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parallel: Fixed bug #59843: --regexp --recstart '#' fails.
This commit is contained in:
Ole Tange
parent
2f28e78c0b
commit
f539554727
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@ -1,8 +1,11 @@
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Quote of the month:
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It's really quite amazing how powerful and flexible it is
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-- schwanengesang @tensegrist@twitter
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Every time I install @ubuntu, one of the first tools I install is
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@gnuparallel. I love it.
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-- Necati Demir @ndemir
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-- Necati Demir @ndemir@twitter
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Today I'm grateful for GNU parallel, especially with the --colsep and
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--jobs parameters #GiveThanks
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@ -192,7 +192,7 @@ from:tange@gnu.org
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to:parallel@gnu.org, bug-parallel@gnu.org
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stable-bcc: Jesse Alama <jessealama@fastmail.fm>
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Subject: GNU Parallel 20210122 ('') released <<[stable]>>
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Subject: GNU Parallel 20210122 ('Capitol Riots') released <<[stable]>>
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GNU Parallel 20210122 ('') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/
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@ -213,6 +213,8 @@ New in this release:
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News about GNU Parallel:
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https://www.codenong.com/25172209/
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<<>>
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Get the book: GNU Parallel 2018 http://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html
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12
src/parallel
12
src/parallel
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@ -322,6 +322,7 @@ sub parcat_script() {
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for $infh (@ready) {
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# There is only one key, namely the output file descriptor
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for my $outfd (keys %{$buffer{$infh}}) {
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# TODO test if 65536 is optimal (2^17 is used elsewhere)
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$rv = sysread($infh, $buf, 65536);
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if (!$rv) {
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if($! == EAGAIN) {
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@ -624,6 +625,7 @@ sub find_split_positions($$$) {
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}
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# The optimal dd blocksize for mint, redhat, solaris, openbsd = 2^17..2^20
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# The optimal dd blocksize for freebsd = 2^15..2^17
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# The optimal dd blocksize for ubuntu (AMD6376) = 2^16
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my $dd_block_size = 131072; # 2^17
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my @pos;
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my ($recstart,$recend) = recstartrecend();
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@ -1232,6 +1234,11 @@ sub recstartrecend() {
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# this should only apply to the regexp
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$recstart = "(?:".$recstart.")";
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$recend = "(?:".$recend.")";
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# Quote # and space
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$recstart =~ s/#/\\#/g;
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$recend =~ s/#/\\#/g;
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$recstart =~ s/ /\\ /g;
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$recend =~ s/ /\\ /g;
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} else {
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# $recstart/$recend = printf strings (\n)
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$recstart =~ s/\\([0rnt\'\"\\])/"qq|\\$1|"/gee;
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@ -2017,8 +2024,8 @@ sub parse_options(@) {
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# the alternatives instead?
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# See a list in: 'man parallel_alternatives'
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#
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# If you want GNU Parallel to be maintained in the future keep
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# this line.
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# If you want GNU Parallel to be maintained in the future you
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# should keep this line.
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citation_notice();
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# Seriously: _YOU_ will be harming free software by removing the
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# notice. _YOU_ make it harder to justify spending time developing
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@ -11722,7 +11729,6 @@ sub max_length($) {
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my $len_cache = $Global::cache_dir . "/tmp/sshlogin/" . ::hostname() .
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"/linelen";
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my $cached_limit;
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if(open(my $fh, "<", $len_cache)) {
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$cached_limit = <$fh>;
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$cached_limit || ::die_bug("Cannot read $len_cache");
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@ -338,6 +338,20 @@ sequence number of job
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the arguments
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=item Z<> B<yyyy_mm_dd_hh_mm_ss()>
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=item Z<> B<yyyy_mm_dd_hh_mm()>
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=item Z<> B<yyyy_mm_dd()>
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=item Z<> B<yyyymmddhhmmss()>
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=item Z<> B<yyyymmddhhmm()>
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=item Z<> B<yyyymmdd()>
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time functions
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=back
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Example:
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@ -3845,7 +3859,7 @@ is much faster.
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If it still does not fit in memory you can do this:
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parallel --pipepart -a regexps.txt --block 1M grep -Ff - -n bigfile | \
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parallel --pipepart -a regexps.txt --block 1M grep -F -f - -n bigfile | \
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sort -un | perl -pe 's/^\d+://'
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The 1M should be your free memory divided by the number of CPU threads and
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@ -23,7 +23,7 @@ developers with irregular releases and only maintained for a few
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years.
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=head2 SUMMARY TABLE
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=head2 SUMMARY LEGEND
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The following features are in some of the comparable tools:
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@ -52,7 +52,7 @@ B<Outputs>
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O5. Stdout only contains stdout (standard output) from the command
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O6. Stderr only contains stderr (standard error) from the command
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O7. Buffering on disk
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O8. Cleanup of file if killed
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O8. Cleanup of temporary files if killed
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O9. Test if disk runs full during run
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O10. Output of a line bigger than 4 GB
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@ -86,7 +86,7 @@ B<Legend>
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ID = yes
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As every new version of the programs are not tested the table may be
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outdated. Please file a bug-report if you find errors (See REPORTING
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outdated. Please file a bug report if you find errors (See REPORTING
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BUGS).
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parallel:
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@ -97,26 +97,10 @@ E1 E2 E3 E4 E5 E6 E7
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R1 R2 R3 R4 R5 R6 R7 R8 R9
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S1 S2
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find -exec:
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- - - x - x -
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- M2 M3 - - - -
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- O2 O3 O4 O5 O6
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- - - - - - -
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- - - - - - - - -
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x x
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make -j:
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- - - - - - -
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- - - - - -
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O1 O2 O3 - x O6
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E1 - - - E5 -
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- - - - - - - - -
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- -
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=head2 DIFFERENCES BETWEEN xargs AND GNU Parallel
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Summary table (see legend above):
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Summary (see legend above):
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I1 I2 - - - - -
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- M2 M3 - - -
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- O2 O3 - O5 O6
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@ -212,6 +196,14 @@ https://www.gnu.org/software/findutils/
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=head2 DIFFERENCES BETWEEN find -exec AND GNU Parallel
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Summary (see legend above):
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- - - x - x -
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- M2 M3 - - - -
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- O2 O3 O4 O5 O6
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- - - - - - -
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- - - - - - - - -
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x x
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B<find -exec> offers some of the same possibilities as GNU B<parallel>.
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B<find -exec> only works on files. Processing other input (such as
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@ -223,6 +215,14 @@ https://www.gnu.org/software/findutils/ (Last checked: 2019-01)
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=head2 DIFFERENCES BETWEEN make -j AND GNU Parallel
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Summary (see legend above):
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- - - - - - -
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- - - - - -
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O1 O2 O3 - x O6
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E1 - - - E5 -
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- - - - - - - - -
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- -
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B<make -j> can run jobs in parallel, but requires a crafted Makefile
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to do this. That results in extra quoting to get filenames containing
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newlines to work correctly.
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@ -238,7 +238,7 @@ https://www.gnu.org/software/make/ (Last checked: 2019-01)
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=head2 DIFFERENCES BETWEEN ppss AND GNU Parallel
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Summary table (see legend above):
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Summary (see legend above):
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I1 I2 - - - - I7
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M1 - M3 - - M6
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O1 - - x - -
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@ -323,7 +323,7 @@ https://github.com/louwrentius/PPSS
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=head2 DIFFERENCES BETWEEN pexec AND GNU Parallel
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Summary table (see legend above):
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Summary (see legend above):
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I1 I2 - I4 I5 - -
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M1 - M3 - - M6
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O1 O2 O3 - O5 O6
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@ -646,7 +646,7 @@ https://github.com/cheusov/paexec
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=head2 DIFFERENCES BETWEEN map(sitaramc) AND GNU Parallel
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Summary table (see legend above):
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Summary (see legend above):
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I1 - - I4 - - (I7)
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M1 (M2) M3 (M4) M5 M6
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- O2 O3 - O5 - - N/A N/A O10
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@ -1962,7 +1962,7 @@ https://github.com/fd0/machma (Last checked: 2019-06)
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=head2 DIFFERENCES BETWEEN interlace AND GNU Parallel
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Summary table (see legend above):
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Summary (see legend above):
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- I2 I3 I4 - - -
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M1 - M3 - - M6
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- O2 O3 - - - - x x
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@ -2337,7 +2337,7 @@ https://github.com/amritb/with-this.git (Last checked: 2019-03)
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=head2 DIFFERENCES BETWEEN Tollef's parallel (moreutils) AND GNU Parallel
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Summary table (see legend above):
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Summary (see legend above):
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- - - I4 - - I7
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- - M3 - - M6
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- O2 O3 - O5 O6 - x x
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@ -2363,7 +2363,7 @@ B<GNU> parallel -j 3 ::: ls df "echo hi"
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=head2 DIFFERENCES BETWEEN rargs AND GNU Parallel
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Summary table (see legend above):
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Summary (see legend above):
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I1 - - - - - I7
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- - M3 M4 - -
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- O2 O3 - O5 O6 - O8 -
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@ -2422,7 +2422,7 @@ https://github.com/lotabout/rargs (Last checked: 2020-01)
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=head2 DIFFERENCES BETWEEN threader AND GNU Parallel
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Summary table (see legend above):
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Summary (see legend above):
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I1 - - - - - -
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M1 - M3 - - M6
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O1 - O3 - O5 - - N/A N/A
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@ -2444,7 +2444,7 @@ https://github.com/voodooEntity/threader (Last checked: 2020-04)
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=head2 DIFFERENCES BETWEEN runp AND GNU Parallel
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Summary table (see legend above):
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Summary (see legend above):
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I1 I2 - - - - -
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M1 - (M3) - - M6
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O1 O2 O3 - O5 O6 - N/A N/A -
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@ -2570,7 +2570,7 @@ https://github.com/jreisinger/runp (Last checked: 2020-04)
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=head2 DIFFERENCES BETWEEN papply AND GNU Parallel
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Summary table (see legend above):
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Summary (see legend above):
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- - - I4 - - -
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M1 - M3 - - M6
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- - O3 - O5 - - N/A N/A O10
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@ -2616,7 +2616,7 @@ https://pypi.org/project/papply/ (Last checked: 2020-04)
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=head2 DIFFERENCES BETWEEN async AND GNU Parallel
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Summary table (see legend above):
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Summary (see legend above):
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- - - I4 - - I7
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- - - - - M6
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- O2 O3 - O5 O6 - N/A N/A O10
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@ -2690,88 +2690,35 @@ composed commands.
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https://github.com/ctbur/async/ (Last checked: 2020-11)
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=head2 DIFFERENCES BETWEEN pardi AND GNU Parallel
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Summary (see legend above):
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I1 I2 - - - - I7
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M1 - - - - M6
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O1 O2 O3 O4 O5 - O7 - - O10
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E1 - - E4 - - -
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- - - - - - - - -
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- -
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B<pardi> is very similar to B<parallel --pipe --cat>: It reads blocks
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of data and not arguments. So it cannot insert an argument in the
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command line. It puts the block into a temporary file, and this file
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name (%IN) can be put in the command line. You can only use %IN once.
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It can also run full command lines in parallel (like: B<cat file |
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parallel>).
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https://github.com/UnixJunkie/pardi (Last checked: 2021-01)
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=head2 Todo
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test_many_var() {
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gen500k() { seq -f %f 1000000000000000 1000000000050000 | head -c 131000; }
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for a in `seq 11000`; do eval "export a$a=1" ; done
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gen500k | stdout parallel --timeout 5 -Xj1 'echo {} {} {} {} | wc' | perl -pe 's/\d{3,5} //g'
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}
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test_many_var_func() {
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gen500k() { seq -f %f 1000000000000000 1000000000050000 | head -c 131000; }
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for a in `seq 5100`; do eval "export a$a=1" ; done
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for a in `seq 5100`; do eval "a$a() { 1; }" ; done
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for a in `seq 5100`; do eval export -f a$a ; done
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gen500k | stdout parallel --timeout 21 -Xj1 'echo {} {} {} {} | wc' | perl -pe 's/\d{3,5} //g'
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}
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test_many_var_func() {
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gen500k() { seq -f %f 1000000000000000 1000000000050000 | head -c 131000; }
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for a in `seq 8000`; do eval "a$a() { 1; }" ; done
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for a in `seq 8000`; do eval export -f a$a ; done
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gen500k | stdout parallel --timeout 6 -Xj1 'echo {} {} {} {} | wc' | perl -pe 's/\d{3,5} //g'
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}
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test_big_func() {
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gen500k() { seq -f %f 1000000000000000 1000000000050000 | head -c 131000; }
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big=`seq 1000`
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for a in `seq 50`; do eval "a$a() { '$big'; }" ; done
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for a in `seq 50`; do eval export -f a$a ; done
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gen500k | stdout parallel --timeout 4 -Xj1 'echo {} {} {} {} | wc' | perl -pe 's/\d{3,5} //g'
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}
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test_many_var_big_func() {
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gen500k() { seq -f %f 1000000000000000 1000000000050000 | head -c 131000; }
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big=`seq 1000`
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for a in `seq 5100`; do eval "export a$a=1" ; done
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for a in `seq 20`; do eval "a$a() { '$big'; }" ; done
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for a in `seq 20`; do eval export -f a$a ; done
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gen500k | stdout parallel --timeout 6 -Xj1 'echo {} {} {} {} | wc' | perl -pe 's/\d{3,5} //g'
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}
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test_big_func_name() {
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gen500k() { seq -f %f 1000000000000000 1000000000050000 | head -c 131000; }
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big=`perl -e print\"x\"x10000`
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for a in `seq 20`; do eval "export a$big$a=1" ; done
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gen500k | stdout parallel --timeout 8 -Xj1 'echo {} {} {} {} | wc' | perl -pe 's/\d{3,5} //g'
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}
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test_big_var_func_name() {
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gen500k() { seq -f %f 1000000000000000 1000000000050000 | head -c 131000; }
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big=`perl -e print\"x\"x10000`
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for a in `seq 2`; do eval "export a$big$a=1" ; done
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for a in `seq 2`; do eval "a$big$a() { '$big'; }" ; done
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for a in `seq 2`; do eval export -f a$big$a ; done
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gen500k | stdout parallel --timeout 1000 -Xj1 'echo {} {} {} {} | wc' | perl -pe 's/\d{3,5} //g'
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}
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|
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|
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tange@macosx:~$ for a in `seq 100`; do eval export a$a=fffffffffffffffffffffffff ; donetange@macosx:~$ seq 50000 | stdout parallel -Xj1 'echo {} {} | wc' | perl -pe 's/\d{3,5} //g'
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tange@macosx:~$ for a in `seq 100`; do eval export a$a=fffffffffffffffffffffffff ; donetange@macosx:~$ seq 50000 | stdout parallel -Xj1 'echo {} {} | wc' | perl -pe 's/\d{3,5} //g'
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tange@macosx:~$ for a in `seq 100`; do eval export -f a$a ; done
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seq 100000 | stdout parallel -Xj1 'echo {} {} | wc'
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export a=`seq 10000`
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seq 100000 | stdout parallel -Xj1 'echo {} {} | wc'
|
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|
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my $already_spread;
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my $env_size;
|
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|
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if($^O eq "darwin") {
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$env_size ||= 500+length(join'',%ENV);
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$max_len -= $env_size;
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}
|
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|
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|
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PASH: Light-touch Data-Parallel Shell Processing
|
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https://arxiv.org/pdf/2007.09436.pdf
|
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|
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https://github.com/UnixJunkie/pardi
|
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https://arxiv.org/pdf/2012.15443.pdf KumQuat
|
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|
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https://arxiv.org/pdf/2007.09436.pdf
|
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|
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https://github.com/UnixJunkie/PAR (Same as http://savannah.nongnu.org/projects/par above?)
|
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|
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|
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|
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@ -2999,7 +2999,7 @@ When asking for help, always report the full output of this:
|
|||
|
||||
Output:
|
||||
|
||||
GNU parallel 20200122
|
||||
GNU parallel 20210122
|
||||
Copyright (C) 2007-2021 Ole Tange, http://ole.tange.dk and Free Software
|
||||
Foundation, Inc.
|
||||
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
|
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|
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@ -3161,7 +3161,7 @@ https://my.fsf.org/donate/
|
|||
|
||||
=back
|
||||
|
||||
(C) 2013-2020 Ole Tange, FDLv1.3 (See fdl.txt)
|
||||
(C) 2013-2021 Ole Tange, FDLv1.3 (See fdl.txt)
|
||||
|
||||
|
||||
=cut
|
||||
|
|
|
|||
|
|
@ -18,7 +18,7 @@ B<parsort> uses GNU B<sort> to sort in parallel. It works just like
|
|||
B<sort> but faster on inputs with more than 1 M lines, if you have a
|
||||
multicore machine.
|
||||
|
||||
Hopefully these ideas will make it into GNU Sort in the future.
|
||||
Hopefully these ideas will make it into GNU B<sort> in the future.
|
||||
|
||||
|
||||
=head1 EXAMPLE
|
||||
|
|
|
|||
|
|
@ -262,10 +262,14 @@ lsh_setup() {
|
|||
lsh -c aes256-ctr --sloppy-host-authentication \
|
||||
--capture-to ~/.lsh/host-acls localhost echo Added host-auth
|
||||
lsh-keygen | lsh-writekey -c none
|
||||
lsh-export-key --openssh < ~/.lsh/identity.pub |
|
||||
lsh -c aes256-ctr lo 'cat >>.ssh/authorized_keys'
|
||||
lsh-export-key --openssh < ~/.lsh/identity.pub |
|
||||
ssh csh@lo 'cat >>.ssh/authorized_keys'
|
||||
export_key_to_local_users() {
|
||||
lsh-export-key --openssh < ~/.lsh/identity.pub |
|
||||
ssh -l $1 lo 'cat >>.ssh/authorized_keys'
|
||||
}
|
||||
export -f export_key_to_local_users
|
||||
shellsplus | parallel --bar --timeout 5 export_key_to_local_users
|
||||
shellsplus | parallel --bar --timeout 5 'lsh -l {} lo true || export_key_to_local_users {}'
|
||||
shellsplus | parallel --bar --timeout 5 'lsh -l {} lo true || echo Fail {}'
|
||||
}
|
||||
|
||||
add_freebsd() {
|
||||
|
|
|
|||
|
|
@ -4,6 +4,18 @@
|
|||
# Each should be taking 1-3s and be possible to run in parallel
|
||||
# I.e.: No race conditions, no logins
|
||||
|
||||
par_recend_recstart_hash() {
|
||||
echo "### bug #59843: --regexp --recstart '#' fails"
|
||||
(echo '#rec1'; echo 'bar'; echo '#rec2') |
|
||||
parallel -k --regexp --pipe -N1 --recstart '#' wc
|
||||
(echo ' rec1'; echo 'bar'; echo ' rec2') |
|
||||
parallel -k --regexp --pipe -N1 --recstart ' ' wc
|
||||
(echo 'rec2'; echo 'bar#';echo 'rec2' ) |
|
||||
parallel -k --regexp --pipe -N1 --recend '#' wc
|
||||
(echo 'rec2'; echo 'bar ';echo 'rec2' ) |
|
||||
parallel -k --regexp --pipe -N1 --recend ' ' wc
|
||||
}
|
||||
|
||||
par_sqlandworker_uninstalled_dbd() {
|
||||
echo 'bug #56096: dbi-csv no such column'
|
||||
mkdir -p /tmp/parallel-bug-56096
|
||||
|
|
|
|||
|
|
@ -277,6 +277,7 @@ E agrp=c+b+csh@lo+lo+bash@lo
|
|||
E agrp=c+b+lo+bash@lo+csh@lo
|
||||
E agrp=c+b+lo+csh@lo+bash@lo
|
||||
E agrp=c+bash@lo+b+csh@lo+lo
|
||||
E agrp=c+bash@lo+csh@lo+b+lo
|
||||
E agrp=c+bash@lo+b+lo+csh@lo
|
||||
E agrp=c+bash@lo+csh@lo+lo+b
|
||||
E agrp=c+bash@lo+lo+b+csh@lo
|
||||
|
|
|
|||
|
|
@ -384,6 +384,15 @@ par_pxz_complains bug #44250: pxz complains File format not recognized but decom
|
|||
par_pxz_complains ls: cannot access '/OK-if-missing-file': No such file or directory
|
||||
par_pxz_complains can not seek in input: Illegal seek
|
||||
par_pxz_complains ls: cannot access '/OK-if-missing-file': No such file or directory
|
||||
par_recend_recstart_hash ### bug #59843: --regexp --recstart '#' fails
|
||||
par_recend_recstart_hash 2 2 10
|
||||
par_recend_recstart_hash 1 1 6
|
||||
par_recend_recstart_hash 2 2 10
|
||||
par_recend_recstart_hash 1 1 6
|
||||
par_recend_recstart_hash 1 2 9
|
||||
par_recend_recstart_hash 2 1 6
|
||||
par_recend_recstart_hash 1 2 9
|
||||
par_recend_recstart_hash 2 1 6
|
||||
par_replacement_rename ### Test --basenamereplace
|
||||
par_replacement_rename b.c b.c b.c b b b
|
||||
par_replacement_rename b.c
|
||||
|
|
|
|||
Loading…
Reference in a new issue