parallel: Detection of CPU on Tru64.

NEWS

@@ -51,7 +51,7 @@
 
 * GNU Parallel was cited in: Investigating speaker gender using rhythm
   metrics in Arabic dialects
-  http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6602389
+  http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389
 
 * GNU Parallel was cited in: Tiedon erist ̈minen ja visualisointi a
   lastensuojelun asiakaskertomuksista

doc/release_new_version

@@ -201,13 +201,49 @@ cc:Sandro Cazzaniga <kharec@mandriva.org>,
    Ryoichiro Suzuki <ryoichiro.suzuki@gmail.com>,
    Jesse Alama <jesse.alama@gmail.com>
 
-Subject: GNU Parallel 20131222 ('Yutu' 玉兔) released
+Subject: GNU Parallel 20131222 ('Yutu' 玉兔 eller Mandela) released
 
-GNU Parallel 20131222 ('Yutu' 玉兔) has been released. It is
+GNU Parallel 20131222 ('Yutu' 玉兔 eller Mandela) has been released. It is
 available for download at: http://ftp.gnu.org/gnu/parallel/
 
 New in this release:
 
+* GNU Parallel was cited in: Variational Message-Passing: Extension to
+  Continuous Variables and Applications in Multi-Target Tracking
+  http://www.ics.uci.edu/~ajfrank/pubs/thesis.pdf
+
+* GNU Parallel was cited in: Genome Assembly: Scaffolding Guided by
+  Related Genomes
+  https://www.duo.uio.no/handle/10852/37431
+
+* GNU Parallel was cited in: Metagenomic analysis of Mariana Trench
+  sediment samples
+  http://repositorio.ul.pt/handle/10451/9436
+
+* GNU Parallel was cited in: Diacritization, automatic segmentation
+  and labeling for Levantine Arabic speech
+  http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642556
+
+* GNU Parallel was cited in: Investigation of emotion classification
+  using speech rhythm metrics
+  http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642591
+
+* GNU Parallel was cited in: A Rhythm-Based Analysis of Arabic Native
+  and Non-Native Speaking Styles
+  http://www.ijsps.com/uploadfile/2013/1128/20131128014413279.pdf
+
+* GNU Parallel was cited in: Evolutionary optimization of wetlands
+  design
+  http://dl.acm.org/citation.cfm?id=2480400
+
+* GNU Parallel was cited (unfortunately with wrong citation) in:
+  RDBMS vs NoSQL: Performance and Scaling Comparison
+  http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2012-2013/RDBMS%20vs%20NoSQL%20-%20Performance%20and%20Scaling%20Comparison.pdf
+
+* GNU Parallel was used (without proper citation) in: Comprehensive
+  Analysis Pipeline for Discovery of Human Genetic Variation
+  http://www.google.com/patents/US20130311106
+
 * Using GNU Parallel to create a SVM classifier 
   http://ivanyu.me/blog/2013/12/01/parallel/
 

src/parallel

@@ -3384,6 +3384,8 @@ sub no_of_cpus {
         $no_of_cpus = no_of_cpus_openserver();
     } elsif ($^O eq 'irix') {
         $no_of_cpus = no_of_cpus_irix();
+    } elsif ($^O eq 'dec_osf') {
+        $no_of_cpus = no_of_cpus_tru64();
     } else {
 	$no_of_cpus = (no_of_cpus_gnu_linux()
 		       || no_of_cpus_freebsd()
@@ -3397,6 +3399,7 @@ sub no_of_cpus {
 		       || no_of_cpus_qnx()
 		       || no_of_cpus_openserver()
 		       || no_of_cpus_irix()
+		       || no_of_cpus_tru64()
 	    );
     }
     if($no_of_cpus) {
@@ -3437,6 +3440,8 @@ sub no_of_cores {
         $no_of_cores = no_of_cores_openserver();
     } elsif ($^O eq 'irix') {
         $no_of_cores = no_of_cores_irix();
+    } elsif ($^O eq 'dec_osf') {
+        $no_of_cores = no_of_cores_tru64();
     } else {
 	$no_of_cores = (no_of_cores_gnu_linux()
 			|| no_of_cores_freebsd()
@@ -3450,6 +3455,7 @@ sub no_of_cores {
 			|| no_of_cores_qnx()
 			|| no_of_cores_openserver()
 			|| no_of_cores_irix()
+			|| no_of_cores_tru64()
 	    );
     }
     if($no_of_cores) {
@@ -3749,6 +3755,24 @@ sub no_of_cores_irix {
     return $no_of_cores;
 }
 
+sub no_of_cpus_tru64 {
+    # Returns:
+    #   Number of physical CPUs on Tru64
+    #   undef if not Tru64
+    my $no_of_cpus =
+        (`sizer -pr`);
+    return $no_of_cpus;
+}
+
+sub no_of_cores_tru64 {
+    # Returns:
+    #   Number of CPU cores on Tru64
+    #   undef if not Tru64
+    my $no_of_cores = 
+        (`sizer -pr`);
+    return $no_of_cores;
+}
+
 sub sshcommand {
     my $self = shift;
     if (not defined $self->{'sshcommand'}) {
@@ -4428,8 +4452,7 @@ sub sshlogin_wrap {
 		my $wd = ::shell_quote_file($self->workdir());
 		$remote_pre .= ::shell_quote_scalar("mkdir -p ") . $wd .
 		    ::shell_quote_scalar("; cd ") . $wd . 
-		    ::shell_quote_scalar(qq{ || sh -c 'echo "$Global::progname: Error: cannot cd to $wd" 1>&2' }.
+		    ::shell_quote_scalar(qq{ || exit 255;});
-					 "&& exit 255; ");
 	    }
 	    $self->{'sshlogin_wrap'} =
 		($pre

testsuite/tests-to-run/parallel-local12.sh

@@ -1,5 +1,7 @@
 #!/bin/bash
 
+rm -f ~/.parallel/will-cite
+
 echo '### Test stdin goes to first command only ("-" as argument)'
 cat >/tmp/parallel-script-for-script <<EOF
 #!/bin/bash

testsuite/tests-to-run/test15.sh

@@ -2,6 +2,8 @@
 
 # Test xargs compatibility
 
+rm -f ~/.parallel/will-cite
+
 echo '### Test -p --interactive'
 cat >/tmp/parallel-script-for-expect <<_EOF
 #!/bin/bash

testsuite/wanted-results/parallel-local-ssh2

@@ -3,13 +3,10 @@ OK
 ### --wd no-such-dir
 mkdir: cannot create directory ‘/no-such-dir’: Permission denied
 bash: line 0: cd: /no-such-dir: No such file or directory
-parallel: Error: cannot cd to /no-such-dir
 Exit code 1
 mkdir: cannot create directory ‘/no-such-dir’: Permission denied
 bash: line 0: cd: /no-such-dir: No such file or directory
-parallel: Error: cannot cd to /no-such-dir
 Exit code 1
 mkdir: cannot create directory ‘/no-such-dir’: Permission denied
 bash: line 0: cd: /no-such-dir: No such file or directory
-parallel: Error: cannot cd to /no-such-dir
 Exit code 1

testsuite/wanted-results/parallel-local12

@@ -1,5 +1,5 @@
 ### Test stdin goes to first command only ("-" as argument)
-When using GNU Parallel to process data for publication please cite:
+When using programs that use GNU Parallel to process data for publication please cite:
 
   O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
   ;login: The USENIX Magazine, February 2011:42-47.
@@ -13,7 +13,7 @@ via first cat
 cat -
 via pseudotty
 ### Test stdin goes to first command only ("cat" as argument)
-When using GNU Parallel to process data for publication please cite:
+When using programs that use GNU Parallel to process data for publication please cite:
 
   O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
   ;login: The USENIX Magazine, February 2011:42-47.

testsuite/wanted-results/parallel-virtualbox1

@@ -13,7 +13,7 @@ centos3.tange.dk	  O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
 centos3.tange.dk	OK_if_no_perl_warnings
 centos3.tange.dk	This helps funding further development; and it won't cost you a cent.
 centos3.tange.dk	To silence this citation notice run 'parallel --bibtex' once or use '--no-notice'.
-centos3.tange.dk	When using GNU Parallel to process data for publication please cite:
+centos3.tange.dk	When using programs that use GNU Parallel to process data for publication please cite:
 centos5.tange.dk	
 centos5.tange.dk	
 centos5.tange.dk	
@@ -23,7 +23,7 @@ centos5.tange.dk	  O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
 centos5.tange.dk	OK_if_no_perl_warnings
 centos5.tange.dk	This helps funding further development; and it won't cost you a cent.
 centos5.tange.dk	To silence this citation notice run 'parallel --bibtex' once or use '--no-notice'.
-centos5.tange.dk	When using GNU Parallel to process data for publication please cite:
+centos5.tange.dk	When using programs that use GNU Parallel to process data for publication please cite:
 freebsd7.tange.dk	
 freebsd7.tange.dk	
 freebsd7.tange.dk	
@@ -33,7 +33,7 @@ freebsd7.tange.dk	  O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
 freebsd7.tange.dk	OK_if_no_perl_warnings
 freebsd7.tange.dk	This helps funding further development; and it won't cost you a cent.
 freebsd7.tange.dk	To silence this citation notice run 'parallel --bibtex' once or use '--no-notice'.
-freebsd7.tange.dk	When using GNU Parallel to process data for publication please cite:
+freebsd7.tange.dk	When using programs that use GNU Parallel to process data for publication please cite:
 redhat9.tange.dk	
 redhat9.tange.dk	
 redhat9.tange.dk	
@@ -43,4 +43,4 @@ redhat9.tange.dk	  O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
 redhat9.tange.dk	OK_if_no_perl_warnings
 redhat9.tange.dk	This helps funding further development; and it won't cost you a cent.
 redhat9.tange.dk	To silence this citation notice run 'parallel --bibtex' once or use '--no-notice'.
-redhat9.tange.dk	When using GNU Parallel to process data for publication please cite:
+redhat9.tange.dk	When using programs that use GNU Parallel to process data for publication please cite:

testsuite/wanted-results/sql03

@@ -46,7 +46,7 @@ Error:
 sql [-hnr] [--table-size] [--db-size] [-p pass-through] [-s string] dburl [command]
 ### Test dburl :
 Error:
-: is not defined in /home/tange/.sql/aliases /home/tange/.dburl.aliases /etc/sql/aliases /home/tange/bin/dburl.aliases /home/tange/bin/dburl.aliases.dist
+: is not defined in /home/tange/.sql/aliases /home/tange/.dburl.aliases /etc/sql/aliases /usr/local/bin/dburl.aliases /usr/local/bin/dburl.aliases.dist
 
 sql [-hnr] [--table-size] [--db-size] [-p pass-through] [-s string] dburl [command]
 ### Test oracle with multiple arguments on the command line

testsuite/wanted-results/test15

@@ -1,6 +1,6 @@
 ### Test -p --interactive
 spawn /tmp/parallel-script-for-expect
-When using GNU Parallel to process data for publication please cite:
+When using programs that use GNU Parallel to process data for publication please cite:
 
   O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
   ;login: The USENIX Magazine, February 2011:42-47.
@@ -14,7 +14,7 @@ sleep 0.1; echo opt-p 2 ?...n
 sleep 0.1; echo opt-p 3 ?...y
 opt-p 1
 opt-p 3
-When using GNU Parallel to process data for publication please cite:
+When using programs that use GNU Parallel to process data for publication please cite:
 
   O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
   ;login: The USENIX Magazine, February 2011:42-47.
@@ -199,7 +199,7 @@ xargs Expect: 3 1 2
 1
 2
 parallel Expect: 3 1 via psedotty  2
-When using GNU Parallel to process data for publication please cite:
+When using programs that use GNU Parallel to process data for publication please cite:
 
   O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
   ;login: The USENIX Magazine, February 2011:42-47.
@@ -217,7 +217,7 @@ xargs Expect: 1 3 2
 3
 2
 parallel Expect: 1 3 2 via pseudotty
-When using GNU Parallel to process data for publication please cite:
+When using programs that use GNU Parallel to process data for publication please cite:
 
   O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
   ;login: The USENIX Magazine, February 2011:42-47.