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parallel: --no-keep-order will reverse --keep-order. --no-notice => --will-cite.
This commit is contained in:
Ole Tange
parent
2c3fd52197
commit
ca03efde42
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@ -57,6 +57,8 @@ pushd
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== Upload ==
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eval `gpg-agent --daemon`
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YYYYMMDD=`yyyymmdd`
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cp parallel-$YYYYMMDD.tar.bz2 parallel-latest.tar.bz2
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cp doc/parallel.directive parallel-$YYYYMMDD.tar.bz2.directive
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@ -158,7 +160,7 @@ git diff
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git commit -a
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Released as 20140x22 ('').
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Released as 20150x22 ('').
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TAG=MyTag
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YYYYMMDD=`yyyymmdd`
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@ -226,7 +228,7 @@ cc:Tim Cuthbertson <tim3d.junk@gmail.com>,
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Ryoichiro Suzuki <ryoichiro.suzuki@gmail.com>,
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Jesse Alama <jesse.alama@gmail.com>
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Subject: GNU Parallel 20150122 ('Manila QZ8501') released
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Subject: GNU Parallel 20150122 (' (((:~{> Hebdo Manila QZ8501') released
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GNU Parallel 20150122 ('Hebdo Manila QZ8501') has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/
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@ -236,20 +238,46 @@ Haiku of the month:
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New in this release:
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* Remote jobs now sends stderr (standard error) to stderr (standard error) instead of stdout (standard output)
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* Remote jobs now send stderr (standard error) to stderr (standard error) instead of stdout (standard output).
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* Remote execution is now packed using hex encoded bzip2. That means that big environments (app. 250 KB) can be transferred. This change makes remote execution alpha quality.
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* Remote execution command is now packed using hex encoded bzip2. This means that big environments (app. 250 KB) can be transferred. This change makes remote execution alpha quality.
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* --semaphoretimeout now takes a negative value. This means give up if the semaphore is not gotten within the timeout.
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* --halt -1 and -2 now means halt if a job succeeds (so the opposite of 1 and 2).
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* Bash's second fix of shellshock caused --env to break again when exporting functions. This has been fixed again.
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* A semibig refactoring of big functions. All non-trivial functions are now less than 100 lines. The refactoring makes this release beta quality.
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* GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for the Histological Quantification of Whole Slide Images http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289
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* GNU Parallel was cited in: Improving Energy and Performance with Spintronics Caches in Multicore Systems http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24
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* GNU Parallel was cited in: Parallel post-processing with MPI-Bash http://dl.acm.org/citation.cfm?id=2691137
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* GNU Parallel was cited in: Distinguishing cause from effect using observational data: methods and benchmarks http://arxiv-web3.library.cornell.edu/pdf/1412.3773.pdf
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* GNU Parallel was cited in: Bayesian Inference of Protein Structure from Chemical Shift Data https://peerj.com/preprints/692.pdf
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* GNU Parallel was cited in: Data Science at the Command Line http://cdn.oreillystatic.com/oreilly/booksamplers/9781491947852_sampler.pdf
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* GNU Parallel was cited in: Speaker environment classification using rhythm metrics in Levantine Arabic dialect http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=6923918
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* GNU Parallel was cited in: Resolution of Genetic Map Expansion Caused by Excess Heterozygosity in Plant Recombinant Inbred Populations http://www.g3journal.org/content/4/10/1963.full.pdf
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* GNU Parallel was cited in: Bayesian Inference of Protein Structure from Chemical Shift Data https://peerj.com/preprints/692v1.pdf
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* GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003
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* GNU Parallel was cited in: Web-scale content reuse detection ftp://info.isi.edu/isi-pubs/tr-692.pdf
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* GNU Parallel was cited in: Computação Verde na Camada de Aplicação https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf
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* GNU Parallel was cited in: Frameshift alignment: statistics and post-genomic applications http://bioinformatics.oxfordjournals.org/content/30/24/3575.full.pdf+html
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* GNU Parallel was cited in: Towards Recommender Engineering Tools and Experiments for Identifying Recommender Differences http://elehack.net/research/thesis/mde-thesis.pdf
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* GNU Parallel: Open Source For You (OSFY) magazine, October 2013 edition http://www.shakthimaan.com/posts/2014/11/27/gnu-parallel/news.html
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* Multithreaded Encryption and Compression http://www.krazyworks.com/multithreaded-encryption-and-compression/
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@ -258,6 +286,8 @@ New in this release:
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* How to build gnu parallel from source on Ubuntu PC? http://blog.ovidiuparvu.com/build-gnu-parallel-source-ubuntu-pc/
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* GNU parallel for openaddr-process-one https://nelsonslog.wordpress.com/2015/01/09/gnu-parallel-for-openaddr-process-one/
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* From SRA Project to FastQ http://danielecook.com/sra-project-fastq/
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* コマンドを並列に実行するGNU parallelがとても便利 http://bicycle1885.hatenablog.com/entry/2014/08/10/143612
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30
src/parallel
30
src/parallel
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@ -600,8 +600,8 @@ sub options_hash {
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"resume" => \$opt::resume,
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"resume-failed|resumefailed" => \$opt::resume_failed,
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"silent" => \$opt::silent,
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#"silent-error|silenterror" => \$opt::silent_error,
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"keep-order|keeporder|k" => \$opt::keeporder,
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"no-keep-order|nokeeporder|nok|no-k" => \$opt::nokeeporder,
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"group" => \$opt::group,
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"g" => \$opt::retired,
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"ungroup|u" => \$opt::ungroup,
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@ -681,10 +681,10 @@ sub options_hash {
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"files|output-as-files|outputasfiles" => \$opt::files,
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"block|block-size|blocksize=s" => \$opt::blocksize,
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"tollef" => \$opt::retired,
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"gnu" => \$opt::gnu,
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"gnu" => \$opt::ignored_option,
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"xapply" => \$opt::xapply,
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"bibtex" => \$opt::bibtex,
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"nn|nonotice|no-notice" => \$opt::no_notice,
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"wc|willcite|will-cite|nn|nonotice|no-notice" => \$opt::willcite,
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"memfree=s" => \$opt::memfree,
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# xargs-compatibility - implemented, man, testsuite
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"max-procs|P=s" => \$opt::jobs,
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@ -774,6 +774,10 @@ sub parse_options {
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init_globals();
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@ARGV=read_options();
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# no-* overrides *
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if($opt::nokeeporder) { $opt::keeporder = undef; }
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if($opt::noctrlc) { $opt::ctrlc = undef; }
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if(@opt::v) { $Global::verbose = $#opt::v+1; } # Convert -v -v to v=2
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$Global::debug = $opt::D;
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$Global::shell = $ENV{'PARALLEL_SHELL'} || parent_shell($$) || $ENV{'SHELL'} || "/bin/sh";
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@ -2699,7 +2703,7 @@ sub onall {
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(@opt::env ? map { "--env ".::shell_quote_scalar($_) } @opt::env : ""),
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);
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::debug("init", "| $0 $options\n");
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open(my $parallel_fh, "|-", "$0 --no-notice -j0 $options") ||
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open(my $parallel_fh, "|-", "$0 --will-cite -j0 $options") ||
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::die_bug("This does not run GNU Parallel: $0 $options");
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my @joblogs;
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for my $host (sort keys %Global::host) {
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@ -2914,11 +2918,11 @@ sub usage {
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sub citation_notice {
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# if --no-notice or --plain: do nothing
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# if --will-cite or --plain: do nothing
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# if stderr redirected: do nothing
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# if ~/.parallel/will-cite: do nothing
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# else: print citation notice to stderr
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if($opt::no_notice
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if($opt::willcite
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or
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$opt::plain
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or
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@ -2937,7 +2941,7 @@ sub citation_notice {
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"This helps funding further development; and it won't cost you a cent.\n",
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"If you pay 10000 EUR you should feel free to use GNU Parallel without citing.\n",
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"\n",
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"To silence this citation notice run 'parallel --bibtex' once or use '--no-notice'.\n\n",
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"To silence this citation notice run 'parallel --bibtex' once or use '--will-cite'.\n\n",
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);
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}
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}
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@ -2979,9 +2983,6 @@ sub die_bug {
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sub version {
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# Returns: N/A
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if($opt::tollef and not $opt::gnu) {
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print "WARNING: YOU ARE USING --tollef. IF THINGS ARE ACTING WEIRD USE --gnu.\n";
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}
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print join("\n",
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"GNU $Global::progname $Global::version",
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"Copyright (C) 2007,2008,2009,2010,2011,2012,2013,2014,2015 Ole Tange",
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@ -2998,9 +2999,6 @@ sub version {
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sub bibtex {
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# Returns: N/A
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if($opt::tollef and not $opt::gnu) {
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print "WARNING: YOU ARE USING --tollef. IF THINGS ARE ACTING WEIRD USE --gnu.\n";
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}
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print join("\n",
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"Academic tradition requires you to cite works you base your article on.",
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"When using programs that use GNU Parallel to process data for publication please cite:",
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@ -3022,8 +3020,10 @@ sub bibtex {
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"",
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"This helps funding further development.",
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"",
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"If you pay 10000 EUR you should feel free to use GNU Parallel without citing.\n",
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""
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"If you pay 10000 EUR you should feel free to use GNU Parallel without citing.",
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"",
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"If you send a copy of your published article to tange\@gnu.org, it will be",
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"mentioned in the release notes of next version of GNU Parallel.\n\n",
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);
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while(not -e $ENV{'HOME'}."/.parallel/will-cite") {
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print "\nType: 'will cite' and press enter.\n> ";
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@ -4263,6 +4263,9 @@ change your alias to a script.
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Report bugs to <bug-parallel@gnu.org> or
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https://savannah.gnu.org/bugs/?func=additem&group=parallel
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See a perfect bug report on
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https://lists.gnu.org/archive/html/bug-parallel/2015-01/msg00000.html
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Your bug report should always include:
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=over 2
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