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Released as 20171222 ('Jerusalem')

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This commit is contained in:
Ole Tange 2017-12-23 00:58:02 +01:00
parent da545d53ff
commit d9bac1136f
12 changed files with 68 additions and 38 deletions
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22
NEWS
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@ -1,3 +1,25 @@
20171222
* env_parset for ash, dash, ksh, sh, zsh
* Automatically create hostgroups if argument ends in @sshlogin
* Tips for running jobs on your VM
https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
* Node-local scheduling
https://mogonwiki.zdv.uni-mainz.de/dokuwiki/node_local_scheduling
* GNU Parallel https://docs.computecanada.ca/wiki/GNU_Parallel
* GNU Parallel のエラー処理 https://qiita.com/inouet/items/bfc208668c86caf8ff74
* Using GNU Parallel
https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
* Bug fixes and man page updates.
20171122
* Using GNU Parallel to speed up Google Cloud Infrastructure

12
README
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@ -44,9 +44,9 @@ document.
Full installation of GNU Parallel is as simple as:
wget http://ftpmirror.gnu.org/parallel/parallel-20171122.tar.bz2
bzip2 -dc parallel-20171122.tar.bz2 | tar xvf -
cd parallel-20171122
wget http://ftpmirror.gnu.org/parallel/parallel-20171222.tar.bz2
bzip2 -dc parallel-20171222.tar.bz2 | tar xvf -
cd parallel-20171222
./configure && make && sudo make install
@ -55,9 +55,9 @@ Full installation of GNU Parallel is as simple as:
If you are not root you can add ~/bin to your path and install in
~/bin and ~/share:
wget http://ftpmirror.gnu.org/parallel/parallel-20171122.tar.bz2
bzip2 -dc parallel-20171122.tar.bz2 | tar xvf -
cd parallel-20171122
wget http://ftpmirror.gnu.org/parallel/parallel-20171222.tar.bz2
bzip2 -dc parallel-20171222.tar.bz2 | tar xvf -
cd parallel-20171222
./configure --prefix=$HOME && make && make install
Or if your system lacks 'make' you can simply copy src/parallel

20
configure vendored
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@ -1,6 +1,6 @@
#! /bin/sh
# Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for parallel 20171122.
# Generated by GNU Autoconf 2.69 for parallel 20171222.
#
# Report bugs to <bug-parallel@gnu.org>.
#
@ -579,8 +579,8 @@ MAKEFLAGS=
# Identity of this package.
PACKAGE_NAME='parallel'
PACKAGE_TARNAME='parallel'
PACKAGE_VERSION='20171122'
PACKAGE_STRING='parallel 20171122'
PACKAGE_VERSION='20171222'
PACKAGE_STRING='parallel 20171222'
PACKAGE_BUGREPORT='bug-parallel@gnu.org'
PACKAGE_URL=''
@ -1214,7 +1214,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF
\`configure' configures parallel 20171122 to adapt to many kinds of systems.
\`configure' configures parallel 20171222 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]...
@ -1281,7 +1281,7 @@ fi
if test -n "$ac_init_help"; then
case $ac_init_help in
short | recursive ) echo "Configuration of parallel 20171122:";;
short | recursive ) echo "Configuration of parallel 20171222:";;
esac
cat <<\_ACEOF
@ -1357,7 +1357,7 @@ fi
test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then
cat <<\_ACEOF
parallel configure 20171122
parallel configure 20171222
generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc.
@ -1374,7 +1374,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by parallel $as_me 20171122, which was
It was created by parallel $as_me 20171222, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@
@ -2237,7 +2237,7 @@ fi
# Define the identity of the package.
PACKAGE='parallel'
VERSION='20171122'
VERSION='20171222'
cat >>confdefs.h <<_ACEOF
@ -2880,7 +2880,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their
# values after options handling.
ac_log="
This file was extended by parallel $as_me 20171122, which was
This file was extended by parallel $as_me 20171222, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES
@ -2942,7 +2942,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\
parallel config.status 20171122
parallel config.status 20171222
configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\"

2
configure.ac
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@ -1,4 +1,4 @@
AC_INIT([parallel], [20171122], [bug-parallel@gnu.org])
AC_INIT([parallel], [20171222], [bug-parallel@gnu.org])
AM_INIT_AUTOMAKE([-Wall -Werror foreign])
AC_CONFIG_HEADERS([config.h])
AC_CONFIG_FILES([

22
doc/release_new_version
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@ -210,15 +210,19 @@ Haiku of the month:
New in this release:
parset for ksh, zsh,
auto hostgroups with arg@sshlogin
https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
https://mogonwiki.zdv.uni-mainz.de/dokuwiki/node_local_scheduling
https://docs.computecanada.ca/wiki/GNU_Parallel
https://qiita.com/inouet/items/bfc208668c86caf8ff74
https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
https://github.com/LangilleLab/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
https://docs.computecanada.ca/wiki/GNU_Parallel
* env_parset for ash, dash, ksh, sh, zsh
* Automatically create hostgroups if argument ends in @sshlogin
* Tips for running jobs on your VM https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
* Node-local scheduling https://mogonwiki.zdv.uni-mainz.de/dokuwiki/node_local_scheduling
* GNU Parallel https://docs.computecanada.ca/wiki/GNU_Parallel
* GNU Parallel のエラー処理 https://qiita.com/inouet/items/bfc208668c86caf8ff74
* Using GNU Parallel https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
<<Citation not OK: BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing https://www.nature.com/articles/s41598-017-01703-6>>

10
packager/obs/home:tange/parallel/.osc/_files
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@ -1,6 +1,6 @@
<directory name="parallel" rev="213" srcmd5="b33d40e54bb515002e8212b825522d4f" vrev="2">
<entry md5="5f316869853f6f4f86f954cc88f13dc4" mtime="1511389325" name="parallel-20171122.tar.bz2" size="1662066" />
<entry md5="531182fb80891963b07376e7aa2c89ce" mtime="1511389325" name="parallel.spec" size="4693" />
<entry md5="bb935911fac43c4d07eaf3e5fc9d9dc9" mtime="1511389326" name="parallel_20171122.dsc" size="556" />
<entry md5="f6e6b1707658e3040e881c073d8f5557" mtime="1511389326" name="parallel_20171122.tar.gz" size="1868461" />
<directory name="parallel" rev="214" srcmd5="2516655d54c763928fd9f97014e11540" vrev="1">
<entry md5="8b44ef3f5aac2302f976cb58cf61fe87" mtime="1513986752" name="parallel-20171222.tar.bz2" size="1690096" />
<entry md5="5f4277facf3f4777b0cea688027954a3" mtime="1513986752" name="parallel.spec" size="4693" />
<entry md5="ca877325712ba2d1f5906548427de534" mtime="1513986752" name="parallel_20171222.dsc" size="556" />
<entry md5="21420e5e8a3c415584438286cb2cdcaf" mtime="1513986753" name="parallel_20171222.tar.gz" size="1894418" />
</directory>

8
packager/obs/home:tange/parallel/.osc/_meta
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@ -36,15 +36,19 @@ GNU niceload slows down a program when the computer load average (or other syste
<person userid="tange" role="bugowner"/>
<person userid="tange" role="maintainer"/>
<build>
<enable repository="CentOS_CentOS-5"/>
<enable repository="Debian_5.0"/>
<enable repository="Debian_Etch"/>
<enable repository="Fedora_12"/>
<enable/>
<disable arch="ppc64"/>
<disable arch="ppc" repository="CentOS_CentOS-5"/>
<disable arch="ppc64" repository="Debian_5.0"/>
<disable arch="ppc" repository="images"/>
<disable arch="ppc64" repository="CentOS_CentOS-5"/>
<disable arch="ppc" repository="RedHat_RHEL-5"/>
<disable arch="ppc" repository="SLE_10_SDK"/>
<disable arch="ppc" repository="SLE_11"/>
<disable arch="ppc" repository="SLE_11_SP1"/>
<disable arch="ppc" repository="openSUSE_Factory"/>
</build>
<debuginfo>
<disable/>

2
packager/obs/home:tange/parallel/.osc/parallel.spec
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@ -1,6 +1,6 @@
Summary: Shell tool for executing jobs in parallel
Name: parallel
Version: 20171122
Version: 20171222
Release: 1.2
License: GPL
Group: Productivity/File utilities

2
packager/obs/home:tange/parallel/parallel.spec
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@ -1,6 +1,6 @@
Summary: Shell tool for executing jobs in parallel
Name: parallel
Version: 20171122
Version: 20171222
Release: 1.2
License: GPL
Group: Productivity/File utilities

2
src/niceload
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@ -24,7 +24,7 @@
use strict;
use Getopt::Long;
$Global::progname="niceload";
$Global::version = 20171123;
$Global::version = 20171222;
Getopt::Long::Configure("bundling","require_order");
get_options_from_array(\@ARGV) || die_usage();
if($opt::version) {

2
src/parallel
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@ -1387,7 +1387,7 @@ sub check_invalid_option_combinations {
sub init_globals {
# Defaults:
$Global::version = 20171123;
$Global::version = 20171222;
$Global::progname = 'parallel';
$Global::infinity = 2**31;
$Global::debug = 0;

2
src/sql
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@ -576,7 +576,7 @@ $Global::Initfile && unlink $Global::Initfile;
exit ($err);
sub parse_options {
$Global::version = 20171123;
$Global::version = 20171222;
$Global::progname = 'sql';
# This must be done first as this may exec myself