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Released as 20190222 ('Baghuz')

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Ole Tange 2019-02-22 22:20:59 +01:00
parent 321419c73a
commit fd4694c66b
14 changed files with 80 additions and 43 deletions
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32
NEWS
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@ -1,5 +1,37 @@
20190222 20190222
* --shard makes it possible to send input to a the same jobslot based
on the value in one column of the input. It is similar to sharding
in databases.
* --shellquote --shellquote will shell quote the input twice.
* GNU Parallel is available in Termux
https://github.com/termux/termux-packages/tree/master/packages/parallel
* Linux, command line & MetaCentrum
https://trapa.cz/sites/default/files/linux_bash_metacentrum_course_4.pdf
* How to supercharge your bash workflows with GNU parallel
https://medium.freecodecamp.org/how-to-supercharge-your-bash-workflows-with-gnu-parallel-53aab0aea141
* GNU Parallel Spring 2017 https://www.youtube.com/watch?v=LHb29uW_KyI
* Parallelizing Freesurfer blog.cogneurostats.com/?p=148
* FreeSurfer #4: Running recon-all in Parallel https://www.youtube.com/watch?v=XHN2tm3tNaw
* FreeSurfer: recon-all https://www.neurotrivial.com/2019/01/24/freesurfer-recon-all/
* Come ridimensionare 10k foto con la riga di comando
https://pigrecoinfinito.wordpress.com/2018/12/22/come-ridimensionare-10k-foto-con-la-riga-di-comando/
* 并行处理 – Gnu Parallel：嵌套并行
https://codeday.me/bug/20190122/552902.html
* シェルスクリプトでコマンドを並列実行する方法
https://www.kwbtblog.com/entry/2019/01/12/020423
* Bug fixes and man page updates. * Bug fixes and man page updates.

12
README
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@ -44,9 +44,9 @@ document.
Full installation of GNU Parallel is as simple as: Full installation of GNU Parallel is as simple as:
wget https://ftpmirror.gnu.org/parallel/parallel-20190122.tar.bz2 wget https://ftpmirror.gnu.org/parallel/parallel-20190222.tar.bz2
bzip2 -dc parallel-20190122.tar.bz2 | tar xvf - bzip2 -dc parallel-20190222.tar.bz2 | tar xvf -
cd parallel-20190122 cd parallel-20190222
./configure && make && sudo make install ./configure && make && sudo make install
@ -55,9 +55,9 @@ Full installation of GNU Parallel is as simple as:
If you are not root you can add ~/bin to your path and install in If you are not root you can add ~/bin to your path and install in
~/bin and ~/share: ~/bin and ~/share:
wget https://ftpmirror.gnu.org/parallel/parallel-20190122.tar.bz2 wget https://ftpmirror.gnu.org/parallel/parallel-20190222.tar.bz2
bzip2 -dc parallel-20190122.tar.bz2 | tar xvf - bzip2 -dc parallel-20190222.tar.bz2 | tar xvf -
cd parallel-20190122 cd parallel-20190222
./configure --prefix=$HOME && make && make install ./configure --prefix=$HOME && make && make install
Or if your system lacks 'make' you can simply copy src/parallel Or if your system lacks 'make' you can simply copy src/parallel

20
configure vendored
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@ -1,6 +1,6 @@
#! /bin/sh #! /bin/sh
# Guess values for system-dependent variables and create Makefiles. # Guess values for system-dependent variables and create Makefiles.
# Generated by GNU Autoconf 2.69 for parallel 20190122. # Generated by GNU Autoconf 2.69 for parallel 20190222.
# #
# Report bugs to <bug-parallel@gnu.org>. # Report bugs to <bug-parallel@gnu.org>.
# #
@ -579,8 +579,8 @@ MAKEFLAGS=
# Identity of this package. # Identity of this package.
PACKAGE_NAME='parallel' PACKAGE_NAME='parallel'
PACKAGE_TARNAME='parallel' PACKAGE_TARNAME='parallel'
PACKAGE_VERSION='20190122' PACKAGE_VERSION='20190222'
PACKAGE_STRING='parallel 20190122' PACKAGE_STRING='parallel 20190222'
PACKAGE_BUGREPORT='bug-parallel@gnu.org' PACKAGE_BUGREPORT='bug-parallel@gnu.org'
PACKAGE_URL='' PACKAGE_URL=''
@ -1214,7 +1214,7 @@ if test "$ac_init_help" = "long"; then
# Omit some internal or obsolete options to make the list less imposing. # Omit some internal or obsolete options to make the list less imposing.
# This message is too long to be a string in the A/UX 3.1 sh. # This message is too long to be a string in the A/UX 3.1 sh.
cat <<_ACEOF cat <<_ACEOF
\`configure' configures parallel 20190122 to adapt to many kinds of systems. \`configure' configures parallel 20190222 to adapt to many kinds of systems.
Usage: $0 [OPTION]... [VAR=VALUE]... Usage: $0 [OPTION]... [VAR=VALUE]...
@ -1281,7 +1281,7 @@ fi
if test -n "$ac_init_help"; then if test -n "$ac_init_help"; then
case $ac_init_help in case $ac_init_help in
short | recursive ) echo "Configuration of parallel 20190122:";; short | recursive ) echo "Configuration of parallel 20190222:";;
esac esac
cat <<\_ACEOF cat <<\_ACEOF
@ -1357,7 +1357,7 @@ fi
test -n "$ac_init_help" && exit $ac_status test -n "$ac_init_help" && exit $ac_status
if $ac_init_version; then if $ac_init_version; then
cat <<\_ACEOF cat <<\_ACEOF
parallel configure 20190122 parallel configure 20190222
generated by GNU Autoconf 2.69 generated by GNU Autoconf 2.69
Copyright (C) 2012 Free Software Foundation, Inc. Copyright (C) 2012 Free Software Foundation, Inc.
@ -1374,7 +1374,7 @@ cat >config.log <<_ACEOF
This file contains any messages produced by compilers while This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake. running configure, to aid debugging if configure makes a mistake.
It was created by parallel $as_me 20190122, which was It was created by parallel $as_me 20190222, which was
generated by GNU Autoconf 2.69. Invocation command line was generated by GNU Autoconf 2.69. Invocation command line was
$ $0 $@ $ $0 $@
@ -2237,7 +2237,7 @@ fi
# Define the identity of the package. # Define the identity of the package.
PACKAGE='parallel' PACKAGE='parallel'
VERSION='20190122' VERSION='20190222'
cat >>confdefs.h <<_ACEOF cat >>confdefs.h <<_ACEOF
@ -2880,7 +2880,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
# report actual input values of CONFIG_FILES etc. instead of their # report actual input values of CONFIG_FILES etc. instead of their
# values after options handling. # values after options handling.
ac_log=" ac_log="
This file was extended by parallel $as_me 20190122, which was This file was extended by parallel $as_me 20190222, which was
generated by GNU Autoconf 2.69. Invocation command line was generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES = $CONFIG_FILES CONFIG_FILES = $CONFIG_FILES
@ -2942,7 +2942,7 @@ _ACEOF
cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
ac_cs_version="\\ ac_cs_version="\\
parallel config.status 20190122 parallel config.status 20190222
configured by $0, generated by GNU Autoconf 2.69, configured by $0, generated by GNU Autoconf 2.69,
with options \\"\$ac_cs_config\\" with options \\"\$ac_cs_config\\"

2
configure.ac
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@ -1,4 +1,4 @@
AC_INIT([parallel], [20190122], [bug-parallel@gnu.org]) AC_INIT([parallel], [20190222], [bug-parallel@gnu.org])
AM_INIT_AUTOMAKE([-Wall -Werror foreign]) AM_INIT_AUTOMAKE([-Wall -Werror foreign])
AC_CONFIG_HEADERS([config.h]) AC_CONFIG_HEADERS([config.h])
AC_CONFIG_FILES([ AC_CONFIG_FILES([

25
doc/release_new_version
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@ -220,22 +220,29 @@ Quote of the month:
New in this release: New in this release:
https://trapa.cz/sites/default/files/linux_bash_metacentrum_course_4.pdf * --shard makes it possible to send input to a the same jobslot based on the value in one column of the input. It is similar to sharding in databases.
https://medium.freecodecamp.org/how-to-supercharge-your-bash-workflows-with-gnu-parallel-53aab0aea141 * --shellquote --shellquote will shell quote the input twice.
* GNU Parallel is available in Termux https://github.com/termux/termux-packages/tree/master/packages/parallel * GNU Parallel is available in Termux https://github.com/termux/termux-packages/tree/master/packages/parallel
https://www.youtube.com/watch?v=LHb29uW_KyI * Linux, command line & MetaCentrum https://trapa.cz/sites/default/files/linux_bash_metacentrum_course_4.pdf
* blog.cogneurostats.com/?p=148 * How to supercharge your bash workflows with GNU parallel https://medium.freecodecamp.org/how-to-supercharge-your-bash-workflows-with-gnu-parallel-53aab0aea141
https://www.neurotrivial.com/2019/01/24/freesurfer-recon-all/ * GNU Parallel Spring 2017 https://www.youtube.com/watch?v=LHb29uW_KyI
https://pigrecoinfinito.wordpress.com/2018/12/22/come-ridimensionare-10k-foto-con-la-riga-di-comando/
https://codeday.me/bug/20190122/552902.html
https://www.kwbtblog.com/entry/2019/01/12/020423
* https://www.youtube.com/watch?v=XHN2tm3tNaw * Parallelizing Freesurfer blog.cogneurostats.com/?p=148
* FreeSurfer #4: Running recon-all in Parallel https://www.youtube.com/watch?v=XHN2tm3tNaw
* FreeSurfer: recon-all https://www.neurotrivial.com/2019/01/24/freesurfer-recon-all/
* Come ridimensionare 10k foto con la riga di comando https://pigrecoinfinito.wordpress.com/2018/12/22/come-ridimensionare-10k-foto-con-la-riga-di-comando/
* 并行处理 – Gnu Parallel：嵌套并行 https://codeday.me/bug/20190122/552902.html
* シェルスクリプトでコマンドを並列実行する方法https://www.kwbtblog.com/entry/2019/01/12/020423
* Bug fixes and man page updates. * Bug fixes and man page updates.

10
packager/obs/home:tange/parallel/.osc/_files
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@ -1,6 +1,6 @@
<directory name="parallel" rev="230" srcmd5="dae05e9a043866038c83e6f5a5e56c3e" vrev="2"> <directory name="parallel" rev="232" srcmd5="45591c7f6bfc52dfd9aa690a14a31a4c" vrev="2">
<entry md5="01a210240252d9618a5c17b12c585d54" mtime="1548036048" name="parallel-20190122.tar.bz2" size="1793620" /> <entry md5="58a492714cee48a39d785e4efb597a83" mtime="1550870169" name="parallel-20190222.tar.bz2" size="1836447" />
<entry md5="13c250f5c33508b6d2f44544c38215ab" mtime="1548035924" name="parallel.spec" size="4667" /> <entry md5="dc24d3784e8be2bcd01dafbd7ee3b918" mtime="1550870135" name="parallel.spec" size="4667" />
<entry md5="ec9efb3ebd9f192e9104ebd37269f579" mtime="1548035925" name="parallel_20190122.dsc" size="556" /> <entry md5="9090ce7615a2d675f6b5d238ba5ffe41" mtime="1550870135" name="parallel_20190222.dsc" size="556" />
<entry md5="f74e15e4b9c93b4fc0793b979faf3200" mtime="1548035961" name="parallel_20190122.tar.gz" size="1997144" /> <entry md5="847f864bd968638882ddfc0d43bd2115" mtime="1550870136" name="parallel_20190222.tar.gz" size="2032210" />
</directory> </directory>

2
packager/obs/home:tange/parallel/.osc/parallel.spec
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@ -1,7 +1,7 @@
Summary: Shell tool for executing jobs in parallel Summary: Shell tool for executing jobs in parallel
Name: parallel Name: parallel
Version: 20190122 Version: 20190222
Release: 1.2 Release: 1.2
License: GPL License: GPL
Group: Productivity/File utilities Group: Productivity/File utilities

2
packager/obs/home:tange/parallel/parallel.spec
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@ -1,7 +1,7 @@
Summary: Shell tool for executing jobs in parallel Summary: Shell tool for executing jobs in parallel
Name: parallel Name: parallel
Version: 20190122 Version: 20190222
Release: 1.2 Release: 1.2
License: GPL License: GPL
Group: Productivity/File utilities Group: Productivity/File utilities

2
src/niceload
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@ -23,7 +23,7 @@
use strict; use strict;
use Getopt::Long; use Getopt::Long;
$Global::progname="niceload"; $Global::progname="niceload";
$Global::version = 20190123; $Global::version = 20190222;
Getopt::Long::Configure("bundling","require_order"); Getopt::Long::Configure("bundling","require_order");
get_options_from_array(\@ARGV) || die_usage(); get_options_from_array(\@ARGV) || die_usage();
if($opt::version) { if($opt::version) {

2
src/parallel
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@ -1698,7 +1698,7 @@ sub check_invalid_option_combinations() {
sub init_globals() { sub init_globals() {
# Defaults: # Defaults:
$Global::version = 20190123; $Global::version = 20190222;
$Global::progname = 'parallel'; $Global::progname = 'parallel';
$Global::infinity = 2**31; $Global::infinity = 2**31;
$Global::debug = 0; $Global::debug = 0;

2
src/parallel.pod
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@ -3311,7 +3311,7 @@ repeat the list and use replacement string B<{choose_k}>:
parallel --plus echo arg2 {2choose_k} arg1 {1choose_k} ::: A B C D ::: A B C D parallel --plus echo arg2 {2choose_k} arg1 {1choose_k} ::: A B C D ::: A B C D
B<choose_k> works for any number of input sources: B<{choose_k}> works for any number of input sources:
parallel --plus echo {choose_k} ::: A B C D ::: A B C D ::: A B C D parallel --plus echo {choose_k} ::: A B C D ::: A B C D ::: A B C D

6
src/parallel_alternatives.pod
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@ -1879,10 +1879,10 @@ https://github.com/fd0/machma (Last checked: 2019-01)
B<interlace> is built for network analysis to run network tools in parallel. B<interlace> is built for network analysis to run network tools in parallel.
B<interface> does not buffer output, so output mixes. B<interface> does not buffer output, so output from different jobs mixes.
Using B<prips> the examples from https://github.com/codingo/Interlace Using B<prips> most of the examples from
can be run with GNU B<parallel>: https://github.com/codingo/Interlace can be run with GNU B<parallel>:
interlace -tL ./targets.txt -threads 5 \ interlace -tL ./targets.txt -threads 5 \
-c "nikto --host _target_ > ./_target_-nikto.txt" -v -c "nikto --host _target_ > ./_target_-nikto.txt" -v

2
src/sql
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@ -574,7 +574,7 @@ $Global::Initfile && unlink $Global::Initfile;
exit ($err); exit ($err);
sub parse_options { sub parse_options {
$Global::version = 20190123; $Global::version = 20190222;
$Global::progname = 'sql'; $Global::progname = 'sql';
# This must be done first as this may exec myself # This must be done first as this may exec myself

4
testsuite/wanted-results/parallel-tutorial
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@ -867,7 +867,6 @@ MFLAGS
OLDPWD OLDPWD
ORACLE_HOME ORACLE_HOME
ORACLE_SID ORACLE_SID
PARALLEL PARALLEL
PARALLEL_HOME PARALLEL_HOME
PARALLEL_PID PARALLEL_PID
@ -1419,7 +1418,6 @@ The second finished running in the foreground
First started First started
First done First done
sem --id my_id -u 'echo Second started; sleep 10; echo Second done' sem --id my_id -u 'echo Second started; sleep 10; echo Second done'
Second done
sem --jobs 3 --id my_id -u 'echo Start 1; sleep 5; echo 1 done' && sem --jobs 3 --id my_id -u 'echo Start 1; sleep 5; echo 1 done' &&
sem --jobs 3 --id my_id -u 'echo Start 2; sleep 6; echo 2 done' && sem --jobs 3 --id my_id -u 'echo Start 2; sleep 6; echo 2 done' &&
sem --jobs 3 --id my_id -u 'echo Start 3; sleep 7; echo 3 done' && sem --jobs 3 --id my_id -u 'echo Start 3; sleep 7; echo 3 done' &&
@ -1440,8 +1438,8 @@ Start 4
Slow started Slow started
Forced running after 1 sec Forced running after 1 sec
Slow ended Slow ended
Give up after 2 secs
parallel: Warning: Semaphore timed out. Stealing the semaphore. parallel: Warning: Semaphore timed out. Stealing the semaphore.
parallel: Warning: Semaphore timed out. Exiting.
parallel --help parallel --help
Usage: Usage: