mirror of
https://git.savannah.gnu.org/git/parallel.git
synced 2024-11-21 13:37:56 +00:00
Fixed bug #59453: PARALLEL_HOME with plus sign causes error.
This commit is contained in:
Ole Tange
parent
e1a62d362d
commit
8df731b9ab
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@ -13,15 +13,24 @@
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# Fixed cpu-speed: 50% spread=0.7-1.5 ms
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# 4-cpu: 30% faster: 9 ms -> 6 ms
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TMP=`pwd`/tmp
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export TMP
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mkdir -p $TMP
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if ! /tmp/bin/parallel-20140722 --version; then
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wget -c ftp://ftp.gnu.org/old-gnu/parallel/p*
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wget -c ftp://ftp.uni-kl.de/pub/gnu/parallel/p*
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parallel 'gpg --auto-key-locate keyserver --keyserver-options auto-key-retrieve {}' ::: *.sig
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parallel --plus 'tar xvf {.} && cd {...} && ./configure --prefix /tmp/{.}-bin && make && make install' ::: *sig
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perl -i -pe 's/qw\(keys/(keys/' parallel*/src/parallel
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mkdir /tmp/bin
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parallel cp {} /tmp/bin/'{=s:/.*::=}' ::: parallel*/src/parallel
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if ! $TMP/bin/parallel-20140722 --version; then
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mkdir -p $TMP/ftp
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(
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cd $TMP/ftp
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# wget -c ftp://ftp.gnu.org/old-gnu/parallel/p*
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wget -c ftp://ftp.uni-kl.de/pub/gnu/parallel/p*
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parallel 'gpg --auto-key-locate keyserver --keyserver-options auto-key-retrieve {}' ::: *.sig
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parallel --plus 'tar xvf {.} && cd {...} && ./configure --prefix '$TMP'/ftp/{.}-bin && make && make install' ::: *sig
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perl -i -pe 's/qw\(keys/(keys/' parallel*/src/parallel
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perl -i -pe 's/defined(\@/(\@/' parallel*/src/parallel
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perl -i -pe 's/defined\s+\@/ \@/' parallel*/src/parallel
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mkdir $TMP/bin
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parallel cp {} $TMP/bin/'{=s:/.*::=}' ::: parallel*/src/parallel
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)
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fi
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measure() {
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@ -35,30 +44,30 @@ measure() {
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MHZ=1700
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# Force cpuspeed at 1.7GHz - seems to give tighter results
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forever 'parallel sudo cpufreq-set -g performance -u '$MHZ'MHz -d '$MHZ'MHz -c{} ::: {0..3};sleep 10' &
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#forever 'parallel sudo cpufreq-set -g performance -u '$MHZ'MHz -d '$MHZ'MHz -c{} ::: {0..3};sleep 10' &
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PATH=/tmp/bin:$PATH
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cd /tmp/bin
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PATH=$TMP/bin:$PATH
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cd $TMP/bin
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ls parallel-* |
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parallel --shuf -j$CORES --joblog ~/tmp/joblog$CORES-$INNER-$OUTER.csv 'seq '$INNER' | {2} true' :::: <(seq $OUTER) -
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parallel --shuf -j$CORES --joblog +$TMP/joblog$CORES-$INNER-$OUTER.csv 'seq '$INNER' | {2} true' :::: <(seq $OUTER) -
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killall forever
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Rscript - <<_
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jl<-read.csv("$HOME/tmp/joblog$CORES-$INNER-$OUTER.csv",sep="\t");
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jl<-read.csv("$TMP/joblog$CORES-$INNER-$OUTER.csv",sep="\t");
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jl\$Command <- as.factor(substr(jl\$Command,
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nchar(as.character(jl\$Command))-23,
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nchar(as.character(jl\$Command))-5))
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pdf("/tmp/boxplot.pdf");
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nchar(as.character(jl\$Command))-12,
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nchar(as.character(jl\$Command))-5));
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pdf("$TMP/boxplot.pdf");
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par(cex.axis=0.5);
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boxplot(JobRuntime/$INNER*1000~Command,data=jl,las=2,outline=F,
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ylab="milliseconds/job",main="GNU Parallel overhead for different versions\n$OUTER trials each running $INNER jobs");
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_
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cp /tmp/boxplot.pdf $HOME/tmp/boxplot-j$CORES-${MHZ}MHz-$OUTER-${INNER}v$VERSION.pdf
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evince /tmp/boxplot.pdf
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cp $TMP/boxplot.pdf $TMP/boxplot-j$CORES-${MHZ}MHz-$OUTER-${INNER}v$VERSION.pdf
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evince $TMP/boxplot.pdf
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}
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#measure 3000 1000 2 1
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measure 30 10 2 1
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measure 300 100 2 1
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measure 3000 1000 2 1
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measure 30 10 50% 1
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measure 300 100 50% 1
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measure 3000 1000 50% 1
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12
doc/haikus
12
doc/haikus
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@ -1,13 +1,13 @@
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Quote of the month:
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Today I'm grateful for GNU parallel, especially with the --colsep and
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--jobs parameters #GiveThanks
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Erin Young @ErinYoun
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I also prefer gnu parallel. Mainly because it makes embarrassingly
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parallel tasks embarrassingly easy to run on the command line.
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-- Vincent D. Warmerdam @fishnets88@twitter
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GNU parallel should be taught in class, it is one of the best tools
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to run grids of experiments
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-- no love deep learning @tetraduzione@twitter
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It's not a data migration party until GNU Parallel is involved...
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involved
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involved
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@ -75,6 +75,10 @@ https://negfeedback.blogspot.com/2020/05/indispensable-command-line-tools.html
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=== Used ===
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GNU parallel should be taught in class, it is one of the best tools
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to run grids of experiments
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-- no love deep learning @tetraduzione@twitter
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I get a weird sense of satisfaction every single time I see the
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lovely logo of #GNU Parallel (plus, what an underrated piece of
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great software!)
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@ -105,9 +105,7 @@ git diff
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# Recheck OBS https://build.opensuse.org/package/show/home:tange/parallel
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export YYYYMMDD=`yyyymmdd`
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export YYYYMMDD=${YYYYMMDD:0:6}22
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TAG=MyTag
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. .last-doitag.txt
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echo "Released as $YYYYMMDD ('$TAG')." | grep MyTag && (STOP;STOP;STOP)
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echo "$TAG" | grep ' ' && (STOP;STOP;STOP)
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echo "Released as $YYYYMMDD ('$TAG')."
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@ -192,9 +190,9 @@ from:tange@gnu.org
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to:parallel@gnu.org, bug-parallel@gnu.org
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stable-bcc: Jesse Alama <jessealama@fastmail.fm>
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Subject: GNU Parallel 20201122 ('Biden') released <<[stable]>>
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Subject: GNU Parallel 20201222 ('Maradona') released <<[stable]>>
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GNU Parallel 20201122 ('Biden') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
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GNU Parallel 20201222 ('') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
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<<No new functionality was introduced so this is a good candidate for a stable release.>>
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@ -208,15 +206,14 @@ Quote of the month:
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New in this release:
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<<>>
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https://www.youtube.com/watch?v=t_v2Otgt87g
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* Bug fixes and man page updates.
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News about GNU Parallel:
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* https://bash-prompt.net/guides/gnu-parallel-multi-server/
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https://aws.amazon.com/blogs/storage/best-practices-for-accelerating-data-migrations-using-aws-snowball-edge/
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@ -2757,7 +2757,7 @@ sub read_options() {
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}
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close $in_fh;
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} else {
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if(grep /^$profile$/, @config_profiles) {
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if(grep /^\Q$profile\E$/, @config_profiles) {
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# config file is not required to exist
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} else {
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::error("$profile not readable.");
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@ -3800,7 +3800,7 @@ way to know for certain is to test and measure.
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=head2 Limiting factor: RAM
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The normal B<grep -f regexs.txt bigfile> works no matter the size of
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The normal B<grep -f regexps.txt bigfile> works no matter the size of
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bigfile, but if regexps.txt is so big it cannot fit into memory, then
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you need to split this.
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@ -3854,13 +3854,13 @@ If you can live with duplicated lines and wrong order, it is faster to do:
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If the CPU is the limiting factor parallelization should be done on
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the regexps:
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cat regexp.txt | parallel --pipe -L1000 --roundrobin --compress \
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cat regexps.txt | parallel --pipe -L1000 --roundrobin --compress \
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grep -f - -n bigfile | \
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sort -un | perl -pe 's/^\d+://'
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The command will start one B<grep> per CPU and read I<bigfile> one
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time per CPU, but as that is done in parallel, all reads except the
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first will be cached in RAM. Depending on the size of I<regexp.txt> it
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first will be cached in RAM. Depending on the size of I<regexps.txt> it
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may be faster to use B<--block 10m> instead of B<-L1000>.
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Some storage systems perform better when reading multiple chunks in
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@ -3868,13 +3868,13 @@ parallel. This is true for some RAID systems and for some network file
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systems. To parallelize the reading of I<bigfile>:
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parallel --pipepart --block 100M -a bigfile -k --compress \
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grep -f regexp.txt
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grep -f regexps.txt
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This will split I<bigfile> into 100MB chunks and run B<grep> on each of
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these chunks. To parallelize both reading of I<bigfile> and I<regexp.txt>
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combine the two using B<--fifo>:
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these chunks. To parallelize both reading of I<bigfile> and I<regexps.txt>
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combine the two using B<--cat>:
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parallel --pipepart --block 100M -a bigfile --fifo cat regexp.txt \
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parallel --pipepart --block 100M -a bigfile --cat cat regexps.txt \
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\| parallel --pipe -L1000 --roundrobin grep -f - {}
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If a line matches multiple regexps, the line may be duplicated.
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@ -850,12 +850,13 @@ be spawned:
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parallel "grep -E 'ls | wc >> c' {} | wc >> c" ::: foo
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parallel "LANG=C grep -E 'ls | wc >> c' {}" ::: foo
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It is impossible to tell the difference between these without parsing
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the string (is the B<|> a pipe in shell or an alternation in a B<grep>
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regexp? Is B<LANG=C> a command in B<csh> or setting a variable in
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B<bash>? Is B<>>> redirection or part of a regexp?).
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It is impossible to tell how B<| wc >>>B< c> should be interpreted
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without parsing the string (is the B<|> a pipe in shell or an
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alternation in a B<grep> regexp? Is B<LANG=C> a command in B<csh> or
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setting a variable in B<bash>? Is B<>>> redirection or part of a
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regexp?).
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On top of this wrapper scripts will often require a shell to be
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On top of this, wrapper scripts will often require a shell to be
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spawned.
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The downside is that you need to quote special shell chars twice:
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@ -851,6 +851,15 @@ par_plus_slot_replacement() {
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parallel -k --plus echo '{slot}=$PARALLEL_JOBSLOT={%}' ::: A B C
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}
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par_PARALLEL_HOME_with_+() {
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echo 'bug #59453: PARALLEL_HOME with plus sign causes error: config not readable'
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tmp=$(mktemp -d)
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export PARALLEL_HOME="$tmp/ space /a+b"
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mkdir -p "$PARALLEL_HOME"
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parallel echo ::: Parallel_home_with+
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rm -rf "$tmp"
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}
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export -f $(compgen -A function | grep par_)
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compgen -A function | grep par_ | LC_ALL=C sort |
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parallel --timeout 1000% -j6 --tag -k --joblog /tmp/jl-`basename $0` '{} 2>&1' |
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@ -624,6 +624,21 @@ par_test_cpu_detection_cpuinfo() {
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YstArr0BOSgXJ4Xmpu4j9PRpQcgRCckdf4fcSFol9GuGecuj5uBxngHakML8
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' | unpack
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}
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cpu15() {
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echo '1-1-1-1 Intel(R) Celeron(R) M (eee900)'
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echo '
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KLUv/QRo5Q0ABp9XIkBrqwCI2LZJIts7o1loU/RrgCM1Bkm4qbLeX6WzKj6uMAFQAE8ARwAL
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JHEgV0hbZFGyfUlxhRq4zDo7PSwsEOTgX8Ao1WnCAxwArpC+BU+AuELIaYsvGVyhh9u3mDvM
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ktMJGRSuA1XhCrVVZGxQn4RcIRm7lUXJAdxIyRVy+qh7W4cZjDtZmUOV1ofD60XGIAiTIrxC
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jbMozzbmbu1cuGx5XSGVkSXEFeoGrlu2294ttv1gcEJoeIJIPGxfGWyxlEiQAYXQw0KHjdim
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06c4zJwl7eT3XO6A14X/5rufaPdlO5g73vsyW+/ZzmjHMY79iY99NXwp5ztrX+FgV/auiy/7
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nfW8Nl/b9T13mOlmuSmpCfVps+B6l9qInNxyptxH4D13eULQrbK1NaE+2KxbSoFBSiADCKLg
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fbGJS5rL2Omcpyxu7rvh1eh3e2cmwr178WNRVMbZSoJ4FJWTKXcnKADAIKuqBxBI54gcFYp3
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xUIMqhrUyHoLjYPwgszI7eGRdSUOFMYQlpP0pOoEAV0WM1zTXUey4OeJUEZtb+UNcgLSAYUj
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iyXJQ3TVfIX50ANedGFbHwEc/JQzJup4YQ==
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' | unpack
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}
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export -f $(compgen -A function | grep ^cpu)
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test_one() {
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@ -809,6 +824,18 @@ par_test_cpu_detection_lscpu() {
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YQqnBNP0ggo=
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' | unpack
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}
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cpu15() {
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echo '1-1-1-1 Intel(R) Celeron(R) M (eee900)'
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echo '
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KLUv/QRohQoANpVBJCDJVgAHS35yk/0LNr7il7y4NiXZTi5J2xh8EMPkH0ICUAugATkAOAA5
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AFDzg//KBxEyshyKJFqSPScHvrD7GRyq62rk2xnH6ldBJBQHNqybEUHnKZJoMR7GO7S16rb9
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LK0GBJfkrAs3+uHAsJHJKw7BdVNajAx8kU1wW0JWvkpugQDkdTq5CcuZ9Cq0yVtntJzZXpc6
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ttWCsJoH7dvil9FXjm/cX6Zf942XV3RiikGCtXiciQQiTWo61iLRADRNY+EhPZR8lG5P1sJD
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appGnczbZqUB6zW9exVt564cI78V+thnfmKZXxkzHRPjH23s3O4WruAE2y8ztjOKvtaOp8tv
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j7I/mB0gQIaMujr8eNMPYIxoDLDgY+WX46hwjTmVzU7HpqEtYHxLTLzqx8jKta+0nIvY4e1q
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oiCpQLqitFXU0Fyo+a4q4SvbmVMCr0burQ==
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' | unpack
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}
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export -f $(compgen -A function | grep ^cpu)
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test_one() {
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@ -847,15 +874,16 @@ par_block_negative_prefix() {
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par_sql_colsep() {
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echo '### SQL should add Vn columns for --colsep'
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parallel -k -C' ' --sqlandworker sqlite3:///%2ftmp%2ffoo/bar echo /{1}/{2}/{3}/{4}/ \
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dburl=sqlite3:///%2ftmp%2fparallel-sql-colsep-$$/bar
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parallel -k -C' ' --sqlandworker $dburl echo /{1}/{2}/{3}/{4}/ \
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::: 'a A' 'b B' 'c C' ::: '1 11' '2 22' '3 33'
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parallel -k -C' ' echo /{1}/{2}/{3}/{4}/ \
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::: 'a A' 'b B' 'c C' ::: '1 11' '2 22' '3 33'
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# TODO this is wrong
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parallel -k -C' ' -N3 --sqlandworker sqlite3:///%2ftmp%2ffoo/bar echo \
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parallel -k -C' ' -N3 --sqlandworker $dburl echo \
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::: 'a A' 'b B' 'c C' ::: '1 11' '2 22' '3 33' '4 44' '5 55' '6 66'
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parallel -k -C' ' -N3 echo \
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::: 'a A' 'b B' 'c C' ::: '1 11' '2 22' '3 33' '4 44' '5 55' '6 66'
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rm /tmp/parallel-sql-colsep-$$
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}
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par_sql_CSV() {
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@ -6,6 +6,8 @@ par_PARALLEL_ENV ### PARALLEL_ENV as file
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par_PARALLEL_ENV OK as file
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par_PARALLEL_ENV ### PARALLEL_ENV as fifo
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par_PARALLEL_ENV OK as fifo
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par_PARALLEL_HOME_with_+ bug #59453: PARALLEL_HOME with plus sign causes error: config not readable
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par_PARALLEL_HOME_with_+ Parallel_home_with+
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par_X_eta_div_zero ### bug #34422: parallel -X --eta crashes with div by zero
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par_X_eta_div_zero Computers / CPU cores / Max jobs to run
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par_X_eta_div_zero 0:local / 0 / 0
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@ -811,6 +811,8 @@ par_test_cpu_detection_cpuinfo 1-2-2-2 AMD Neo N36L Dual-Core Processor
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par_test_cpu_detection_cpuinfo 1 2 2 2
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par_test_cpu_detection_cpuinfo 1-1-1-1 Intel Xeon X5675 (mandriva.p)
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par_test_cpu_detection_cpuinfo 1 1 1 1
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par_test_cpu_detection_cpuinfo 1-1-1-1 Intel(R) Celeron(R) M (eee900)
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par_test_cpu_detection_cpuinfo 1 1 1 1
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par_test_cpu_detection_cpuinfo 1-4-8-4 Core i7-3632QM Acer laptop
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par_test_cpu_detection_cpuinfo 1 4 8 4
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par_test_cpu_detection_cpuinfo 1-2-4-2 Core i5-2410M laptop firewall
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@ -835,6 +837,8 @@ par_test_cpu_detection_lscpu 1-2-2-2 AMD Neo N36L Dual-Core Processor
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par_test_cpu_detection_lscpu 1 2 2 2
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par_test_cpu_detection_lscpu 1-1-1-1 Intel Xeon X5675 (mandriva.p)
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par_test_cpu_detection_lscpu 1 1 1 1
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par_test_cpu_detection_lscpu 1-1-1-1 Intel(R) Celeron(R) M (eee900)
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par_test_cpu_detection_lscpu 1 1 1 1
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par_test_cpu_detection_lscpu 1-4-8-4 Core i7-3632QM Acer laptop
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par_test_cpu_detection_lscpu 1 4 8 4
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par_test_cpu_detection_lscpu 1-2-4-2 Core i5-2410M laptop firewall
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