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Fixed bug #45144: Does not work on Solaris "zone" containers.

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Ole Tange 2015-05-21 23:32:15 +02:00
parent 09fccc68fc
commit e64461941b
2 changed files with 26 additions and 9 deletions
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31
doc/release_new_version
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@ -209,10 +209,12 @@ cc:Tim Cuthbertson <tim3d.junk@gmail.com>,
Ryoichiro Suzuki <ryoichiro.suzuki@gmail.com>, Ryoichiro Suzuki <ryoichiro.suzuki@gmail.com>,
Jesse Alama <jesse.alama@gmail.com> Jesse Alama <jesse.alama@gmail.com>
Subject: GNU Parallel 20150522 ('Nepal') released Subject: GNU Parallel 20150522 ('Nepal') released [stable]
GNU Parallel 20150522 ('Nepal') has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/ GNU Parallel 20150522 ('Nepal') has been released. It is available for download at: http://ftp.gnu.org/gnu/parallel/
No new functionality was introduced so this is a good candidate for a stable release.
Haiku of the month: Haiku of the month:
Many jobs to run. Many jobs to run.
@ -222,31 +224,42 @@ Haiku of the month:
New in this release: New in this release:
* <<afventer - rykket >> Comparing the CarbonTracker and TM5-4DVar data assimilation systems for CO2 surface flux inversions http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html * Security: The security issue for --sshlogin + --fifo/--cat has been fixed. Thereby all issues with http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html have been fixed.
* <<afventer opdatering>> CIDER: a pipeline for detecting waves of coordinated transcriptional regulation in gene expression time-course data http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf * Security: After further security analysis the issue fixed in 20150422 also fixed the problem for --tmux.
* GNU Parallel was cited in: CIDER: a pipeline for detecting waves of coordinated transcriptional regulation in gene expression time-course data http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
* <<afventer opdatering>> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345 * GNU Parallel was cited in: Building Genomic Analysis Pipelines in a Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics, Metagenomics and RNA-seq http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf
taxator-tk http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/ (check it) * GNU Parallel was cited in: Toward Enhanced Metadata Quality of Large-Scale Digital Libraries: Estimating Volume Time Range https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
* << afventer svar fra Rachel >> GNU Parallel was used in: SISRS: Site Identification from Short Read Sequences https://github.com/rachelss/SISRS/
* GNU Parallel was cited in: Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf * GNU Parallel was cited in: Sequencing the cap-snatching repertoire of H1N1 influenza provides insight into the mechanism of viral transcription initiation http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf
* GNU Parallel was cited in: Genome assemblyusing Nanopore-guided long and error-free DNA reads http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf * GNU Parallel was cited in: Genome assembly using Nanopore-guided long and error-free DNA reads http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf
* GNU Parallel was cited in: Contrasting regional architectures of schizophrenia and other complex diseases using fast variance components analysis http://biorxiv.org/content/biorxiv/early/2015/03/13/016527.full.pdf * GNU Parallel was cited in: Contrasting regional architectures of schizophrenia and other complex diseases using fast variance components analysis http://biorxiv.org/content/biorxiv/early/2015/03/13/016527.full.pdf
* <<kontakt>> GNU Parallel was used (unfortunately with wrong citation) in: TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics http://vruehle.de/publications/2015c.pdf * GNU Parallel was used (unfortunately with wrong citation) in: Comparing the CarbonTracker and TM5-4DVar data assimilation systems for CO2 surface flux inversions http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
* GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method https://bitbucket.org/srp33/gsoa * GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method https://bitbucket.org/srp33/gsoa
* A Quick and Neat :) Orchestrator using GNU Parallel http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/
* Execute commands on multiple computers using GNU Parallel (setting up a cluster on the cheap) https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/ * Execute commands on multiple computers using GNU Parallel (setting up a cluster on the cheap) https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/
* Functions and GNU parallel for effective cluster load management http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html * Functions and GNU parallel for effective cluster load management http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html
* Use parallel processing to save time importing databases http://drupalsun.com/node/41854
* Run multiple ssh commands in parallel with GNU Parallel http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html
* Importing huge databases faster https://www.lullabot.com/blog/article/importing-huge-databases-faster
* Run multiple ssh commands in parallel with GNU Parallel https://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html/comment-page-1
* Parallel? Gnu parallel! https://debian.pro/1834
* Bug fixes and man page updates. * Bug fixes and man page updates.
GNU Parallel - For people who live life in the parallel lane. GNU Parallel - For people who live life in the parallel lane.

4
src/parallel
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@ -3600,6 +3600,10 @@ sub which {
::debug("init", "shell path $shellpath\n"); ::debug("init", "shell path $shellpath\n");
$shellpath and last; $shellpath and last;
} }
if($testpid == $parent_of_ref->{$testpid}) {
# In Solaris zones, the PPID of the zsched process is itself
last;
}
$testpid = $parent_of_ref->{$testpid}; $testpid = $parent_of_ref->{$testpid};
} }
return $shellpath; return $shellpath;