|
||||
=head2 Dealing badly with special file names.
|
||||
|
||||
It is not uncommon for users to create files like:
|
||||
|
||||
My brother's 12" records cost $$$.txt
|
||||
|
||||
Some tools break on this.
|
||||
|
||||
#!/bin/bash
|
||||
|
||||
paralleltool=parallel
|
||||
|
||||
touch "My brother's 12\" records cost \$\$\$.txt"
|
||||
ls My*txt | $paralleltool echo
|
||||
|
||||
=head2 Composed commands do not work
|
||||
|
||||
Some tools require you to wrap composed commands into B<bash -c>.
|
||||
|
||||
echo bar | $paralleltool echo foo';' echo {}
|
||||
|
||||
=head2 Only one replacement string allowed
|
||||
|
||||
Some tools can only insert the argument once.
|
||||
|
||||
echo bar | $paralleltool echo {} foo {}
|
||||
|
||||
|
||||
=head1 AUTHOR
|
||||
|
||||
When using GNU B<parallel> for a publication please cite:
|
||||
|
|
|
|||
2
src/sql
2
src/sql
|
|
@ -576,7 +576,7 @@ $Global::Initfile && unlink $Global::Initfile;
|
|||
exit ($err);
|
||||
|
||||
sub parse_options {
|
||||
$Global::version = 20170423;
|
||||
$Global::version = 20170522;
|
||||
$Global::progname = 'sql';
|
||||
|
||||
# This must be done first as this may exec myself
|
||||
|
|
|
|||
|
|
@ -7,6 +7,12 @@ test -d "parallel-00000000" || mkdir "parallel-00000000"
|
|||
(cd src && make top_distdir=../parallel-00000000 distdir=../parallel-00000000/src \
|
||||
am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
|
||||
make[0]: Entering directory '~/privat/parallel/src'
|
||||
pod2html --title "GNU parset" ./parset.pod > ./parset.htmln \
|
||||
&& mv ./parset.htmln ./parset.html \
|
||||
|| echo "Warning: pod2html not found. Using old parset.html"
|
||||
/bin/bash: pod2html: command not found
|
||||
Warning: pod2html not found. Using old parset.html
|
||||
rm -f ./pod2htm*
|
||||
make[0]: Leaving directory '~/privat/parallel/src'
|
||||
test -n "" \
|
||||
|| find "parallel-00000000" -type d ! -perm -755 \
|
||||
|
|
|
|||
Loading…
Reference in a new issue