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Fixed bug #47695: How to set $PATH on remote?
This commit is contained in:
Ole Tange
parent
51f212e548
commit
ff27e601bf
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@ -258,6 +258,10 @@ for Big Data Applications https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumb
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* <<link No citation: Next-generation TCP for ns-3 simulator http://www.sciencedirect.com/science/article/pii/S1569190X15300939>>
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* GNU Parallel is a fantastic utility https://www.dray.be/parallel/
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* Tools of the trade http://onox.com.br/2015/05/tools-of-the-trade/#more-198
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* Bug fixes and man page updates.
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GNU Parallel - For people who live life in the parallel lane.
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38
src/parallel
38
src/parallel
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@ -2944,7 +2944,7 @@ sub setup_basefile {
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::wait_and_exit(255);
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}
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if(not $workdir) {
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my $dummycmdline = CommandLine->new(1,"true",0,0,0,0,0,{},{},{});
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my $dummycmdline = CommandLine->new(1,["true"],{},0,0,[],[],{},{},{});
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my $dummyjob = Job->new($dummycmdline);
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$workdir = $dummyjob->workdir();
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}
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@ -3037,7 +3037,6 @@ sub parse_host_filtering {
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# \%echo = echo received from {host}
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# \@down_hosts = list of hosts with no answer
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my (%ncores, %ncpus, %time_to_login, %maxlen, %echo, @down_hosts);
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for (@_) {
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::debug("init",$_);
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chomp;
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@ -3052,7 +3051,8 @@ sub parse_host_filtering {
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next;
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}
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# Get server from: eval true server\;
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$col[8] =~ /eval true..([^;]+).;/ or ::die_bug("col8 does not contain host: $col[8]");
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$col[8] =~ /eval true..([^;]+).;/ or
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::die_bug("col8 does not contain host: $col[8]");
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my $host = $1;
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$host =~ tr/\\//d;
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$Global::host{$host} or next;
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@ -3122,20 +3122,32 @@ sub parallelized_host_filtering {
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# * hostname \t number of cpus
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# * hostname \t max-line-length-allowed
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# * hostname \t empty
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sub sshwrapped {
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# Wrap with ssh and --env
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my $sshlogin = shift;
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my $command = shift;
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my $commandline = CommandLine->new(1,[$command],{},0,0,[],[],{},{},{});
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my $job = Job->new($commandline);
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$job->set_sshlogin($sshlogin);
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$job->wrapped();
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return($job->{'wrapped'});
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}
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my(@cores, @cpus, @maxline, @echo);
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my $envvar = ::shell_quote_scalar($Global::envvar);
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while (my ($host, $sshlogin) = each %Global::host) {
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if($host eq ":") { next }
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# The 'true' is used to get the $host out later
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push(@cores, $host."\t"."true $host; ".
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sshwrapped($sshlogin,"parallel --number-of-cores")."\n\0");
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push(@cpus, $host."\t"."true $host; ".
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sshwrapped($sshlogin,"parallel --number-of-cpus")."\n\0");
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push(@maxline, $host."\t"."true $host; ".
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sshwrapped($sshlogin,"parallel --max-line-length-allowed")."\n\0");
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# 'echo' is used to get the fastest possible ssh login time
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my $sshcmd = "true $host; exec " .$sshlogin->sshcommand()." ".
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$sshlogin->serverlogin();
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push(@cores, $host."\t".$sshcmd." -- ".$envvar.
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" parallel --number-of-cores\n\0");
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push(@cpus, $host."\t".$sshcmd." -- ".$envvar.
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" parallel --number-of-cpus\n\0");
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push(@maxline, $host."\t".$sshcmd." -- ".$envvar.
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" parallel --max-line-length-allowed\n\0");
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# 'echo' is used to get the best possible value for an ssh login time
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push(@echo, $host."\t".$sshcmd." -- echo\n\0");
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}
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my ($fh, $tmpfile) = ::tmpfile(SUFFIX => ".ssh");
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@ -3147,11 +3159,11 @@ sub parallelized_host_filtering {
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# will make it less likely to overload the ssh daemon.
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# --retries 3: If the ssh daemon it overloaded, try 3 times
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# -s 16000: Half of the max line on UnixWare
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# TODO sh -c wrapper to work in csh
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my $unlinkcmd = $Global::debug ? "true" : "rm $tmpfile";
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my $cmd = "($unlinkcmd; cat -) < $tmpfile | ".
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"$0 -j0 --timeout 10 -s 16000 --joblog - --plain --delay 0.1 --retries 3 ".
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"--tag --tagstring {1} -0 --colsep '\t' -k eval {2} 2>/dev/null";
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"$0 -j0 --timeout 10 --joblog - --plain --delay 0.1 --retries 3 ".
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"--tag --tagstring '{1}' -0 --colsep '\t' -k eval '{2}' ";
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$cmd = $Global::shell." -c ".::shell_quote_scalar($cmd);
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::debug("init", $cmd, "\n");
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my @out;
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my $prepend = "";
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@ -84,3 +84,35 @@ echo '### exported function to csh but with PARALLEL_SHELL=bash'
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PARALLEL_SHELL=bash parallel --env doit -S csh@lo doit ::: OK
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EOF
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echo 'bug #47695: How to set $PATH on remote?'
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rm -rf /tmp/parallel
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cp /usr/local/bin/parallel /tmp
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cat <<'_EOS' | stdout ssh nopathbash@lo -T
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echo BASH Path before: $PATH with no parallel
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parallel echo ::: 1
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echo '^^^^^^^^ Not found is OK'
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# Exporting a big variable should not fail
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export A="`seq 1000`"
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PATH=$PATH:/tmp
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. /usr/local/bin/env_parallel.bash
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# --filter to see if $PATH with parallel is transferred
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env_parallel --filter --env A,PATH -Slo echo '$PATH' ::: OK
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_EOS
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echo
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cat <<'_EOS' | stdout ssh nopathcsh@lo -T
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echo CSH Path before: $PATH with no parallel
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which parallel >& /dev/stdout
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echo '^^^^^^^^ Not found is OK'
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alias parallel=/tmp/parallel
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# Exporting a big variable should not fail
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setenv A "`seq 1000`"
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setenv PATH ${PATH}:/tmp
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cp /usr/local/bin/env_parallel.csh /tmp
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# --filter to see if $PATH with parallel is transferred
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env_parallel --filter --env A,PATH -Slo echo '$PATH' ::: OK
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_EOS
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@ -122,3 +122,31 @@ echo '### exported function to csh but with PARALLEL_SHELL=bash'
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doit() { echo "$1"; }; export -f doit; stdout parallel --env doit -S csh@lo doit ::: not_OK; PARALLEL_SHELL=bash parallel --env doit -S csh@lo doit ::: OK
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CSH/TCSH DO NOT SUPPORT newlines IN VARIABLES/FUNCTIONS. Unset doit
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OK
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bug #47695: How to set $PATH on remote?
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Welcome to Linux Mint 17 Qiana (GNU/Linux 3.16.0-31-lowlatency x86_64)
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Welcome to Linux Mint
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* Documentation: http://www.linuxmint.com
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195 packages can be updated.
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0 updates are security updates.
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BASH Path before: /bin:/usr/bin with no parallel
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-bash: line 2: parallel: command not found
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^^^^^^^^ Not found is OK
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/bin:/usr/bin:/tmp OK
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Welcome to Linux Mint 17 Qiana (GNU/Linux 3.16.0-31-lowlatency x86_64)
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Welcome to Linux Mint
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* Documentation: http://www.linuxmint.com
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195 packages can be updated.
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0 updates are security updates.
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Warning: no access to tty (Bad file descriptor).
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Thus no job control in this shell.
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CSH Path before: /bin:/usr/bin with no parallel
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parallel: Command not found.
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^^^^^^^^ Not found is OK
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/bin:/usr/bin:/tmp OK
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