mirror of
https://git.savannah.gnu.org/git/parallel.git
synced 2024-10-18 04:49:40 +00:00
Released as 20140X22 ('Boko Haram').
This commit is contained in:
Ole Tange
parent
30b54613e8
commit
92366d743e
37
NEWS
37
NEWS
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@ -1,3 +1,40 @@
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20140522
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* Use --semaphoretimeout to ignore the semaphore lock after a while.
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* {%} introduced as job slot replacement string. It has known bugs.
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* --slotreplace changes slot replacement string.
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* GNU Parallel officially in Solaris 11.2beta
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https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to
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* GNU Parallel was cited in: A Comparison of Antenna Placement
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Algorithms http://abhinavjauhri.com/publications/eap.pdf
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* Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap)
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https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing
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* BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite
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* Isitdown uses GNU Parallel: http://www.isi.edu/~calvin/isitdown.md
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* Convert FLAC to MP3 with GNU parallel
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http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/
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* JD Edwards Business Function Documentation
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http://www.azertech.net/content/jd-edwards-business-function-documentation
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* Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/
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* How I start a bioinformatics project
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http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/
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* No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html
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* Bug fixes and man page updates.
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20140422
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* --pipepart is a highly efficient alternative to --pipe if the input
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12
README
12
README
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@ -40,9 +40,9 @@ document.
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Full installation of GNU Parallel is as simple as:
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wget http://ftpmirror.gnu.org/parallel/parallel-20140422.tar.bz2
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bzip2 -dc parallel-20140422.tar.bz2 | tar xvf -
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cd parallel-20140422
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wget http://ftpmirror.gnu.org/parallel/parallel-20140522.tar.bz2
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bzip2 -dc parallel-20140522.tar.bz2 | tar xvf -
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cd parallel-20140522
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./configure && make && make install
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@ -51,9 +51,9 @@ Full installation of GNU Parallel is as simple as:
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If you are not root you can add ~/bin to your path and install in
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~/bin and ~/share:
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wget http://ftpmirror.gnu.org/parallel/parallel-20140422.tar.bz2
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bzip2 -dc parallel-20140422.tar.bz2 | tar xvf -
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cd parallel-20140422
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wget http://ftpmirror.gnu.org/parallel/parallel-20140522.tar.bz2
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bzip2 -dc parallel-20140522.tar.bz2 | tar xvf -
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cd parallel-20140522
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./configure --prefix=$HOME && make && make install
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Or if your system lacks 'make' you can simply copy src/parallel
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20
configure
vendored
20
configure
vendored
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@ -1,6 +1,6 @@
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#! /bin/sh
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# Guess values for system-dependent variables and create Makefiles.
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# Generated by GNU Autoconf 2.69 for parallel 20140422.
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# Generated by GNU Autoconf 2.69 for parallel 20140522.
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#
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# Report bugs to <bug-parallel@gnu.org>.
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#
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@ -579,8 +579,8 @@ MAKEFLAGS=
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# Identity of this package.
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PACKAGE_NAME='parallel'
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PACKAGE_TARNAME='parallel'
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PACKAGE_VERSION='20140422'
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PACKAGE_STRING='parallel 20140422'
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PACKAGE_VERSION='20140522'
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PACKAGE_STRING='parallel 20140522'
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PACKAGE_BUGREPORT='bug-parallel@gnu.org'
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PACKAGE_URL=''
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@ -1194,7 +1194,7 @@ if test "$ac_init_help" = "long"; then
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# Omit some internal or obsolete options to make the list less imposing.
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# This message is too long to be a string in the A/UX 3.1 sh.
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cat <<_ACEOF
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\`configure' configures parallel 20140422 to adapt to many kinds of systems.
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\`configure' configures parallel 20140522 to adapt to many kinds of systems.
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Usage: $0 [OPTION]... [VAR=VALUE]...
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@ -1260,7 +1260,7 @@ fi
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if test -n "$ac_init_help"; then
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case $ac_init_help in
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short | recursive ) echo "Configuration of parallel 20140422:";;
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short | recursive ) echo "Configuration of parallel 20140522:";;
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esac
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cat <<\_ACEOF
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@ -1327,7 +1327,7 @@ fi
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test -n "$ac_init_help" && exit $ac_status
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if $ac_init_version; then
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cat <<\_ACEOF
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parallel configure 20140422
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parallel configure 20140522
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generated by GNU Autoconf 2.69
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Copyright (C) 2012 Free Software Foundation, Inc.
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@ -1344,7 +1344,7 @@ cat >config.log <<_ACEOF
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This file contains any messages produced by compilers while
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running configure, to aid debugging if configure makes a mistake.
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It was created by parallel $as_me 20140422, which was
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It was created by parallel $as_me 20140522, which was
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generated by GNU Autoconf 2.69. Invocation command line was
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$ $0 $@
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@ -2159,7 +2159,7 @@ fi
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# Define the identity of the package.
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PACKAGE='parallel'
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VERSION='20140422'
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VERSION='20140522'
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cat >>confdefs.h <<_ACEOF
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@ -2710,7 +2710,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
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# report actual input values of CONFIG_FILES etc. instead of their
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# values after options handling.
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ac_log="
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This file was extended by parallel $as_me 20140422, which was
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This file was extended by parallel $as_me 20140522, which was
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generated by GNU Autoconf 2.69. Invocation command line was
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CONFIG_FILES = $CONFIG_FILES
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@ -2772,7 +2772,7 @@ _ACEOF
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cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
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ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
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ac_cs_version="\\
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parallel config.status 20140422
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parallel config.status 20140522
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configured by $0, generated by GNU Autoconf 2.69,
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with options \\"\$ac_cs_config\\"
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@ -1,4 +1,4 @@
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AC_INIT([parallel], [20140422], [bug-parallel@gnu.org])
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AC_INIT([parallel], [20140522], [bug-parallel@gnu.org])
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AM_INIT_AUTOMAKE([-Wall -Werror foreign])
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AC_CONFIG_HEADERS([config.h])
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AC_CONFIG_FILES([
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@ -221,8 +221,16 @@ GNU Parallel 20140522 ('Boko Haram') has been released. It is available for down
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New in this release:
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||||
|
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* Use --semaphoretimeout to ignore the semaphore lock after a while.
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|
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* {%} introduced as job slot replacement string. It has known bugs.
|
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|
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* --slotreplace changes slot replacement string.
|
||||
|
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* GNU Parallel officially in Solaris 11.2beta https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to
|
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|
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* GNU Parallel was cited in: A Comparison of Antenna Placement Algorithms http://abhinavjauhri.com/publications/eap.pdf
|
||||
|
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* Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap) https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing
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* BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite
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@ -231,6 +239,12 @@ New in this release:
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|||
|
||||
* Convert FLAC to MP3 with GNU parallel http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/
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||||
|
||||
* JD Edwards Business Function Documentation http://www.azertech.net/content/jd-edwards-business-function-documentation
|
||||
|
||||
* Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/
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|
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* How I start a bioinformatics project http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/
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|
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* No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html
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* Bug fixes and man page updates.
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|
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@ -1,6 +1,6 @@
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Summary: Shell tool for executing jobs in parallel
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Name: parallel
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Version: 20140422
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Version: 20140522
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Release: 1
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License: GPL
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Group: Productivity/File utilities
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@ -24,7 +24,7 @@
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use strict;
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use Getopt::Long;
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$Global::progname="niceload";
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$Global::version = 20140422;
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$Global::version = 20140522;
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Getopt::Long::Configure("bundling","require_order");
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get_options_from_array(\@ARGV) || die_usage();
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if($opt::version) {
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@ -733,7 +733,7 @@ sub get_options_from_array {
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sub parse_options {
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# Returns: N/A
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# Defaults:
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$Global::version = 20140422;
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$Global::version = 20140522;
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$Global::progname = 'parallel';
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$Global::infinity = 2**31;
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$Global::debug = 0;
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@ -5167,10 +5167,10 @@ sub print {
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# The read is non-blocking: The $in_fh is set to non-blocking.
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# 32768 --tag = 5.1s
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# 327680 --tag = 4.4s
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# 1024000 --tag = 4.4s
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# 1024000 --tag = 4.4s
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# 3276800 --tag = 4.3s
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# 32768000 --tag = 4.7s
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# 10240000 --tag = 4.3s
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# 10240000 --tag = 4.3s
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while(read($in_fh,substr($$partial,length $$partial),3276800)) {
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# Append to $$partial
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# Find the last \n
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|
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BIN
src/parallel.pdf
BIN
src/parallel.pdf
Binary file not shown.
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@ -168,6 +168,16 @@ The replacement string B<{#}> can be changed with B<--seqreplace>.
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To understand replacement strings see B<{}>.
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=item B<{%}> (experimental)
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Job slot number. This replacement string will be replaced by the job's
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sequence number modulo the number of jobs to run in parallel.
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The replacement string B<{%}> can be changed with B<--slotreplace>.
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To understand replacement strings see B<{}>.
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=item B<{>I<n>B<}>
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Argument from input source I<n> or the I<n>'th argument. This
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@ -395,7 +405,7 @@ I<size> defaults to 1M.
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See B<--pipe> for use of this.
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=item B<--cat> (alpha testing)
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=item B<--cat> (beta testing)
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|
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Create a temporary file with content. Normally B<--pipe> will give
|
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data to the program on stdin (standard input). With B<--cat> GNU
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|
|
@ -553,7 +563,7 @@ See also B<--bg>, B<man sem>.
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Implies B<--semaphore>.
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=item B<--fifo> (alpha testing)
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=item B<--fifo> (beta testing)
|
||||
|
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Create a temporary fifo with content. Normally B<--pipe> will give
|
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data to the program on stdin (standard input). With B<--fifo> GNU
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|
@ -595,6 +605,8 @@ B<parallel> by a factor of 10.
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|
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B<--group> is the default. Can be reversed with B<-u>.
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|
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See also: B<--line-buffer> B<--ungroup>
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|
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=item B<--help>
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@ -786,7 +798,7 @@ B<-l 0> is an alias for B<-l 1>.
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Implies B<-X> unless B<-m>, B<--xargs>, or B<--pipe> is set.
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|
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|
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=item B<--line-buffer>
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=item B<--line-buffer> (alpha testing)
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|
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Buffer output on line basis. B<--group> will keep the output together
|
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for a whole job. B<--ungroup> allows output to mixup with half a line
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|
@ -794,7 +806,11 @@ coming from one job and half a line coming from another
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job. B<--line-buffer> fits between these two: GNU B<parallel> will
|
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print a full line, but will allow for mixing lines of different jobs.
|
||||
|
||||
B<--line-buffer> is slower than both B<--group> and B<--ungroup>.
|
||||
B<--line-buffer> takes more CPU power than than both B<--group> and
|
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B<--ungroup>, but can be faster than B<--group> if the CPU is not the
|
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limiting factor.
|
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|
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See also: B<--group> B<--ungroup>
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|
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|
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=item B<--load> I<max-load>
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|
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@ -1076,6 +1092,19 @@ If the stdin (standard input) only contains whitespace, do not run the command.
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If used with B<--pipe> this is slow.
|
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|
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|
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=item B<--noswap>
|
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|
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Do not start new jobs on a given computer if there is both swap-in and
|
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swap-out activity.
|
||||
|
||||
The swap activity is only sampled every 10 seconds as the sampling
|
||||
takes 1 second to do.
|
||||
|
||||
Swap activity is computed as (swap-in)*(swap-out) which in practice is
|
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a good value: swapping out is not a problem, swapping in is not a
|
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problem, but both swapping in and out usually indicates a problem.
|
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|
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=item B<--record-env>
|
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|
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Record current environment variables in ~/.parallel/ignored_vars. This
|
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|
|
@ -1270,7 +1299,7 @@ operating system and the B<-s> option. Pipe the input from /dev/null
|
|||
to do anything.
|
||||
|
||||
|
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=item B<--semaphore>
|
||||
=item B<--semaphore> (alpha testing)
|
||||
|
||||
Work as a counting semaphore. B<--semaphore> will cause GNU
|
||||
B<parallel> to start I<command> in the background. When the number of
|
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|
|
@ -1307,7 +1336,7 @@ Implies B<--semaphore>.
|
|||
See also B<man sem>.
|
||||
|
||||
|
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=item B<--semaphoretimeout> I<secs> (not implemented)
|
||||
=item B<--semaphoretimeout> I<secs> (alpha testing)
|
||||
|
||||
If the semaphore is not released within secs seconds, take it anyway.
|
||||
|
||||
|
|
@ -1468,17 +1497,10 @@ The sshloginfile '-' is special, too, it read sshlogins from stdin
|
|||
(standard input).
|
||||
|
||||
|
||||
=item B<--noswap>
|
||||
=item B<--slotreplace> I<replace-str>
|
||||
|
||||
Do not start new jobs on a given computer if there is both swap-in and
|
||||
swap-out activity.
|
||||
|
||||
The swap activity is only sampled every 10 seconds as the sampling
|
||||
takes 1 second to do.
|
||||
|
||||
Swap activity is computed as (swap-in)*(swap-out) which in practice is
|
||||
a good value: swapping out is not a problem, swapping in is not a
|
||||
problem, but both swapping in and out usually indicates a problem.
|
||||
Use the replacement string I<replace-str> instead of B<{%}> for
|
||||
job slot number.
|
||||
|
||||
|
||||
=item B<--silent>
|
||||
|
|
@ -1620,6 +1642,8 @@ B<parallel -u -j0 'sleep {};echo -n start{};sleep {};echo {}end' ::: 1 2 3 4>
|
|||
It also disables B<--tag>. GNU B<parallel> runs faster with B<-u>. Can
|
||||
be reversed with B<--group>.
|
||||
|
||||
See also: B<--line-buffer> B<--group>
|
||||
|
||||
|
||||
=item B<--extensionreplace> I<replace-str>
|
||||
|
||||
|
|
|
|||
|
|
@ -244,6 +244,16 @@ The replacement string @strong{@{#@}} can be changed with @strong{--seqreplace}.
|
|||
|
||||
To understand replacement strings see @strong{@{@}}.
|
||||
|
||||
@item @strong{@{%@}} (experimental)
|
||||
@anchor{@strong{@{%@}} (experimental)}
|
||||
|
||||
Job slot number. This replacement string will be replaced by the job's
|
||||
sequence number modulo the number of jobs to run in parallel.
|
||||
|
||||
The replacement string @strong{@{%@}} can be changed with @strong{--slotreplace}.
|
||||
|
||||
To understand replacement strings see @strong{@{@}}.
|
||||
|
||||
@item @strong{@{}@emph{n}@strong{@}}
|
||||
@anchor{@strong{@{}@emph{n}@strong{@}}}
|
||||
|
||||
|
|
@ -481,8 +491,8 @@ than a single record.
|
|||
|
||||
See @strong{--pipe} for use of this.
|
||||
|
||||
@item @strong{--cat} (alpha testing)
|
||||
@anchor{@strong{--cat} (alpha testing)}
|
||||
@item @strong{--cat} (beta testing)
|
||||
@anchor{@strong{--cat} (beta testing)}
|
||||
|
||||
Create a temporary file with content. Normally @strong{--pipe} will give
|
||||
data to the program on stdin (standard input). With @strong{--cat} GNU
|
||||
|
|
@ -647,8 +657,8 @@ See also @strong{--bg}, @strong{man sem}.
|
|||
|
||||
Implies @strong{--semaphore}.
|
||||
|
||||
@item @strong{--fifo} (alpha testing)
|
||||
@anchor{@strong{--fifo} (alpha testing)}
|
||||
@item @strong{--fifo} (beta testing)
|
||||
@anchor{@strong{--fifo} (beta testing)}
|
||||
|
||||
Create a temporary fifo with content. Normally @strong{--pipe} will give
|
||||
data to the program on stdin (standard input). With @strong{--fifo} GNU
|
||||
|
|
@ -690,6 +700,8 @@ together, then disabling grouping with @strong{-u} can speedup GNU
|
|||
|
||||
@strong{--group} is the default. Can be reversed with @strong{-u}.
|
||||
|
||||
See also: @strong{--line-buffer} @strong{--ungroup}
|
||||
|
||||
@item @strong{--help}
|
||||
@anchor{@strong{--help}}
|
||||
|
||||
|
|
@ -904,8 +916,8 @@ standard specifies @strong{-L} instead.
|
|||
|
||||
Implies @strong{-X} unless @strong{-m}, @strong{--xargs}, or @strong{--pipe} is set.
|
||||
|
||||
@item @strong{--line-buffer}
|
||||
@anchor{@strong{--line-buffer}}
|
||||
@item @strong{--line-buffer} (alpha testing)
|
||||
@anchor{@strong{--line-buffer} (alpha testing)}
|
||||
|
||||
Buffer output on line basis. @strong{--group} will keep the output together
|
||||
for a whole job. @strong{--ungroup} allows output to mixup with half a line
|
||||
|
|
@ -913,7 +925,11 @@ coming from one job and half a line coming from another
|
|||
job. @strong{--line-buffer} fits between these two: GNU @strong{parallel} will
|
||||
print a full line, but will allow for mixing lines of different jobs.
|
||||
|
||||
@strong{--line-buffer} is slower than both @strong{--group} and @strong{--ungroup}.
|
||||
@strong{--line-buffer} takes more CPU power than than both @strong{--group} and
|
||||
@strong{--ungroup}, but can be faster than @strong{--group} if the CPU is not the
|
||||
limiting factor.
|
||||
|
||||
See also: @strong{--group} @strong{--ungroup}
|
||||
|
||||
@item @strong{--load} @emph{max-load}
|
||||
@anchor{@strong{--load} @emph{max-load}}
|
||||
|
|
@ -1205,6 +1221,19 @@ If the stdin (standard input) only contains whitespace, do not run the command.
|
|||
|
||||
If used with @strong{--pipe} this is slow.
|
||||
|
||||
@item @strong{--noswap}
|
||||
@anchor{@strong{--noswap}}
|
||||
|
||||
Do not start new jobs on a given computer if there is both swap-in and
|
||||
swap-out activity.
|
||||
|
||||
The swap activity is only sampled every 10 seconds as the sampling
|
||||
takes 1 second to do.
|
||||
|
||||
Swap activity is computed as (swap-in)*(swap-out) which in practice is
|
||||
a good value: swapping out is not a problem, swapping in is not a
|
||||
problem, but both swapping in and out usually indicates a problem.
|
||||
|
||||
@item @strong{--record-env}
|
||||
@anchor{@strong{--record-env}}
|
||||
|
||||
|
|
@ -1419,8 +1448,8 @@ operating system and the @strong{-s} option. Pipe the input from /dev/null
|
|||
(and perhaps specify --no-run-if-empty) if you don't want GNU @strong{parallel}
|
||||
to do anything.
|
||||
|
||||
@item @strong{--semaphore}
|
||||
@anchor{@strong{--semaphore}}
|
||||
@item @strong{--semaphore} (alpha testing)
|
||||
@anchor{@strong{--semaphore} (alpha testing)}
|
||||
|
||||
Work as a counting semaphore. @strong{--semaphore} will cause GNU
|
||||
@strong{parallel} to start @emph{command} in the background. When the number of
|
||||
|
|
@ -1457,8 +1486,8 @@ Implies @strong{--semaphore}.
|
|||
|
||||
See also @strong{man sem}.
|
||||
|
||||
@item @strong{--semaphoretimeout} @emph{secs} (not implemented)
|
||||
@anchor{@strong{--semaphoretimeout} @emph{secs} (not implemented)}
|
||||
@item @strong{--semaphoretimeout} @emph{secs} (alpha testing)
|
||||
@anchor{@strong{--semaphoretimeout} @emph{secs} (alpha testing)}
|
||||
|
||||
If the semaphore is not released within secs seconds, take it anyway.
|
||||
|
||||
|
|
@ -1639,18 +1668,11 @@ The sshloginfile '.' is special, it read sshlogins from
|
|||
The sshloginfile '-' is special, too, it read sshlogins from stdin
|
||||
(standard input).
|
||||
|
||||
@item @strong{--noswap}
|
||||
@anchor{@strong{--noswap}}
|
||||
@item @strong{--slotreplace} @emph{replace-str}
|
||||
@anchor{@strong{--slotreplace} @emph{replace-str}}
|
||||
|
||||
Do not start new jobs on a given computer if there is both swap-in and
|
||||
swap-out activity.
|
||||
|
||||
The swap activity is only sampled every 10 seconds as the sampling
|
||||
takes 1 second to do.
|
||||
|
||||
Swap activity is computed as (swap-in)*(swap-out) which in practice is
|
||||
a good value: swapping out is not a problem, swapping in is not a
|
||||
problem, but both swapping in and out usually indicates a problem.
|
||||
Use the replacement string @emph{replace-str} instead of @strong{@{%@}} for
|
||||
job slot number.
|
||||
|
||||
@item @strong{--silent}
|
||||
@anchor{@strong{--silent}}
|
||||
|
|
@ -1802,6 +1824,8 @@ care about the output. Compare these:
|
|||
It also disables @strong{--tag}. GNU @strong{parallel} runs faster with @strong{-u}. Can
|
||||
be reversed with @strong{--group}.
|
||||
|
||||
See also: @strong{--line-buffer} @strong{--group}
|
||||
|
||||
@item @strong{--extensionreplace} @emph{replace-str}
|
||||
@anchor{@strong{--extensionreplace} @emph{replace-str}}
|
||||
|
||||
|
|
|
|||
|
|
@ -124,7 +124,7 @@
|
|||
.\" ========================================================================
|
||||
.\"
|
||||
.IX Title "PARALLEL_TUTORIAL 1"
|
||||
.TH PARALLEL_TUTORIAL 1 "2014-01-25" "20140422" "parallel"
|
||||
.TH PARALLEL_TUTORIAL 1 "2014-01-25" "20140522" "parallel"
|
||||
.\" For nroff, turn off justification. Always turn off hyphenation; it makes
|
||||
.\" way too many mistakes in technical documents.
|
||||
.if n .ad l
|
||||
|
|
|
|||
2
src/sql
2
src/sql
|
|
@ -566,7 +566,7 @@ $Global::Initfile && unlink $Global::Initfile;
|
|||
exit ($err);
|
||||
|
||||
sub parse_options {
|
||||
$Global::version = 20140422;
|
||||
$Global::version = 20140522;
|
||||
$Global::progname = 'sql';
|
||||
|
||||
# This must be done first as this may exec myself
|
||||
|
|
|
|||
BIN
src/sql.pdf
BIN
src/sql.pdf
Binary file not shown.
|
|
@ -190,6 +190,14 @@ when called with @strong{--shebang}).
|
|||
|
||||
Size of tables. Show the size of the tables in the database.
|
||||
|
||||
@item @strong{--verbose}
|
||||
@anchor{@strong{--verbose}}
|
||||
|
||||
@item @strong{-v}
|
||||
@anchor{@strong{-v}}
|
||||
|
||||
Print which command is sent.
|
||||
|
||||
@item @strong{--version}
|
||||
@anchor{@strong{--version}}
|
||||
|
||||
|
|
|
|||
|
|
@ -110,9 +110,9 @@ cat ... | parallel --pipe [options] [command [arguments]]
|
|||
-j n Run n jobs in parallel
|
||||
-k Keep same order
|
||||
-X Multiple arguments with context replace
|
||||
--colsep regexp Split input on regexp for positional replacements
|
||||
{} {.} {/} {/.} {#} Replacement strings
|
||||
{3} {3.} {3/} {3/.} Positional replacement strings
|
||||
--colsep regexp Split input on regexp for positional replacements
|
||||
{} {.} {/} {/.} {#} {%} Replacement strings
|
||||
{3} {3.} {3/} {3/.} Positional replacement strings
|
||||
|
||||
-S sshlogin Example: foo@server.example.com
|
||||
--slf .. Use ~/.parallel/sshloginfile as the list of sshlogins
|
||||
|
|
|
|||
Loading…
Reference in a new issue