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parallel: Time in --bar is printed as 1d02h03m04s.
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@ -4,6 +4,7 @@
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Check that documentation is updated (compare to web):
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git grep -E '(alpha|beta) testing' | cat
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git diff last-release-commit
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Unmodified beta since last version => production
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Unmodified alpha since last version => beta
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@ -198,37 +199,19 @@ to:parallel@gnu.org, bug-parallel@gnu.org
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stable-bcc: Jesse Alama <jessealama@fastmail.fm>
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Subject: GNU Parallel 20180322 ('Hawking') released <<[stable]>>
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Subject: GNU Parallel 20180422 ('Trèbes') released <<[stable]>>
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GNU Parallel 20180322 ('Hawking') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
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GNU Parallel 20180422 ('Trèbes') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
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<<No new functionality was introduced so this is a good candidate for a stable release.>>
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Quote of the month:
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If you aren’t nesting
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gnu parallel calls in gnu parallel calls
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I don’t know how you have fun.
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-- Ernest W. Durbin III EWDurbin@twitter
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<<>>
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--
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New in this release:
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* niceload -p can now take multiple pids separated by comma
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* --timeout gives a warning when killing processes
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* --embed now uses the same code for all supported shells
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* --delay can now take arguments like 1h12m07s
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* Parallel. Straight from your command line https://medium.com/@alonisser/parallel-straight-from-your-command-line-feb6db8b6cee
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* GNU Parallel was used in POAP-Parallelized Open Babel & Autodock suite Pipeline https://github.com/inpacdb/POAP
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* Pi Cluster Parallel Script First Fire https://chiefio.wordpress.com/2018/02/23/pi-cluster-parallel-script-first-fire/
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* How to Restore MySQL Logical Backup at Maximum Speed https://www.percona.com/blog/2018/02/22/restore-mysql-logical-backup-maximum-speed/
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<<Citation not OK: BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing https://www.nature.com/articles/s41598-017-01703-6>>
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@ -301,13 +284,13 @@ Walk through the tutorial (man parallel_tutorial). Your commandline will love yo
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When using programs that use GNU Parallel to process data for publication please cite:
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O. Tange (2011): GNU Parallel - The Command-Line Power Tool, ;login: The USENIX Magazine, February 2011:42-47.
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O. Tange (2018): GNU Parallel 2018, April 2018, https://doi.org/10.5281/zenodo.1146014.
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If you like GNU Parallel:
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* Give a demo at your local user group/team/colleagues
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* Post the intro videos on Reddit/Diaspora*/forums/blogs/ Identi.ca/Google+/Twitter/Facebook/Linkedin/mailing lists
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* Get the merchandise https://www.gnu.org/s/parallel/merchandise.html
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* Get the merchandise https://gnuparallel.threadless.com/designs/gnu-parallel
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* Request or write a review for your favourite blog or magazine
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* Request or build a package for your favourite distribution (if it is not already there)
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* Invite me for your next conference
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@ -24,7 +24,7 @@
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use strict;
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use Getopt::Long;
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$Global::progname="niceload";
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$Global::version = 20180322;
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$Global::version = 20180323;
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Getopt::Long::Configure("bundling","require_order");
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get_options_from_array(\@ARGV) || die_usage();
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if($opt::version) {
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@ -132,9 +132,9 @@ useful to keep the connection alive.
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Sets niceness. See B<nice>(1).
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=item B<-p> I<PID>[,I<PID>] (alpha testing)
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=item B<-p> I<PID>[,I<PID>] (beta testing)
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=item B<--pid> I<PID>[,I<PID>] (alpha testing)
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=item B<--pid> I<PID>[,I<PID>] (beta testing)
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Process IDs of processes to suspend. You can specify multiple process
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IDs with multiple B<-p> I<PID> or by separating the PIDs with comma.
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34
src/parallel
34
src/parallel
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@ -1417,7 +1417,7 @@ sub check_invalid_option_combinations {
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sub init_globals {
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# Defaults:
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$Global::version = 20180322;
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$Global::version = 20180323;
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$Global::progname = 'parallel';
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$Global::infinity = 2**31;
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$Global::debug = 0;
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@ -3025,9 +3025,10 @@ sub progress {
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replace_placeholders(["\257<\257>"],0,0) : "";
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# These chars mess up display in the terminal
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$arg =~ tr/[\011-\016\033\302-\365]//d;
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my $eta_dhms = ::seconds_to_time_units($eta);
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my $bar_text =
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sprintf("%d%% %d:%d=%ds %s",
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$pctcomplete*100, $completed, $left, $eta, $arg);
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sprintf("%d%% %d:%d=%s %s",
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$pctcomplete*100, $completed, $left, $eta_dhms, $arg);
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my $terminal_width = terminal_columns();
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my $s = sprintf("%-${terminal_width}s",
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substr($bar_text." "x$terminal_width,
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@ -4594,6 +4595,33 @@ sub multiply_time_units {
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return wantarray ? @v : $v[0];
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}
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sub seconds_to_time_units {
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# Convert seconds into ??d??h??m??s
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# s=1, m=60, h=3600, d=86400
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# Input:
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# $s = int in seconds
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# Returns:
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# $str = string time units
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my $s = shift;
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my $str;
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my $d = int($s/86400);
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$s -= $d * 86400;
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my $h = int($s/3600);
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$s -= $h * 3600;
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my $m = int($s/60);
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$s -= $m * 60;
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if($d) {
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$str = sprintf("%dd%02dh%02dm%02ds",$d,$h,$m,$s);
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} elsif($h) {
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$str = sprintf("%dh%02dm%02ds",$h,$m,$s);
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} elsif($m) {
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$str = sprintf("%dm%02ds",$m,$s);
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} else {
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$str = sprintf("%ds",$s);
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}
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return $str;
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}
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{
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my ($disk_full_fh, $b8193, $error_printed);
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sub exit_if_disk_full {
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@ -648,7 +648,7 @@ If I<eof-str> is omitted, there is no end of file string. If neither
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B<-E> nor B<-e> is used, no end of file string is used.
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=item B<--embed> (alpha testing)
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=item B<--embed> (beta testing)
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Embed GNU B<parallel> in a shell script. If you need to distribute your
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script to someone who does not want to install GNU B<parallel> you can
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@ -2899,6 +2899,24 @@ B<$(date -d "today -$1 days" +%Y%m%d)> will give the dates in
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YYYYMMDD with B<$1> days subtracted.
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=head1 EXAMPLE: Download world map from NASA
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NASA provides tiles to download on earthdata.nasa.gov. Download tiles
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for Blue Marble world map and create a 10240x20480 map.
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base=https://map1a.vis.earthdata.nasa.gov/wmts-geo/wmts.cgi
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service="SERVICE=WMTS&REQUEST=GetTile&VERSION=1.0.0"
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layer="LAYER=BlueMarble_ShadedRelief_Bathymetry"
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set="STYLE=&TILEMATRIXSET=EPSG4326_500m&TILEMATRIX=5"
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tile="TILEROW={1}&TILECOL={2}"
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format="FORMAT=image%2Fjpeg"
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url="$base?$service&$layer&$set&$tile&$format"
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parallel -j0 -q wget "$url" -O {1}_{2}.jpg ::: {0..19} ::: {0..39}
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parallel eval convert +append {}_{0..39}.jpg line{}.jpg ::: {0..19}
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convert -append line{0..19}.jpg world.jpg
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=head1 EXAMPLE: Copy files as last modified date (ISO8601) with added random digits
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find . | parallel cp {} '../destdir/{= $a=int(10000*rand); $_=pQ($_);
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@ -3995,7 +4013,7 @@ the file at the same time.
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Name the semaphore to have multiple different semaphores active at the
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same time:
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seq 3 | parallel sem --id mymutex sed -i -e 'i{}' myfile
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seq 3 | parallel sem --id mymutex sed -i -e '1i{}' myfile
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=head1 EXAMPLE: Mutex for a script
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@ -11,7 +11,7 @@ parset - set shell variables in parallel
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B<parset> I<variablename> [options for GNU Parallel]
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B<env_parset> I<variablename> [options for GNU Parallel] (beta testing)
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B<env_parset> I<variablename> [options for GNU Parallel]
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=head1 DESCRIPTION
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