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parallel: Use a perl script wrapper to avoid security issue with race condition:
Attacker symlinks a file that will be created later.
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@ -215,10 +215,19 @@ GNU Parallel 20150422 ('Germanwings') has been released. It is available for dow
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Haiku of the month:
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<<>>
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SSH set up?
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Instant cluster needed now?
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Use GNU Parallel.
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-- Ole Tange
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New in this release:
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* Security fix. An attacker on the local system could make you overwrite one of your own files with a single byte. The problem requires:
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- you using --compress or --tmux
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- the attacker must figure out the randomly chosen file name
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- the attacker to create a symlink within a time window of 15 ms
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* GNU Parallel now has a DOI: https://dx.doi.org/10.5281/zenodo.16303
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* GNU Parallel was cited in: Scaling Machine Learning for Target Prediction in Drug Discovery using Apache Spark https://cris.cumulus.vub.ac.be/portal/files/5147244/spark.pdf
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80
src/parallel
80
src/parallel
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@ -5579,23 +5579,22 @@ sub slot {
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# cat followed by tail (possibly with rm as soon at the file is opened)
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# If $writerpid dead: finish after this round
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use Fcntl;
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$|=1;
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my ($cmd, $writerpid, $read_file, $unlink_file) = @ARGV;
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while(defined $unlink_file and not -e $unlink_file) {
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# Writer has not opened file, so we cannot open it
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$sleep = ($sleep < 30) ? ($sleep * 1.001 + 0.01) : ($sleep);
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usleep($sleep);
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}
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my ($comfile, $cmd, $writerpid, $read_file, $unlink_file) = @ARGV;
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if($read_file) {
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open(IN,"<",$read_file) || die("cattail: Cannot open $read_file");
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} else {
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*IN = *STDIN;
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}
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while(! -s $comfile) {
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# Writer has not opened the buffer file, so we cannot remove it yet
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$sleep = ($sleep < 30) ? ($sleep * 1.001 + 0.01) : ($sleep);
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usleep($sleep);
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}
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# The writer and we have both opened the file, so it is safe to unlink it
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unlink $unlink_file;
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unlink $comfile;
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my $first_round = 1;
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my $flags;
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@ -5630,8 +5629,8 @@ sub slot {
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}
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# TODO This could probably be done more efficiently using select(2)
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# Nothing read: Wait longer before next read
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# Up to 30 milliseconds
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$sleep = ($sleep < 30) ? ($sleep * 1.001 + 0.01) : ($sleep);
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# Up to 100 milliseconds
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$sleep = ($sleep < 100) ? ($sleep * 1.001 + 0.01) : ($sleep);
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usleep($sleep);
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}
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}
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@ -5741,27 +5740,29 @@ sub grouped {
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}
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}
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sub empty_input_detector {
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# If no input: exec true
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# If some input: Pass input as input to pipe
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# This avoids starting the $read command if there is no input.
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sub empty_input_wrapper {
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# If no input: exit(0)
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# If some input: Pass input as input to command on STDIN
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# This avoids starting the command if there is no input.
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# Input:
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# $command = command to pipe data to
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# Returns:
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# $cmd = script to prepend to '| ($real command)'
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# The $tmpfile might exist if run on a remote system - we accept that risk
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my ($dummy_fh, $tmpfile) = ::tmpfile(SUFFIX => ".chr");
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# Unlink to avoid leaving files if --dry-run or --sshlogin
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unlink $tmpfile;
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$Global::unlink{$tmpfile} = 1;
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my $cmd =
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# Exit value:
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# empty input = true
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# some input = exit val from command
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# sh -c needed as csh cannot hide stderr
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qq{ sh -c 'dd bs=1 count=1 of=$tmpfile 2>/dev/null'; }.
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qq{ test \! -s "$tmpfile" && rm -f "$tmpfile" && exec true; }.
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qq{ (cat $tmpfile; rm $tmpfile; cat - ) };
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return $cmd;
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# $wrapped_command = the wrapped command
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my $command = shift;
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my $script = '$c="'.::perl_quote_scalar($command).'";'.
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::spacefree(0,q{
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if(sysread(STDIN, $buf, 1)) {
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open($fh, "|-", $c) || die;
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syswrite($fh, $buf);
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while($read = sysread(STDIN, $buf, 32768)) {
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syswrite($fh, $buf);
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}
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close $fh;
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exit ($?&127 ? 128+($?&127) : 1+$?>>8)
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}
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});
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::debug("run",'Empty wrap: perl -e '.::shell_quote_scalar($script)."\n");
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return 'perl -e '.::shell_quote_scalar($script);
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}
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sub filter_through_compress {
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@ -5772,15 +5773,18 @@ sub filter_through_compress {
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my $cattail = cattail();
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for my $fdno (1,2) {
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# The tmpfile is used to tell the reader that the writer has started,
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# so unlink it to start with.
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unlink $self->fh($fdno,'name');
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my $wpid = open(my $fdw,"|-", "(".empty_input_detector().
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"| ($opt::compress_program)) >>".
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# Make a communication file.
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my ($fh, $comfile) = ::tmpfile(SUFFIX => ".pac");
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close $fh;
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# Compressor: (echo > $comfile; compress pipe) > output
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# When the echo is written to $comfile, it is known that output file is opened,
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# thus output file can then be removed by the decompressor.
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my $wpid = open(my $fdw,"|-", "(echo > $comfile; ".empty_input_wrapper($opt::compress_program).") >".
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$self->fh($fdno,'name')) || die $?;
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$self->set_fh($fdno,'w',$fdw);
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$self->set_fh($fdno,'wpid',$wpid);
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my $rpid = open(my $fdr, "-|", "perl", "-e", $cattail,
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# Decompressor: open output; -s $comfile > 0: rm $comfile output; decompress output > stdout
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my $rpid = open(my $fdr, "-|", "perl", "-e", $cattail, $comfile,
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$opt::decompress_program, $wpid,
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$self->fh($fdno,'name'),$self->fh($fdno,'unlink')) || die $?;
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$self->set_fh($fdno,'r',$fdr);
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@ -6233,8 +6237,8 @@ sub wrapped {
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# }' 0 0 0 11 |
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$command = (shift @Global::cat_partials). " | ($command)";
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} elsif($opt::pipe) {
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# Prepend EOF-detector to avoid starting $command if EOF.
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$command = empty_input_detector(). "| ($command);";
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# Wrap with EOF-detector to avoid starting $command if EOF.
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$command = empty_input_wrapper($command);
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}
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if($opt::tmux) {
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# Wrap command with 'tmux'
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@ -765,6 +765,8 @@ B<my_grp1_arg> may be run on either B<myserver1> or B<myserver2>,
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B<third_arg> may be run on either B<myserver1> or B<myserver3>,
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but B<arg_for_grp2> will only be run on B<myserver2>.
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See also: B<--sshlogin>.
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=item B<-I> I<replace-str>
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@ -1629,8 +1631,12 @@ seconds.
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=item B<-S> I<[@hostgroups/][ncpu/]sshlogin[,[@hostgroups/][ncpu/]sshlogin[,...]]>
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=item B<-S> I<@hostgroup>
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=item B<--sshlogin> I<[@hostgroups/][ncpu/]sshlogin[,[@hostgroups/][ncpu/]sshlogin[,...]]>
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=item B<--sshlogin> I<@hostgroup>
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Distribute jobs to remote computers. The jobs will be run on a list of
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remote computers.
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@ -1638,8 +1644,8 @@ If I<hostgroups> is given, the I<sshlogin> will be added to that
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hostgroup. Multiple hostgroups are separated by '+'. The I<sshlogin>
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will always be added to a hostgroup named the same as I<sshlogin>.
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If only the I<hostgroups> is given, only the sshlogins in those
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hostgroups will be used.
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If only the I<@hostgroup> is given, only the sshlogins in that
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hostgroup will be used. Multiple I<@hostgroup> can be given.
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GNU B<parallel> will determine the number of CPU cores on the remote
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computers and run the number of jobs as specified by B<-j>. If the
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@ -28,9 +28,9 @@ run_test() {
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# Check if it was cleaned up
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find /tmp -maxdepth 1 |
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perl -ne '/\.(tmb|chr|tms|par)$/ and ++$a and print "TMP NOT CLEAN. FOUND: $_".`touch '$script'`;'
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perl -ne '/\.(tmx|pac|arg|all|log|swp|loa|ssh|df|pip|tmb|chr|tms|par)$/ and ++$a and print "TMP NOT CLEAN. FOUND: $_".`touch '$script'`;'
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# May be owned by other users
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sudo rm -f /tmp/*.{tmb,chr,tms,par}
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sudo rm -f /tmp/*.{tmx,pac,arg,all,log,swp,loa,ssh,df,pip,tmb,chr,tms,par}
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}
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export -f run_test
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@ -266,7 +266,6 @@ echo 'bug #44250: pxz complains File format not recognized but decompresses anyw
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bug #44250: pxz complains File format not recognized but decompresses anyway
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# The first line dumps core if run from make file. Why?!
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stdout parallel --compress --compress-program pxz ls /{} ::: OK-if-missing-file
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Segmentation fault (core dumped)
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parallel: Error: pxz failed.
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stdout parallel --compress --compress-program pixz --decompress-program 'pixz -d' ls /{} ::: OK-if-missing-file
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ls: cannot access /OK-if-missing-file: No such file or directory
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@ -931,7 +931,7 @@ This helps funding further development; and it won't cost you a cent.
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If you pay 10000 EUR you should feel free to use GNU Parallel without citing.
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parallel --version
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GNU parallel 20150415
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GNU parallel 20150416
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Copyright (C) 2007,2008,2009,2010,2011,2012,2013,2014,2015 Ole Tange
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and Free Software Foundation, Inc.
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License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
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@ -943,7 +943,7 @@ Web site: http://www.gnu.org/software/parallel
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When using programs that use GNU Parallel to process data for publication
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please cite as described in 'parallel --bibtex'.
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parallel --minversion 20130722 && echo Your version is at least 20130722.
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20150415
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20150416
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Your version is at least 20130722.
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parallel --bibtex
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Academic tradition requires you to cite works you base your article on.
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