mirror of
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parallel: --memsuspend working.
This commit is contained in:
Ole Tange
parent
b210039626
commit
e81a0eba05
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@ -1,5 +1,8 @@
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Quote of the month:
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GNU Parallel is great
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-- Newton's Flaming Laser Sword @swordgoesfwoosh@twitter
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Try GNU parallel it's awesome, and exactly the thing you are looking for. It allows you to set number of processes running among many things. I use it a lot, and can't recommend it enough.
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-- mapettheone@reddit
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@ -192,7 +192,7 @@ from:tange@gnu.org
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to:parallel@gnu.org, bug-parallel@gnu.org
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stable-bcc: Jesse Alama <jessealama@fastmail.fm>
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Subject: GNU Parallel 20210122 ('Ask/Capitol Riots') released <<[stable]>>
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Subject: GNU Parallel 20210122 ('Capitol Riots') released <<[stable]>>
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GNU Parallel 20210122 ('') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
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@ -209,7 +209,7 @@ New in this release:
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* $PARALLEL_ARGHOSTGROUPS and the replacement string {agrp} will give the hostgroup given on the argument when using --hostgroup.
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* Handy time functions for {= =}: yyyy_mm_dd_hh_mm_ss() yyyy_mm_dd_hh_mm() yyyy_mm_dd() yyyymmddhhmmss() yyyymmddhhmm() yyyymmdd()
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* Handy time functions for {= =}: yyyy_mm_dd_hh_mm_ss() yyyy_mm_dd_hh_mm() yyyy_mm_dd() yyyymmddhhmmss() yyyymmddhhmm() yyyymmdd() hash($str)
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<<>>
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@ -224,6 +224,8 @@ https://qiita.com/hana_shin/items/53c3c78525c9c758ae7c
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https://canvas.stanford.edu/courses/133091
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https://www.youtube.com/watch?v=-tX0bFAYAxM
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<<>>
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Get the book: GNU Parallel 2018 http://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html
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111
src/parallel
111
src/parallel
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@ -2151,7 +2151,7 @@ sub check_invalid_option_combinations() {
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sub init_globals() {
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# Defaults:
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$Global::version = 20201223;
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$Global::version = 20210113;
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$Global::progname = 'parallel';
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$::name = "GNU Parallel";
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$Global::infinity = 2**31;
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@ -4661,8 +4661,17 @@ sub save_original_signal_handler() {
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$SIG{CONT} = sub {
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# Set $SIG{TSTP} again (it is undef'ed in sigtstp() )
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$SIG{TSTP} = \&sigtstp;
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# Send continue signal to all children process groups
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kill "CONT", map { -$_ } keys %Global::running;
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for my $job (values %Global::running) {
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if($job->suspended()) {
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# Force jobs to suspend, if they are marked as suspended.
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# --memsupspend can suspend a job that will be resumed
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# if the user presses CTRL-Z followed by `fg`.
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$job->suspend();
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} else {
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# Resume the rest of the jobs
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$job->resume();
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}
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}
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};
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}
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@ -4791,7 +4800,7 @@ sub reaper() {
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::status_no_nl("\r",$progress{'status'});
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}
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debug("run", "done ");
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debug("run", "jobdone \n");
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return $stiff;
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}
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@ -5888,7 +5897,7 @@ sub reap_usleep() {
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kill_youngster_if_not_enough_mem($opt::memfree*0.5);
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}
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if($opt::memsuspend) {
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kill_youngster_if_not_enough_mem($opt::memsuspend*0.5);
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suspend_young_if_not_enough_mem($opt::memsuspend);
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}
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if($opt::limit) {
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kill_youngest_if_over_limit();
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@ -5953,6 +5962,58 @@ sub kill_youngest_if_over_limit() {
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}
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}
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sub suspend_young_if_not_enough_mem() {
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# Check each $sshlogin if there is enough mem.
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# If less than $limit free mem: suspend some of the young children
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# Else: Resume all jobs
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# Uses:
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# %Global::running
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my $limit = shift;
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my %jobs_of;
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my @sshlogins;
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for my $job (values %Global::running) {
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if(not $jobs_of{$job->sshlogin()}) {
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push @sshlogins, $job->sshlogin();
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}
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push @{$jobs_of{$job->sshlogin()}}, $job;
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}
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for my $sshlogin (@sshlogins) {
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my $free = $sshlogin->memfree();
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if($free < 2*$limit) {
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# Suspend all jobs (resume some of them later)
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map { $_->suspended() or $_->suspend(); } @{$jobs_of{$sshlogin}};
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my @jobs = sort { $b->seq() <=> $a->seq() } @{$jobs_of{$sshlogin}};
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# how many should be running?
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# limit*1 => 1;
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# limit*1.5 => 2;
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# limit*1.75 => 4;
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# free < limit*(2-1/2^n);
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# =>
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# 1/(2-free/limit) < 2^n;
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my $run = int(1/(2-$free/$limit));
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$run = ::min($run,$#jobs);
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# Resume the oldest running
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for my $job ((sort { $a->seq() <=> $b->seq() } @jobs)[0..$run]) {
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::debug("mem","\nResume ",$run+1, " jobs. Seq ",
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$job->seq(), " resumed ",
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$sshlogin->memfree()," < ",2*$limit);
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$job->resume();
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}
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} else {
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for my $job (@{$jobs_of{$sshlogin}}) {
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if($job->suspended()) {
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$job->resume();
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::debug("mem","\nResume ",$#{$jobs_of{$sshlogin}}+1, " jobs. Seq ",
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$job->seq(), " resumed ",
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$sshlogin->memfree()," > ",2*$limit);
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last;
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}
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}
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}
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}
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}
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sub kill_youngster_if_not_enough_mem() {
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# Check each $sshlogin if there is enough mem.
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# If less than 50% enough free mem: kill off the youngest child
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@ -5977,11 +6038,7 @@ sub kill_youngster_if_not_enough_mem() {
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@{$jobs_of{$sshlogin}}));
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::debug("mem","\n", $job->seq(), "killed ",
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$sshlogin->memfree()," < ",$limit);
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if($opt::memsuspend) {
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$job->suspend();
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} else {
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$job->kill();
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}
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$job->kill();
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$sshlogin->memfree_recompute();
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} else {
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last;
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@ -8684,8 +8741,6 @@ sub suspend($) {
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my @pgrps = map { -$_ } $self->pid();
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kill "STOP", @pgrps;
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$self->set_suspended(1);
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# push job onto start stack
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$Global::JobQueue->unget($self);
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}
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sub set_suspended($$) {
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@ -9723,11 +9778,6 @@ sub start($) {
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}
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my $job = shift;
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if($job->suspended()) {
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# Job is kill -STOP'ped: Restart it.
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$job->resume();
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return $job;
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}
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# Get the shell command to be executed (possibly with ssh infront).
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my $command = $job->wrapped();
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my $pid;
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@ -12379,6 +12429,11 @@ sub pQ($) {
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return $ret;
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}
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sub hash($) {
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$Global::use{"DBI"} ||= eval "use B; 1;";
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B::hash(@_);
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}
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sub total_jobs() {
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return $Global::JobQueue->total_jobs();
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}
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@ -12402,6 +12457,24 @@ sub total_jobs() {
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# Do not quote this arg
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$Global::unquote_arg = 1;
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}
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sub yyyy_mm_dd_hh_mm_ss() {
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::strftime("%Y-%m-%dT%H:%M:%S", localtime(time()));
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}
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sub yyyy_mm_dd_hh_mm() {
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::strftime("%Y-%m-%dT%H:%M", localtime(time()));
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}
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sub yyyy_mm_dd() {
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::strftime("%Y-%m-%d", localtime(time()));
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}
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sub yyyymmddhhmmss() {
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::strftime("%Y%m%d%H%M%S", localtime(time()));
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}
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sub yyyymmddhhmm() {
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::strftime("%Y%m%d%H%M", localtime(time()));
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}
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sub yyyymmdd() {
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::strftime("%Y%m%d", localtime(time()));
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}
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sub replace($$$$) {
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# Calculates the corresponding value for a given perl expression
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@ -13448,8 +13521,8 @@ sub main() {
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while(start_more_jobs()) {}
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spreadstdin();
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} else {
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# Reap one - start one
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while(reaper() + start_more_jobs()) {}
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# Reap the finished jobs - start more
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while(reapers() + start_more_jobs()) {}
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}
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::debug("init", "Start draining\n");
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drain_job_queue(@command);
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@ -2877,7 +2877,8 @@ with replacement strings. Such as:
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that can be used like:
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parallel --header : --tmpl my.tmpl {#}.t myprog {#}.t ::: x 1 2 3 ::: y 1 2 3
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parallel --header : --tmpl my.tmpl {#}.t myprog {#}.t \
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::: x 1 2 3 ::: y 1 2 3
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Filtering may also be supported as:
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@ -941,6 +941,20 @@ par_json() {
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perl -pe 's/\d/0/g'
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}
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par_hash_and_time_functions() {
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echo '### Functions for replacement string'
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parallel echo '{= $_=join(" ",
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yyyy_mm_dd_hh_mm_ss(),
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yyyy_mm_dd_hh_mm(),
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yyyy_mm_dd(),
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yyyymmddhhmmss(),
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yyyymmddhhmm(),
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yyyymmdd()) =}' ::: 1 |
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perl -pe 's/\d/9/g'
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parallel echo '{= $_=hash($_) =}' ::: 1 |
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perl -pe 's/[a-f0-9]/X/g'
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}
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export -f $(compgen -A function | grep par_)
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compgen -A function | grep par_ | LC_ALL=C sort |
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parallel --timeout 1000% -j6 --tag -k --joblog /tmp/jl-`basename $0` '{} 2>&1' |
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@ -31,11 +31,6 @@ par_10000_m_X() {
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seq 10000 | perl -pe 's/$/.gif/' |
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parallel -j1 -km echo a{}b{.}c{.} |
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parallel -k --pipe --tee ::: wc md5sum
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seq 10000 | perl -pe 's/$/.gif/' | parallel -j1 -kX echo a{}b{.}c{.}{.}{} | wc -l
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seq 10000 | perl -pe 's/$/.gif/' | parallel -j1 -kX echo a{}b{.}c{.}{.} | wc -l
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seq 10000 | perl -pe 's/$/.gif/' | parallel -j1 -kX echo a{}b{.}c{.} | wc -l
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seq 10000 | perl -pe 's/$/.gif/' | parallel -j1 -kX echo a{}b{.}c | wc -l
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seq 10000 | perl -pe 's/$/.gif/' | parallel -j1 -kX echo a{}b | wc -l
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}
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par_10000_5_rpl_X() {
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@ -49,7 +44,6 @@ par_10000_5_rpl_X() {
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par_X_I_meta() {
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echo '### Test -X -I with shell meta chars'
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seq 10000 | parallel -j1 -I :: -X echo a::b::c:: | wc -l
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seq 10000 | parallel -j1 -I '<>' -X echo 'a<>b<>c<>' | wc -l
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seq 10000 | parallel -j1 -I '<' -X echo 'a<b<c<' | wc -l
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@ -74,8 +74,8 @@ perl -ne '$/="\n\n"; /^Output/../^[^O]\S/ and next; /^ / and print;' ../../src/
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# Timings are often off
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s/^(\d)$/9/;
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s/^(\d\d)$/99/;
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# Sometime these vars are not present
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s/^PAM_KWALLET5*_LOGIN$//;
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# Remove variable names - they vary
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s/^[A-Z][A-Z0-9_]*\s$//;
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# Fails often due to race
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s/cat: input_file: No such file or directory\n//;
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s{rsync: link_stat ".*/home/parallel/input_file.out" .*\n}{};
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@ -93,11 +93,7 @@ perl -ne '$/="\n\n"; /^Output/../^[^O]\S/ and next; /^ / and print;' ../../src/
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s/doi.*=.*//;
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s/url.*= .*doi.org.*//;
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s/.Feel free to use .nocite.*//;
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' |
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perl -ne '/GTK2_RC_FILES/ and next;
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/GTK_RC_FILES/ and next;
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print' |
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uniq
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' | uniq
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# 3+3 .par files (from --files), 1 .tms-file from tmux attach
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find {$TMPDIR,/var/tmp,/tmp}/{fif,tms,par[^a]}* -mmin -10 2>/dev/null | wc -l
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find {$TMPDIR,/var/tmp,/tmp}/{fif,tms,par[^a]}* -mmin -10 2>/dev/null | parallel rm
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@ -193,12 +193,13 @@ par_halt_one_job 1
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par_halt_one_job 2
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par_halt_one_job parallel: This job failed:
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par_halt_one_job echo 2;exit 1
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par_halt_one_job parallel: Starting no more jobs. Waiting for 0 jobs to finish.
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par_halt_one_job should run 1 = job 1
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par_halt_one_job 1
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par_halt_one_job parallel: This job failed:
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par_halt_one_job echo 1;exit 1
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par_halt_one_job parallel: Starting no more jobs. Waiting for 0 jobs to finish.
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par_hash_and_time_functions ### Functions for replacement string
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par_hash_and_time_functions 9999-99-99T99:99:99 9999-99-99T99:99 9999-99-99 99999999999999 999999999999 99999999
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par_hash_and_time_functions XxXXXXXXXX
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par_help ### Test --help and -h: Help output (just check we get the same amount of lines)
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par_help Output from -h and --help
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par_help 37
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|
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@ -7,11 +7,6 @@ par_10000_5_rpl_X 1
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par_10000_m_X ### Test -m with 10000 args
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par_10000_m_X 2 29996 186684
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par_10000_m_X c606aec1723ee5cc15f2a1b95d83d3cf -
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par_10000_m_X 3
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par_10000_m_X 2
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par_10000_m_X 2
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par_10000_m_X 2
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par_10000_m_X 1
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par_X_I_meta ### Test -X -I with shell meta chars
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par_X_I_meta 2
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par_X_I_meta 2
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|
|
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@ -3,6 +3,7 @@ echo '### --env _'
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fUbAr="OK FUBAR" parallel -S parallel@lo --env _ echo '$fUbAr $DEBEMAIL' ::: test
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OK FUBAR test
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fUbAr="OK FUBAR" parallel -S csh@lo --env _ echo '$fUbAr $DEBEMAIL' ::: test
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OK FUBAR test
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echo '### --env _ with explicit mentioning of normally ignored var $DEBEMAIL'
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### --env _ with explicit mentioning of normally ignored var $DEBEMAIL
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fUbAr="OK FUBAR" parallel -S parallel@lo --env DEBEMAIL,_ echo '$fUbAr $DEBEMAIL' ::: test
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|
|
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@ -28,17 +28,8 @@ sleep .3
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/usr/bin/bash: -c: line 0: ` perl -e 'for(1..10){print "$_\n"}') > num_%header'
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perl -e 'print "HHHHAAABBBCCC"' > fixedlen
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parallel echo ::: A B C
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A
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B
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C
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parallel -a abc-file echo
|
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A
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B
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C
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cat abc-file | parallel echo
|
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A
|
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B
|
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C
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parallel echo ::: A B C ::: D E F
|
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A D
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A E
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|
|
@ -143,16 +134,8 @@ C D
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C E
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C F
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parallel -d _ echo :::: abc_-file
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A
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B
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C
|
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parallel -d '\0' echo :::: abc0-file
|
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A
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B
|
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C
|
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parallel -E stop echo ::: A B stop C D
|
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A
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B
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(echo 1; echo; echo 2) | parallel --no-run-if-empty echo
|
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9
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parallel ::: ls 'echo foo' pwd
|
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|
|
@ -185,9 +168,7 @@ A/B
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parallel echo {/} ::: A/B.C
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B.C
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parallel echo {//} ::: A/B.C
|
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A
|
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parallel echo {/.} ::: A/B.C
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B
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parallel echo {#} ::: A B C
|
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9
|
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parallel -j 2 echo {%} ::: A B C
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|
|
@ -199,9 +180,7 @@ A/B
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parallel --basenamereplace ,, echo ,, ::: A/B.C
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B.C
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parallel --dirnamereplace ,, echo ,, ::: A/B.C
|
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A
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parallel --basenameextensionreplace ,, echo ,, ::: A/B.C
|
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B
|
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parallel --seqreplace ,, echo ,, ::: A B C
|
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9
|
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parallel -j2 --slotreplace ,, echo ,, ::: A B C
|
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|
|
@ -365,7 +344,6 @@ G H
|
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parallel -N0 echo foo ::: 1 2 3
|
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foo
|
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perl -e 'print "@ARGV\n"' A
|
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A
|
||||
parallel perl -e 'print "@ARGV\n"' ::: This wont work
|
||||
Warning: Input is read from the terminal. You either know what you
|
||||
Warning: are doing (in which case: YOU ARE AWESOME!) or you forgot
|
||||
|
|
@ -420,9 +398,6 @@ echo A
|
|||
echo B
|
||||
echo C
|
||||
parallel --verbose echo {} ::: A B C
|
||||
A
|
||||
B
|
||||
C
|
||||
echo A
|
||||
echo B
|
||||
echo C
|
||||
|
|
@ -468,9 +443,6 @@ echo C
|
|||
parallel --tmpdir /var/tmp --files echo ::: A B C
|
||||
/var/tmp/parXXXXX.par
|
||||
parallel --results outdir echo ::: A B C
|
||||
A
|
||||
B
|
||||
C
|
||||
outdir/1/A/seq
|
||||
outdir/1/A/stderr
|
||||
outdir/1/A/stdout
|
||||
|
|
@ -804,87 +776,6 @@ in my_func baz
|
|||
cat ~/.parallel/ignored_vars|sort
|
||||
BASH_FUNC_run_once%%
|
||||
BASH_FUNC_run_test%%
|
||||
COLORFGBG
|
||||
COLORTERM
|
||||
DBUS_SESSION_BUS_ADDRESS
|
||||
DEBEMAIL
|
||||
DEBFULLNAME
|
||||
DESKTOP_SESSION
|
||||
DISPLAY
|
||||
EDITOR
|
||||
GOPATH
|
||||
GPG_AGENT_INFO
|
||||
HISTCONTROL
|
||||
HOME
|
||||
KDE_FULL_SESSION
|
||||
KDE_SESSION_UID
|
||||
KDE_SESSION_VERSION
|
||||
KONSOLE_DBUS_SERVICE
|
||||
KONSOLE_DBUS_SESSION
|
||||
KONSOLE_DBUS_WINDOW
|
||||
KONSOLE_VERSION
|
||||
LANG
|
||||
LANGUAGE
|
||||
LC_ALL
|
||||
LESS
|
||||
LESSCLOSE
|
||||
LESSOPEN
|
||||
LOGNAME
|
||||
LS_COLORS
|
||||
MAKEFLAGS
|
||||
MAKELEVEL
|
||||
MAKE_TERMERR
|
||||
MAKE_TERMOUT
|
||||
MFLAGS
|
||||
OLDPWD
|
||||
ORACLE_HOME
|
||||
ORACLE_SID
|
||||
PARALLEL
|
||||
PARALLEL_HOME
|
||||
PARALLEL_JOBSLOT
|
||||
PARALLEL_PID
|
||||
PARALLEL_RSYNC_OPTS
|
||||
PARALLEL_SEQ
|
||||
PARALLEL_SSHHOST
|
||||
PARALLEL_SSHLOGIN
|
||||
PARALLEL_TMP
|
||||
PATH
|
||||
PERL_MB_OPT
|
||||
PERL_MM_OPT
|
||||
PROFILEHOME
|
||||
PWD
|
||||
QT_ACCESSIBILITY
|
||||
QT_AUTO_SCREEN_SCALE_FACTOR
|
||||
SERVER1
|
||||
SERVER2
|
||||
SESSION_MANAGER
|
||||
SHELL
|
||||
SHELL_SESSION_ID
|
||||
SHLVL
|
||||
SSH_AGENT_PID
|
||||
SSH_AUTH_SOCK
|
||||
TERM
|
||||
TIMEOUT
|
||||
TMPDIR
|
||||
TRIES
|
||||
USER
|
||||
VISUAL
|
||||
WINDOWID
|
||||
XAUTHORITY
|
||||
XCURSOR_SIZE
|
||||
XCURSOR_THEME
|
||||
XDG_CONFIG_DIRS
|
||||
XDG_CURRENT_DESKTOP
|
||||
XDG_DATA_DIRS
|
||||
XDG_RUNTIME_DIR
|
||||
XDG_SEAT
|
||||
XDG_SEAT_PATH
|
||||
XDG_SESSION_CLASS
|
||||
XDG_SESSION_DESKTOP
|
||||
XDG_SESSION_ID
|
||||
XDG_SESSION_PATH
|
||||
XDG_SESSION_TYPE
|
||||
XDG_VTNR
|
||||
_
|
||||
mysqlrootpass
|
||||
# The function is only copied if using Bash
|
||||
|
|
@ -1133,61 +1024,35 @@ parallel: Error: echo is not a valid DBURL
|
|||
cat fixedlen | parallel --pipe --header .{4} --block 3 --recend '' \
|
||||
'echo start; cat; echo'
|
||||
start
|
||||
HHHHAAA
|
||||
start
|
||||
HHHHBBB
|
||||
start
|
||||
HHHHCCC
|
||||
echo /foo, bar/, /baz, qux/, | \
|
||||
parallel -kN1 --recend ', ' --pipe echo JOB{#}\;cat\;echo END
|
||||
JOB1
|
||||
/foo, END
|
||||
JOB2
|
||||
bar/, END
|
||||
JOB3
|
||||
/baz, END
|
||||
JOB4
|
||||
qux/,
|
||||
END
|
||||
echo /foo, bar/, /baz, qux/, | \
|
||||
parallel -kN1 --recstart / --pipe echo JOB{#}\;cat\;echo END
|
||||
JOB1
|
||||
/foo, barEND
|
||||
JOB2
|
||||
/, END
|
||||
JOB3
|
||||
/baz, quxEND
|
||||
JOB4
|
||||
/,
|
||||
END
|
||||
echo /foo, bar/, /baz, qux/, | \
|
||||
parallel -kN1 --recend ', ' --recstart / --pipe \
|
||||
echo JOB{#}\;cat\;echo END
|
||||
JOB1
|
||||
/foo, bar/, END
|
||||
JOB2
|
||||
/baz, qux/,
|
||||
END
|
||||
echo foo,bar,_baz,__qux, | \
|
||||
parallel -kN1 --regexp --recend ,_+ --pipe \
|
||||
echo JOB{#}\;cat\;echo END
|
||||
JOB1
|
||||
foo,bar,_END
|
||||
JOB2
|
||||
baz,__END
|
||||
JOB3
|
||||
qux,
|
||||
END
|
||||
echo foo,bar,_baz,__qux, | \
|
||||
parallel -kN1 --rrs --regexp --recend ,_+ --pipe \
|
||||
echo JOB{#}\;cat\;echo END
|
||||
JOB1
|
||||
foo,barEND
|
||||
JOB2
|
||||
bazEND
|
||||
JOB3
|
||||
qux,
|
||||
END
|
||||
cat num_%header | \
|
||||
parallel --header '(%.*\n)*' --pipe -N3 echo JOB{#}\;cat
|
||||
cat: num_%header: No such file or directory
|
||||
|
|
@ -1384,7 +1249,6 @@ When using programs that use GNU Parallel to process data for publication
|
|||
please cite as described in 'parallel --citation'.
|
||||
parallel --minversion VERSION && \
|
||||
echo Your version is at least VERSION.
|
||||
VERSION
|
||||
Your version is at least VERSION.
|
||||
parallel --citation
|
||||
Academic tradition requires you to cite works you base your article on.
|
||||
|
|
@ -1416,9 +1280,6 @@ mentioned in the release notes of next version of GNU Parallel.
|
|||
echo '--nice 17' > ~/.parallel/nicetimeout
|
||||
echo '--timeout 300%' >> ~/.parallel/nicetimeout
|
||||
parallel --profile nicetimeout echo ::: A B C
|
||||
A
|
||||
B
|
||||
C
|
||||
echo '-vv --dry-run' > ~/.parallel/dryverbose
|
||||
parallel --profile dryverbose --profile nicetimeout echo ::: A B C
|
||||
echo A
|
||||
|
|
|
|||
Loading…
Reference in a new issue