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parallel: --memfree prototype.
This commit is contained in:
Ole Tange
parent
f2402e1e83
commit
962ad80ccd
135
src/parallel
135
src/parallel
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@ -688,6 +688,7 @@ sub options_hash {
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"xapply" => \$opt::xapply,
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"bibtex" => \$opt::bibtex,
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"nn|nonotice|no-notice" => \$opt::no_notice,
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"memfree=s" => \$opt::memfree,
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# xargs-compatibility - implemented, man, testsuite
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"max-procs|P=s" => \$opt::jobs,
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"delimiter|d=s" => \$opt::d,
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@ -816,6 +817,7 @@ sub parse_options {
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not defined $opt::recend) { $opt::recend = "\n"; }
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if(not defined $opt::blocksize) { $opt::blocksize = "1M"; }
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$opt::blocksize = multiply_binary_prefix($opt::blocksize);
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$opt::memfree = multiply_binary_prefix($opt::memfree);
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if(defined $opt::controlmaster) { $opt::noctrlc = 1; }
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if(defined $opt::halt_on_error and
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$opt::halt_on_error=~/%/) { $opt::halt_on_error /= 100; }
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@ -1508,9 +1510,10 @@ sub shell_quote_scalar {
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# $shell_quoted = string quoted with \ as needed by the shell
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my $a = $_[0];
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if(defined $a) {
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# $a =~ s/([\002-\011\013-\032\\\#\?\`\(\)\{\}\[\]\*\>\<\~\|\; \"\!\$\&\'\202-\377])/\\$1/g;
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# Solaris sh wants ^ quoted.
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# $a =~ s/([\002-\011\013-\032\\\#\?\`\(\)\{\}\[\]\^\*\>\<\~\|\; \"\!\$\&\'\202-\377])/\\$1/g;
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# This is 1% faster than the above
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$a =~ s/[\002-\011\013-\032\\\#\?\`\(\)\{\}\[\]\*\>\<\~\|\; \"\!\$\&\'\202-\377]/\\$&/go;
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$a =~ s/[\002-\011\013-\032\\\#\?\`\(\)\{\}\[\]\^\*\>\<\~\|\; \"\!\$\&\'\202-\377]/\\$&/go;
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$a =~ s/[\n]/'\n'/go; # filenames with '\n' is quoted using \'
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}
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return $a;
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@ -1737,6 +1740,10 @@ sub init_run_jobs {
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debug("run", "Running jobs before on ", $sshlogin->string(), ": ",
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$sshlogin->jobs_running(), "\n");
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if ($sshlogin->jobs_running() < $sshlogin->max_jobs_running()) {
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if($opt::delay and $opt::delay > ::now() - $Global::newest_starttime) {
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# It has been too short since last start
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next;
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}
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if($opt::load and $sshlogin->loadavg_too_high()) {
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# The load is too high or unknown
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next;
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@ -1745,12 +1752,13 @@ sub init_run_jobs {
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# The server is swapping
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next;
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}
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if($sshlogin->too_fast_remote_login()) {
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# It has been too short since
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if($opt::memfree and $sshlogin->memfree() < $opt::memfree) {
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# The server has not enough mem free
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::debug("mem", "Not starting job: not enough mem\n");
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next;
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}
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if($opt::delay and $opt::delay > ::now() - $Global::newest_starttime) {
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# It has been too short since last start
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if($sshlogin->too_fast_remote_login()) {
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# It has been too short since
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next;
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}
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debug("run", $sshlogin->string(), " has ", $sshlogin->jobs_running(),
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@ -3286,6 +3294,9 @@ sub reap_usleep {
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if($opt::timeout) {
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$Global::timeoutq->process_timeouts();
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}
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if($opt::memfree) {
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kill_youngster_if_not_enough_mem();
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}
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usleep($ms);
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Job::exit_if_disk_full();
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if($opt::linebuffer) {
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@ -3326,6 +3337,33 @@ sub now {
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return (int(TimeHiRestime()*1000))/1000;
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}
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sub kill_youngster_if_not_enough_mem {
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# Check each $sshlogin if there is enough mem.
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# If less than 50% enough free mem: kill off the youngest child
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# Put the child back in the queue.
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my %jobs_of;
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use Tie::RefHash;
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tie %jobs_of, 'Tie::RefHash';
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for my $job (values %Global::running) {
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push @{$jobs_of{$job->sshlogin()}}, $job;
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}
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for my $sshlogin (keys %jobs_of) {
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for my $job (sort { $b->seq() <=> $a->seq() } @{$jobs_of{$sshlogin}}) {
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if($sshlogin->memfree() < $opt::memfree * 0.5) {
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::debug("mem","\n",map { $_->seq()." " } (sort { $b->seq() <=> $a->seq() } @{$jobs_of{$sshlogin}}));
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::debug("mem","\n", $job->seq(), "killed ",
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$sshlogin->memfree()," < ",$opt::memfree * 0.5);
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$job->kill();
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$sshlogin->memfree_recompute();
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} else {
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last;
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}
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}
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::debug("mem","Free mem OK ", $sshlogin->memfree()," > ",$opt::memfree * 0.5);
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}
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}
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sub multiply_binary_prefix {
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# Evalualte numbers with binary prefix
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# Ki=2^10, Mi=2^20, Gi=2^30, Ti=2^40, Pi=2^50, Ei=2^70, Zi=2^80, Yi=2^80
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@ -3607,6 +3645,83 @@ sub set_max_jobs_running {
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$self->{'orig_max_jobs_running'} ||= $self->{'max_jobs_running'};
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}
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sub memfree {
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# Returns:
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# $memfree in bytes
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my $self = shift;
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if(not $self->{'memfree'}) {
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$self->memfree_recompute();
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}
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# if(time - $self->{'last_memfree'} >= 1) {
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# More than 10 seconds old: Recompute
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$self->{'last_memfree'} = time;
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$self->memfree_recompute();
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# }
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return (not defined $self->{'memfree'} or $self->{'memfree'})
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}
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sub memfree_recompute {
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my $self = shift;
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my $script = memfreescript();
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# TODO add sshlogin and backgrounding
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$self->{'memfree'} = `$script`;
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#::debug("mem","New free:",$self->{'memfree'}," ");
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}
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{
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my $script;
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sub memfreescript {
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# Returns:
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# shellscript for giving available memory in bytes
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if(not $script) {
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my %script_of = (
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# $ free
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# total used free shared buffers cached
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# Mem: 8075152 4922780 3152372 338856 233356 1658604
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# -/+ buffers/cache: 3030820 5044332
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# Swap: 8286204 116924 8169280
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"linux" => q{ print (1024*((grep /buffers.cache/, `free`)[0] =~ /buffers.cache:\s+\S+\s+(\S+)/)[0]) },
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# $ vmstat 1 1
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# procs memory page faults cpu
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# r b w avm free re at pi po fr de sr in sy cs us sy id
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# 1 0 0 242793 389737 5 1 0 0 0 0 0 107 978 60 1 1 99
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"hpux" => q{ print (((reverse `vmstat 1 1`)[0] =~ /(?:\d+\D+){4}(\d+)/)[0]*1024) },
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# $ vmstat 1 2
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# kthr memory page disk faults cpu
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# r b w swap free re mf pi po fr de sr s3 s4 -- -- in sy cs us sy id
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# 0 0 0 6496720 5170320 68 260 8 2 1 0 0 -0 3 0 0 309 1371 255 1 2 97
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# 0 0 0 6434088 5072656 7 15 8 0 0 0 0 0 261 0 0 1889 1899 3222 0 8 92
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#
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# The last free is really free
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"solaris" => q{ print (((reverse `vmstat 1 2`)[0] =~ /(?:\d+\D+){4}(\d+)/)[0]*1024) },
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"freebsd" => q{
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for(qx{/sbin/sysctl -a}) {
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if (/^([^:]+):\s+(.+)\s*$/s) {
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$sysctl->{$1} = $2;
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}
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}
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print $sysctl->{"hw.pagesize"} *
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($sysctl->{"vm.stats.vm.v_cache_count"}
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+ $sysctl->{"vm.stats.vm.v_inactive_count"}
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+ $sysctl->{"vm.stats.vm.v_free_count"});
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},
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);
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my $perlscript = "";
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# Make a perl script that detects the OS ($^O) and runs
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# the appropriate command
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for my $os (keys %script_of) {
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$perlscript .= 'if($^O eq "'.$os.'") { '.$script_of{$os}.'}';
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}
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$perlscript =~ s/[\t\n]/ /g;
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$perlscript = "perl -e " . ::shell_quote_scalar($perlscript);
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$script = $Global::envvar. " " .$perlscript;
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}
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return $script
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}
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}
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sub swapping {
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my $self = shift;
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my $swapping = $self->swap_activity();
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@ -6170,6 +6285,7 @@ sub should_be_retried {
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} else {
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# This command should be retried
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$self->set_endtime(undef);
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$self->reset_exitstatus();
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$Global::JobQueue->unget($self);
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::debug("run", "Retry ", $self->seq(), "\n");
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return 1;
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@ -6438,6 +6554,11 @@ sub set_exitstatus {
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}
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}
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sub reset_exitstatus {
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my $self = shift;
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$self->{'exitstatus'} = undef;
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}
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sub exitsignal {
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my $self = shift;
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return $self->{'exitsignal'};
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@ -7011,7 +7132,7 @@ sub replaced {
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if($quote) {
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@target = ::shell_quote(@target);
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}
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::debug("replace", "%replace=",::my_dump(%replace),"\n");
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# ::debug("replace", "%replace=",::my_dump(%replace),"\n");
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if(%replace) {
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# Substitute the replace strings with the replacement values
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# Must be sorted by length if a short word is a substring of a long word
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