mirror of
https://git.savannah.gnu.org/git/parallel.git
synced 2024-11-22 05:57:54 +00:00
parallel: Added difference between paexec
This commit is contained in:
Ole Tange
parent
59cb631264
commit
e06f6d52ce
20
configure
vendored
20
configure
vendored
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@ -1,6 +1,6 @@
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#! /bin/sh
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# Guess values for system-dependent variables and create Makefiles.
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# Generated by GNU Autoconf 2.67 for parallel 20100906.
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# Generated by GNU Autoconf 2.67 for parallel 20100922.
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#
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# Report bugs to <bug-parallel@gnu.org>.
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#
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@ -551,8 +551,8 @@ MAKEFLAGS=
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# Identity of this package.
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PACKAGE_NAME='parallel'
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PACKAGE_TARNAME='parallel'
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PACKAGE_VERSION='20100906'
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PACKAGE_STRING='parallel 20100906'
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PACKAGE_VERSION='20100922'
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PACKAGE_STRING='parallel 20100922'
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PACKAGE_BUGREPORT='bug-parallel@gnu.org'
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PACKAGE_URL=''
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@ -1168,7 +1168,7 @@ if test "$ac_init_help" = "long"; then
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# Omit some internal or obsolete options to make the list less imposing.
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# This message is too long to be a string in the A/UX 3.1 sh.
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cat <<_ACEOF
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\`configure' configures parallel 20100906 to adapt to many kinds of systems.
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\`configure' configures parallel 20100922 to adapt to many kinds of systems.
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Usage: $0 [OPTION]... [VAR=VALUE]...
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@ -1234,7 +1234,7 @@ fi
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if test -n "$ac_init_help"; then
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case $ac_init_help in
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short | recursive ) echo "Configuration of parallel 20100906:";;
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short | recursive ) echo "Configuration of parallel 20100922:";;
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esac
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cat <<\_ACEOF
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@ -1301,7 +1301,7 @@ fi
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test -n "$ac_init_help" && exit $ac_status
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if $ac_init_version; then
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cat <<\_ACEOF
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parallel configure 20100906
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parallel configure 20100922
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generated by GNU Autoconf 2.67
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Copyright (C) 2010 Free Software Foundation, Inc.
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@ -1318,7 +1318,7 @@ cat >config.log <<_ACEOF
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This file contains any messages produced by compilers while
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running configure, to aid debugging if configure makes a mistake.
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It was created by parallel $as_me 20100906, which was
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It was created by parallel $as_me 20100922, which was
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generated by GNU Autoconf 2.67. Invocation command line was
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$ $0 $@
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@ -2133,7 +2133,7 @@ fi
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# Define the identity of the package.
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PACKAGE='parallel'
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VERSION='20100906'
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VERSION='20100922'
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cat >>confdefs.h <<_ACEOF
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@ -2684,7 +2684,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
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# report actual input values of CONFIG_FILES etc. instead of their
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# values after options handling.
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ac_log="
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This file was extended by parallel $as_me 20100906, which was
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This file was extended by parallel $as_me 20100922, which was
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generated by GNU Autoconf 2.67. Invocation command line was
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CONFIG_FILES = $CONFIG_FILES
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@ -2746,7 +2746,7 @@ _ACEOF
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cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
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ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
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ac_cs_version="\\
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parallel config.status 20100906
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parallel config.status 20100922
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configured by $0, generated by GNU Autoconf 2.67,
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with options \\"\$ac_cs_config\\"
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@ -1,4 +1,4 @@
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AC_INIT([parallel], [20100906], [bug-parallel@gnu.org])
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AC_INIT([parallel], [20100922], [bug-parallel@gnu.org])
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AM_INIT_AUTOMAKE([-Wall -Werror foreign])
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AC_CONFIG_HEADERS([config.h])
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AC_CONFIG_FILES([
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@ -1,25 +1,10 @@
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== Retry ==
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Bugfix: --keeporder with -j100% mixed up order of first job
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parallel: Unittest for --retries
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== FSCONS ==
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Annoncer foredrag til FSCONS
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I will be at FSCONS 2010-11-07 talking about GNU Parallel.
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http://www.fscons.org/fs/gnu-parallel
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== SQL ==
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Example with %0a as newline
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sql :pg_foo?'\dt %0a SELECT * FROM users'
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sql :my_postgres?'\dt %0a SELECT * FROM users'
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cat ~/.sql/aliases | parallel --colsep '\s' sql {1} '"select 0.14159+3;" | grep -q 3.14159 || (echo dead: {1}; exit 1)'
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--list-tables
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select OBJECT_NAME from user_objects where object_type = 'TABLE';
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== FEX ==
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fex syntax for splitting fields
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@ -44,7 +44,7 @@ cp parallel-$YYYYMMDD.tar.bz2 /tmp
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cd /tmp
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tar xjvf parallel-$YYYYMMDD.tar.bz2
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cd parallel-$YYYYMMDD
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./configure && make && sudo make install
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./configure && make -j && sudo make -j install
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== Upload ==
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@ -70,6 +70,7 @@ make -j && sudo make -j install
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== Update OpenSUSE build system ==
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https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
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cd ~/privat/parallel/packager/obs ; make
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== Update Savannah ==
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7
packager/obs/Makefile
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7
packager/obs/Makefile
Normal file
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@ -0,0 +1,7 @@
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all:
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# cd ../debian/ && make
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# cp ../debian/parallel_*.dsc ../debian/parallel_*.tar.gz home\:tange/parallel/
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cp `ls ../../parallel-*.tar.bz2|tail -n1` home\:tange/parallel/
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cd home\:tange/parallel/ && osc up && osc add *.dsc *.tar.gz && osc ci
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1
packager/obs/README
Normal file
1
packager/obs/README
Normal file
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@ -0,0 +1 @@
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https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
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105
src/parallel
105
src/parallel
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@ -1542,8 +1542,8 @@ Outputs
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O2. Send stderr to stderr
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O3. Send stdout to stdout
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O4. Order of output can be same as order of input
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O5. Stdout only from the command
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O6. Stderr only from the command
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O5. Stdout only contains stdout from the command
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O6. Stderr only contains stdout from the command
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Inputs
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I1. Arguments can be read from stdin
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@ -1571,6 +1571,7 @@ Remote execution
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R6. No config files needed
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R7. Do not run more than SSHD's MaxStartup can handle
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R8. Configurable SSH command
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R9. Retry if connection breaks occationally
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Semaphore
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S1. Possibility to work as a mutex
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@ -1582,37 +1583,47 @@ Legend
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ID = yes
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As every new version of the programs are not tested the table may be
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outdated. Please file a bug-report if you find errors.
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outdated. Please file a bug-report if you find errors (See REPORTING
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BUGS).
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parallel: E1 E2 E3 E4 E5 O1 O2 O3 O4 O5 O6 I1 I2 I3 I4 I5 I6 I7 M1 M2
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M3 M4 M5 M6 R1 R2 R3 R4 R5 R6 R7 R8 S1 S2
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M3 M4 M5 M6 R1 R2 R3 R4 R5 R6 R7 R8 R9 S1 S2
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xargs: E1 - - - - - O2 O3 - O5 O6 I1 I2 - - - - - - M2 M3 -
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- - - - - - - x - - -
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- - - - - - - x - - - -
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find -exec: - - - x - x O2 O3 O4 O5 O6 - - - - - - - - M2 M3 -
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- - - - - - - - - x x
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- - - - - - - - - - x x
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make -j: E1 - - - E5 O1 O2 O3 - x O6 - - - - - - - - - - - - - - - - - -
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- - -
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- - - -
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ppss: E1 E2 ?E3 E4 - O1 - - x - - I1 I2 - - - - I7 M1 - M3 - - M6 R1 R2
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R3 R4 - - ?R7 - -
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R3 R4 - - ?R7 ? ? - -
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pexec: E1 - - E4 - O1 O2 O3 - O5 O6 I1 I2 - I4 I5 - - M1 - M3 - - M6 R1
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- - - - R6 - S1 -
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- - - - R6 - - - S1 -
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xjobs: TODO
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xjobs: TODO - Please file a bug-report if you know what features xjobs
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supports (See REPORTING BUGS).
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prll: TODO
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prll: TODO - Please file a bug-report if you know what features prll
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supports (See REPORTING BUGS).
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dxargs: TODO
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dxargs: TODO - Please file a bug-report if you know what features dxargs
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supports (See REPORTING BUGS).
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mdm/middelman: TODO
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mdm/middelman: TODO - Please file a bug-report if you know what
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features mdm/middelman supports (See REPORTING BUGS).
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xapply: TODO
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xapply: TODO - Please file a bug-report if you know what features xapply
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supports (See REPORTING BUGS).
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ClusterSSH: TODO
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paexec: TODO - Please file a bug-report if you know what features paexec
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supports (See REPORTING BUGS).
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ClusterSSH: TODO - Please file a bug-report if you know what features ClusterSSH
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supports (See REPORTING BUGS).
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=head2 DIFFERENCES BETWEEN xargs AND GNU Parallel
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@ -1876,7 +1887,7 @@ echo unzip 1.zip >> /var/run/my_named_pipe;
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echo tar cf /backup/myhome.tar /home/me >> /var/run/my_named_pipe
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=head2 DIFFERENCES BETWEEN prll AND GNU parallel
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=head2 DIFFERENCES BETWEEN prll AND GNU Parallel
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B<prll> is also a tool for running jobs in parallel. It does not
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support running jobs on remote computers.
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@ -1979,6 +1990,51 @@ B<11> xapply -f '[ -f %1 ] && echo %1' List | ...
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B<11> parallel '[ -f {} ] && echo {}' < List | ...
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=head2 DIFFERENCES BETWEEN paexec AND GNU Parallel
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B<paexec> can run jobs in parallel on both the local and remote computers.
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B<paexec> requires commands to print a blank line as the last
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output. This means you will have to write a wrapper for most programs.
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B<paexec> has a job dependency facility so a job can depend on another
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job to be executed successfully. Sort of a poor-man's B<make>.
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Here are the examples from B<paexec>'s example catalog with the equivalent
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using GNU B<parallel>:
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=over 1
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=item 1_div_X_run:
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../../paexec -s -l -c "`pwd`/1_div_X_cmd" -n +1 <<EOF [...]
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parallel echo {} '|' `pwd`/1_div_X_cmd <<EOF [...]
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=item all_substr_run:
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../../paexec -lp -c "`pwd`/all_substr_cmd" -n +3 <<EOF [...]
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parallel echo {} '|' `pwd`/all_substr_cmd <<EOF [...]
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=item cc_wrapper_run:
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../../paexec -c "env CC=gcc CFLAGS=-O2 `pwd`/cc_wrapper_cmd" \
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-n 'host1 host2' \
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-t '/usr/bin/ssh -x' <<EOF [...]
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parallel echo {} '|' "env CC=gcc CFLAGS=-O2 `pwd`/cc_wrapper_cmd" \
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-S host1,host2 <<EOF [...]
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# This is not exactly the same, but avoids the wrapper
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parallel gcc -O2 -c -o {.}.o {} \
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-S host1,host2 <<EOF [...]
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=item toupper_run:
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../../paexec -lp -c "`pwd`/toupper_cmd" -n +10 <<EOF [...]
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parallel echo {} '|' ./toupper_cmd <<EOF [...]
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# Without the wrapper:
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parallel echo {} '| awk {print\ toupper\(\$0\)}' <<EOF [...]
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=back
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=head2 DIFFERENCES BETWEEN ClusterSSH AND GNU Parallel
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ClusterSSH solves a different problem than GNU B<parallel>.
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@ -1993,7 +2049,7 @@ computing. If more than one machine is listed in B<-S> GNU B<parallel> may
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only use one of these (e.g. if there are 8 jobs to be run and one
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machine has 8 cores).
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GNU B<parallel> can be used as a poor-mans version of ClusterSSH:
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GNU B<parallel> can be used as a poor-man's version of ClusterSSH:
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B<cat hostlist | parallel ssh {} do_stuff>
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@ -2012,9 +2068,16 @@ echo 1,2,3 | parallel -vkd, echo a{}
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=head2 Startup speed
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GNU B<parallel> is slow at starting up. Half of the startup time is
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spent finding the maximal length of a command line. Setting B<-s> will
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remove this part of the startup time.
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GNU B<parallel> is slow at starting up. Half of the startup time on
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the local computer is spent finding the maximal length of a command
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line. Setting B<-s> will remove this part of the startup time.
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When using multiple computers GNU B<parallel> opens B<ssh> connections
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to them to figure out how many connections can be used reliably
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simultaneously (Namely SSHD's MaxStartup). This test is done for each
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host in serial, so if your --sshloginfile contains many hosts it may
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be slow.
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=head1 REPORTING BUGS
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@ -2215,7 +2278,7 @@ sub acquire_semaphore {
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sub parse_options {
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# Returns: N/A
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# Defaults:
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$Global::version = 20100906;
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$Global::version = 20100922;
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$Global::progname = 'parallel';
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$Global::debug = 0;
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$Global::verbose = 0;
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2
src/sql
2
src/sql
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@ -452,7 +452,7 @@ $Global::Initfile && unlink $Global::Initfile;
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exit ($err);
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sub parse_options {
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$Global::version = 20100914;
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$Global::version = 20100922;
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$Global::progname = 'sql';
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# This must be done first as this may exec myself
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20
unittest/tests-to-run/test32.sh
Normal file
20
unittest/tests-to-run/test32.sh
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@ -0,0 +1,20 @@
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#!/bin/bash
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echo '### Test of --retries'
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seq 1 10 | parallel --retries 2 -v -S 4.3.2.1,: echo
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echo '### Test of --retries - it should run 13 jobs in total'
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seq 0 12 | parallel --progress -kj100% --retries 1 -S 12/nlv.pi.dk,1/:,parallel@server2 -vq \
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perl -e 'sleep 1;print "job{}\n";exit({})' | tail -n1 | \
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perl -ne '@a=(split /\//,$_); print $a[1]+$a[4]+$a[7],"\n"'
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echo '### Test of --retries - it should run 25 jobs in total'
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seq 0 12 | parallel --progress -kj100% --retries 2 -S 12/nlv.pi.dk,1/:,parallel@server2 -vq \
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perl -e 'sleep 1;print "job{}\n";exit({})' | tail -n1 | \
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perl -ne '@a=(split /\//,$_); print $a[1]+$a[4]+$a[7],"\n"'
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echo '### Test of --retries - it should run 49 jobs in total'
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seq 0 12 | parallel --progress -kj100% --retries 4 -S 12/nlv.pi.dk,1/:,parallel@server2 -vq \
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perl -e 'sleep 1;print "job{}\n";exit({})' | tail -n1 | \
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perl -ne '@a=(split /\//,$_); print $a[1]+$a[4]+$a[7],"\n"'
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