parallel_cheat.fodt: Initial release (correction).

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Ole Tange 2019-03-04 22:52:15 +01:00
parent b8039a2764
commit 8ee7777ee9
2 changed files with 967 additions and 0 deletions

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@ -220,6 +220,8 @@ Quote of the month:
New in this release:
* GNU Parallel now includes a cheat sheet:
https://calendar.colorado.edu/event/high_throughput_computing_on_rmacc_summit_and_beyond#.XH2NBhB7mV4
https://www.cheatography.com/cpriest/cheat-sheets/gnu-parallel/

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<text:p text:style-name="P15">GNU Para<text:span text:style-name="T18">ll</text:span>el Cheat Sheet</text:p>
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<text:p text:style-name="P6">GNU Parallel is a replacement for <text:span text:style-name="Source_20_Text"><text:span text:style-name="T18">xargs</text:span></text:span>, and <text:span text:style-name="Source_20_Text"><text:span text:style-name="T18">for</text:span></text:span> loops. It can also split a file or a stream into blocks and pass those to commands <text:span text:style-name="T13">running in parallel.</text:span></text:p>
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<text:p text:style-name="P12"><text:span text:style-name="T1">Compress all *.html files in parallel 2 per CPU thread</text:span><text:line-break/><text:span text:style-name="Source_20_Text"><text:span text:style-name="T10">parallel --</text:span></text:span><text:span text:style-name="Source_20_Text"><text:span text:style-name="T11">jobs 200% </text:span></text:span><text:span text:style-name="Source_20_Text"><text:span text:style-name="T10">gzip ::: *.html</text:span></text:span></text:p>
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<text:p text:style-name="P12"><text:span text:style-name="T1">Convert all *.wav to *.mp3 using </text:span><text:span text:style-name="Source_20_Text"><text:span text:style-name="T18">lame</text:span></text:span><text:line-break/><text:span text:style-name="Source_20_Text"><text:span text:style-name="T10">parallel lame {} -o {.}.mp3 ::: *.wav</text:span></text:span></text:p>
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<table:table-row table:style-name="Table8.4">
<table:table-cell table:style-name="Table8.A2" office:value-type="float" office:value="0">
<text:p text:style-name="P12"><text:span text:style-name="T1">Chop bigfile into 1MB blocks and grep for the string foobar</text:span><text:line-break/><text:span text:style-name="Source_20_Text"><text:span text:style-name="T12">cat bigfile | </text:span></text:span><text:span text:style-name="Source_20_Text"><text:span text:style-name="T10">parallel --pipe grep foobar</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
</table:table>
<text:p text:style-name="P2"/>
<table:table table:name="Table9" table:style-name="Table9">
<table:table-column table:style-name="Table9.A"/>
<table:table-row table:style-name="Table9.1">
<table:table-cell table:style-name="Table9.A1" office:value-type="string">
<text:p text:style-name="P13">Input sources</text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table9.2">
<table:table-cell table:style-name="Table9.A2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T4">parallel echo ::: cmd line input source</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table9.3">
<table:table-cell table:style-name="Table9.A2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T4">cat input_from_stdin | parallel echo</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table9.4">
<table:table-cell table:style-name="Table9.A2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T4">parallel echo ::: multiple input ::: source values</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table9.5">
<table:table-cell table:style-name="Table9.A2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T4">parallel -a input_from_file echo</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table9.6">
<table:table-cell table:style-name="Table9.A2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T4">parallel echo :::: input_from_file</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table9.7">
<table:table-cell table:style-name="Table9.A2" office:value-type="string">
<text:p text:style-name="P10"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T4">parallel echo :::: input_from_file ::: and command line</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
</table:table>
<text:p text:style-name="P2"/>
<table:table table:name="Table10" table:style-name="Table10">
<table:table-column table:style-name="Table10.A"/>
<table:table-column table:style-name="Table10.B"/>
<table:table-row table:style-name="Table10.1">
<table:table-cell table:style-name="Table10.A1" office:value-type="string">
<text:p text:style-name="P13">Replacement string</text:p>
</table:table-cell>
<table:table-cell table:style-name="Table10.B1" office:value-type="string">
<text:p text:style-name="P13">Value</text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table10.2">
<table:table-cell table:style-name="Table10.A2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text">{}</text:span></text:p>
</table:table-cell>
<table:table-cell table:style-name="Table10.B2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text">mydir/mysubdir/myfile.myext</text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table10.3">
<table:table-cell table:style-name="Table10.A2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text">{.}</text:span></text:p>
</table:table-cell>
<table:table-cell table:style-name="Table10.B2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text">mydir/mysubdir/myfile</text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table10.4">
<table:table-cell table:style-name="Table10.A2" office:value-type="string">
<text:p text:style-name="P17"><text:span text:style-name="Source_20_Text">{/}, {//}, </text:span><text:span text:style-name="Source_20_Text">{/.}</text:span></text:p>
</table:table-cell>
<table:table-cell table:style-name="Table10.B2" office:value-type="string">
<text:p text:style-name="P17"><text:span text:style-name="Source_20_Text">myfile.myext, mydir/mysubdir, </text:span><text:span text:style-name="Source_20_Text">myfile</text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table10.5">
<table:table-cell table:style-name="Table10.A2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text">{#}</text:span></text:p>
</table:table-cell>
<table:table-cell table:style-name="Table10.B2" office:value-type="string">
<text:p text:style-name="P8"><text:span text:style-name="T3">T</text:span>he sequence number of the job</text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table10.6">
<table:table-cell table:style-name="Table10.A2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text">{%}</text:span></text:p>
</table:table-cell>
<table:table-cell table:style-name="Table10.B2" office:value-type="string">
<text:p text:style-name="P8"><text:span text:style-name="T3">T</text:span>he job slot number</text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table10.7">
<table:table-cell table:style-name="Table10.A2" office:value-type="string">
<text:p text:style-name="P5"><text:span text:style-name="Source_20_Text">{2}</text:span></text:p>
</table:table-cell>
<table:table-cell table:style-name="Table10.B2" office:value-type="string">
<text:p text:style-name="P7"><text:span text:style-name="T17">Value from the s</text:span>econd input source</text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table10.8">
<table:table-cell table:style-name="Table10.A2" office:value-type="string">
<text:p text:style-name="P5"><text:span text:style-name="Source_20_Text">{2.} </text:span><text:span text:style-name="Source_20_Text"><text:span text:style-name="T17">{2/} {2//} {2/.}</text:span></text:span></text:p>
</table:table-cell>
<table:table-cell table:style-name="Table10.B2" office:value-type="string">
<text:p text:style-name="P7">Comb<text:span text:style-name="T17">ination </text:span>of {2} and {.} <text:span text:style-name="T17">{/} {//} {/.}</text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table10.9">
<table:table-cell table:style-name="Table10.A2" office:value-type="string">
<text:p text:style-name="P9"><text:span text:style-name="Source_20_Text">{= perl </text:span><text:span text:style-name="Source_20_Text"><text:span text:style-name="T13">expression</text:span></text:span><text:span text:style-name="Source_20_Text"> =}</text:span></text:p>
</table:table-cell>
<table:table-cell table:style-name="Table10.B2" office:value-type="string">
<text:p text:style-name="P7">Change $_ with perl expression</text:p>
</table:table-cell>
</table:table-row>
</table:table>
<text:p text:style-name="P2"/>
<table:table table:name="Table11" table:style-name="Table11">
<table:table-column table:style-name="Table11.A"/>
<table:table-row table:style-name="Table11.1">
<table:table-cell table:style-name="Table11.A1" office:value-type="string">
<text:p text:style-name="P13">Control the output <text:span text:style-name="T8">keep the order the same as the input</text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table11.2">
<table:table-cell table:style-name="Table11.A2" office:value-type="string">
<text:p text:style-name="P17"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T8">parallel --keep-order &quot;sleep {}; echo {}&quot; ::: 5 4 3 2 1</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
</table:table>
<text:p text:style-name="P2"/>
<table:table table:name="Table12" table:style-name="Table12">
<table:table-column table:style-name="Table12.A"/>
<table:table-row table:style-name="Table12.1">
<table:table-cell table:style-name="Table12.A1" office:value-type="string">
<text:p text:style-name="P13">Control the execution</text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table12.3">
<table:table-cell table:style-name="Table12.A2" office:value-type="string">
<text:p text:style-name="P19">Run 2 jobs in parallel</text:p>
<text:p text:style-name="P17"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T8">parallel --jobs 2 &quot;sleep {}; echo {}&quot; ::: 5 4 3 2 1</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table12.3">
<table:table-cell table:style-name="Table12.A2" office:value-type="string">
<text:p text:style-name="P19">See what will be run</text:p>
<text:p text:style-name="P21"><text:span text:style-name="Source_20_Text">parallel --dryrun echo ::: Red Green Blue ::: S M L</text:span></text:p>
</table:table-cell>
</table:table-row>
</table:table>
<text:p text:style-name="P2"/>
<table:table table:name="Table13" table:style-name="Table13">
<table:table-column table:style-name="Table13.A"/>
<table:table-row table:style-name="Table13.1">
<table:table-cell table:style-name="Table13.A1" office:value-type="string">
<text:p text:style-name="P22">Remote execution</text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table13.2">
<table:table-cell table:style-name="Table13.A2" office:value-type="string">
<text:p text:style-name="P17"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T8">parallel -S server1 -S server2 &quot;hostname; echo {}&quot; ::: foo bar </text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
</table:table>
<text:p text:style-name="P2"/>
<table:table table:name="Table1" table:style-name="Table1">
<table:table-column table:style-name="Table1.A"/>
<table:table-row table:style-name="Table1.1">
<table:table-cell table:style-name="Table1.A1" office:value-type="string">
<text:p text:style-name="P22">Pipe mode</text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table1.2">
<table:table-cell table:style-name="Table1.A2" office:value-type="string">
<text:p text:style-name="P11"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T8">cat bigfile | parallel --pipe wc -l</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table1.3">
<table:table-cell table:style-name="Table1.A2" office:value-type="string">
<text:p text:style-name="P4"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T16">Chop bigfile into one block per CPU thread and </text:span></text:span><text:span text:style-name="Source_20_Text"><text:span text:style-name="T19">grep</text:span></text:span><text:span text:style-name="Source_20_Text"><text:span text:style-name="T16"> for foobar</text:span></text:span><text:span text:style-name="Source_20_Text"><text:span text:style-name="T4"><text:line-break/>parallel -a bigfile --pipepart --block -1 grep foobar</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
</table:table>
<text:p text:style-name="P2"/>
<table:table table:name="Table2" table:style-name="Table2">
<table:table-column table:style-name="Table2.A"/>
<table:table-row table:style-name="Table2.1">
<table:table-cell table:style-name="Table2.A1" office:value-type="string">
<text:p text:style-name="P23">Read more <text:span text:style-name="T17">Your command line will love you for it</text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table2.3">
<table:table-cell table:style-name="Table2.A2" office:value-type="string">
<text:p text:style-name="P20"><text:span text:style-name="Source_20_Text"><text:span text:style-name="T17">parallel --help; <text:s/></text:span></text:span><text:span text:style-name="Source_20_Text">man parallel; <text:s/></text:span><text:span text:style-name="Source_20_Text"><text:span text:style-name="T17">man parallel_tutorial</text:span></text:span></text:p>
</table:table-cell>
</table:table-row>
<table:table-row table:style-name="Table2.3">
<table:table-cell table:style-name="Table2.A2" office:value-type="string">
<text:p text:style-name="P6"><text:span text:style-name="T13">GNU Parallel 2018 </text:span>https://doi.org/10.5281/zenodo.1146014</text:p>
</table:table-cell>
</table:table-row>
</table:table>
<text:p text:style-name="P1"/>
<text:p text:style-name="P1"/>
<text:p text:style-name="P1"/>
<text:p text:style-name="P1"/>
</office:text>
</office:body>
</office:document>