= Notes on how to release new version = == alpha/beta/production == Check that documentation is updated (compare to web): Fixet for 20170222 git diff last-release-commit Unmodified beta since last version => production Unmodified alpha since last version => beta Modified => alpha == Update version == configure.ac: AC_INIT([parallel], [20100422], [bug-parallel@gnu.org]) src/parallel: $Global::version = 20100422; README: parallel-20130222 YYYYMMDD=$(echo `yyyymmdd`+1 | bc) YYYYMMDD=`yyyymmdd` echo $YYYYMMDD perl -i -pe "s/20\d\d\d\d\d\d/$YYYYMMDD/" configure.ac perl -i -pe "/version/ and s/20\d\d\d\d\d\d/$YYYYMMDD/" src/parallel perl -i -pe "/version/ and s/20\d\d\d\d\d\d/$YYYYMMDD/" src/sql perl -i -pe "/version/ and s/20\d\d\d\d\d\d/$YYYYMMDD/" src/niceload perl -i -pe "s/parallel-20\d\d\d\d\d\d/parallel-$YYYYMMDD/" README === Autoconf/automake === rm -fr autom4te.cache aclocal.m4 config.h config.h.in config.log Makefile.in missing install-sh rm -rf src/Makefile.in autoreconf --install -W gnu ./configure make -j && sudo make install == Testsuite == cd testsuite; make mem; make == Update NEWS == With the same things that goes in the announce mail == Package == ./configure make dist make dist-bzip2 == Test the package == YYYYMMDD=`yyyymmdd` cp parallel-$YYYYMMDD.tar.bz2 /tmp pushd /tmp tar xjvf parallel-$YYYYMMDD.tar.bz2 cd parallel-$YYYYMMDD ./configure && make -j && sudo make -j install pushd == Upload == YYYYMMDD=`yyyymmdd` export YYYYMMDD eval `gpg-agent --daemon` # Takes up to 8 minutes make upload # Only needed for alpha: YYYYMMDD=`yyyymmdd` export YYYYMMDD eval `gpg-agent --daemon` # Takes up to 8 minutes make alphaupload == Update OpenSUSE build system == cd ~/privat/parallel/packager/obs # Update version number em home:tange/parallel/parallel.spec find home:tange/parallel/* -type f | grep -v parallel.spec | parallel -Xj1 osc rm {} # This should not create new files osc up home:tange/parallel/ make # Reload build-status: https://build.opensuse.org/package/show?package=parallel&project=home%3Atange # Check that one .deb (Debian 5.0) and one .rpm (CentOS) end with 'succeeded' == Download and test == # Only needed for alpha (part of 'make upload') YYYYMMDD=`yyyymmdd` pushd /tmp rm -rf parallel-${YYYYMMDD}* # This can take 7 minutes #while ! wget http://ftp.gnu.org/gnu/parallel/parallel-$YYYYMMDD.tar.bz2 ; do sleep 2; done while ! wget http://alpha.gnu.org/gnu/parallel/parallel-$YYYYMMDD.tar.bz2 ; do sleep 2; done tar xjvf parallel-$YYYYMMDD.tar.bz2 cd parallel-$YYYYMMDD ./configure make -j && sudo make -j install pushd sudo cp /usr/local/bin/parallel /usr/local/bin/parallel-$YYYYMMDD == Update website == http://www.gnu.org/software/parallel/ http://www.gnu.org/software/parallel/man.html http://www.gnu.org/software/parallel/sql.html http://www.gnu.org/software/parallel/sem.html http://www.gnu.org/software/parallel/niceload.html cp src/*.pdf src/*.html ../parallel-web/parallel cp src/parallel.html ../parallel-web/parallel/man.html pushd ../parallel-web/parallel cvs up cvs ci -m "New release" pushd == Commit released version == git diff # Recheck OBS https://build.opensuse.org/package/show?package=parallel&project=home%3Atange YYYYMMDD=`yyyymmdd` TAG=MyTag echo "Released as $YYYYMMDD ('$TAG')." git commit -a -m "Released as $YYYYMMDD ('$TAG')" git tag -s -u 88888888 -m "Released as $YYYYMMDD ('$TAG')" $TAG git tag -s -u 88888888 -m "Released as $YYYYMMDD ('$TAG')" $YYYYMMDD git push git push origin $TAG git push origin $YYYYMMDD == Update documentation == Update version number + 1 YYYYMMDD=$(echo `yyyymmdd`+1 | bc) perl -i -pe "/version/ and s/20\d\d\d\d\d\d/$YYYYMMDD/" src/parallel perl -i -pe "/version/ and s/20\d\d\d\d\d\d/$YYYYMMDD/" src/sql perl -i -pe "/version/ and s/20\d\d\d\d\d\d/$YYYYMMDD/" src/niceload Unmodified beta since last version => production Unmodified alpha since last version => beta Modified => alpha == Update Savannah == file:///home/tange/privat/parallel/doc/release_new_version Content from release mail: https://savannah.gnu.org/news/submit.php?group=parallel Test URLs. https://savannah.gnu.org/news/approve.php?group=parallel == Update Freshmeat == // FreeCode is dying http://freshmeat.net/projects/parallel/releases/new == Update Diaspora Twitter == https://joindiaspora.com/stream New release of #GNU Parallel pi․dk/0 New in this release pi․dk/2 See the intro videos pi․dk/1 10 secs installation: wget -O - pi․dk/3|bash [x] Twitter Aspect: Public GNU Parallel - for people who live life in the parallel lane. == Send announce == http://groups.google.com/group/comp.unix.shell/post http://groups.google.com/group/comp.unix.admin/post https://lists.gnu.org/mailman/admindb/bug-parallel https://lists.gnu.org/mailman/admindb/parallel <<<<< file:///home/tange/privat/parallel/doc/release_new_version from:tange@gnu.org to:parallel@gnu.org, bug-parallel@gnu.org Subject: GNU Parallel 20170222 ('13769') released <<[stable]>> GNU Parallel 20170222 ('13769') <<[stable]>> has been released. It is available for download at: http://ftpmirror.gnu.org/parallel/ <> Haiku of the month: Alias and vars export them more easily With env parallel -- Ole Tange New in this release: * env_parallel now supports /bin/sh, ash, dash. * --tee will pipe all data to all jobs. Used with --pipe/--pipepart and :::. Small example: seq 3333 | parallel --pipe --tee --tag 'grep {} | wc -l' ::: {0..9} * If --results {replstr} ends in /: save in dir. Otherwise save as file. Example: parallel --results {} echo {} ::: a b c * Vote for GNU Parallel's community ads on http://meta.unix.stackexchange.com/a/4356/2972 http://meta.askubuntu.com/a/16750/22307 http://meta.serverfault.com/a/9040/45704 * GNU Parallel was cited in: Low-delay forwarding with multiple candidates for VANETs using multi-criteria decision making http://ieeexplore.ieee.org/document/7835961/ * GNU Parallel was cited in: An Integrated Simulator and Dataset that Combines Grasping and Vision for Deep Learning https://arxiv.org/pdf/1702.02103.pdf * GNU Parallel was cited in: A Bayesian model selection approach for identifying differentially expressed transcripts from RNA sequencing data http://onlinelibrary.wiley.com/doi/10.1111/rssc.12213/full * GNU Parallel was cited in: The impact of copy number variation on gout, and the apple genome https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3 * GNU Parallel was cited in: Determination of crystal structures of proteins of unknown identity using a marathon molecular replacement procedure: structure of Stenotrophomonas maltophilia phosphate-binding protein https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein * GNU Parallel was cited in: Reaction rates for reaction-diffusion kinetics on unstructured meshes http://aip.scitation.org/doi/10.1063/1.4975167 * GNU Parallel was cited in: Modeling prediction error improves power of transcriptome-wide association studies http://biorxiv.org/content/biorxiv/early/2017/02/14/108316.full.pdf * GNU Parallel was cited in: Proper experimental design requires randomization/balancing of molecular ecology experiments http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf * GNU Parallel was cited in: Experiment-based thermal micromagnetic simulations of the magnetization reversal for ns-range clocked nanomagnetic logic http://aip.scitation.org/doi/full/10.1063/1.4974021 * GNU Parallel was cited in: The University of Edinburgh’s systems submission to the MT task at IWSLT http://workshop2016.iwslt.org/downloads/IWSLT_2016_paper_27.pdf * Fast-GBS uses GNU Parallel: https://bitbucket.org/jerlar73/fast-gbs * Job: DevOps Engineer/Senior Systems Administrator in New York, New York http://rockefeller.jobs/new-york-ny/devops-engineersenior-systems-administrator/2DB3408EAC9E4617AD238550F31C7641/job/ * Training in GNU Parallel: https://www.carc.unm.edu/education-outreach/workshops--training/ * Training in GNU Parallel: http://www.hpc.lsu.edu/training/registration.php?topic=Parallel%20Serial%20Jobs%20Using%20GNU%20Parallel&date=February%2022,%202017&time=9:00%20AM%20-%2011:00%20AM&place=307%20Frey&deadline=2017-02-21%2016:30:00 * Batch Convert Images from PNG to JPEG http://coreygoldberg.blogspot.dk/2017/02/batch-convert-images-from-png-to-jpeg.html * Accelerating Oxford Nanopore Basecalling http://fowlerlab.org/2017/01/26/accelerating-oxford-nanopore-basecalling/ * parallel и imagemagick в loop на bash https://www.linux.org.ru/forum/development/13190247 * <> * <> * <> * << kontakt GNU Parallel was used (unfortunately without citation) in: Instrumentation and Trace Analysis for Ad-hoc Python Workflows in Cloud Environments http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=7214035>> * <> GNU Parallel was used (unfortunately without citation) in: MUGBAS: a species free gene-based programme suite for post-GWAS analysis http://www.ncbi.nlm.nih.gov/pubmed/25765345 * <> GNU Parallel was used in: Large Scale Author Name Disambiguation in Digital Libraries http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7004487&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7004487 * <> GNU Parallel was used (unfortunately with wrong citation) in: TADSim: Discrete Event-Based Performance Prediction for Temperature-Accelerated Dynamics http://vruehle.de/publications/2015c.pdf http://www.researchgate.net/profile/Christoph_Junghans/publication/276178326_TADSim_Discrete_Event-Based_Performance_Prediction_for_Temperature-Accelerated_Dynamics/links/55562b6708ae980ca60c8369.pdf * << Update forventet juni Rachel har lige svaret >> GNU Parallel was used in: SISRS: Site Identification from Short Read Sequences https://github.com/rachelss/SISRS/ * <> * <> * <> * <> * <> * <> * <> * Bug fixes and man page updates. GNU Parallel - For people who live life in the parallel lane. = About GNU Parallel = GNU Parallel is a shell tool for executing jobs in parallel using one or more computers. A job can be a single command or a small script that has to be run for each of the lines in the input. The typical input is a list of files, a list of hosts, a list of users, a list of URLs, or a list of tables. A job can also be a command that reads from a pipe. GNU Parallel can then split the input and pipe it into commands in parallel. If you use xargs and tee today you will find GNU Parallel very easy to use as GNU Parallel is written to have the same options as xargs. If you write loops in shell, you will find GNU Parallel may be able to replace most of the loops and make them run faster by running several jobs in parallel. GNU Parallel can even replace nested loops. GNU Parallel makes sure output from the commands is the same output as you would get had you run the commands sequentially. This makes it possible to use output from GNU Parallel as input for other programs. You can find more about GNU Parallel at: http://www.gnu.org/s/parallel/ You can install GNU Parallel in just 10 seconds with: (wget -O - pi.dk/3 || curl pi.dk/3/) | bash Watch the intro video on http://www.youtube.com/playlist?list=PL284C9FF2488BC6D1 Walk through the tutorial (man parallel_tutorial). Your commandline will love you for it. When using programs that use GNU Parallel to process data for publication please cite: O. Tange (2011): GNU Parallel - The Command-Line Power Tool, ;login: The USENIX Magazine, February 2011:42-47. If you like GNU Parallel: * Give a demo at your local user group/team/colleagues * Post the intro videos on Reddit/Diaspora*/forums/blogs/ Identi.ca/Google+/Twitter/Facebook/Linkedin/mailing lists * Get the merchandise https://www.gnu.org/s/parallel/merchandise.html * Request or write a review for your favourite blog or magazine * Request or build a package for your favourite distribution (if it is not already there) * Invite me for your next conference If you use programs that use GNU Parallel for research: * Please cite GNU Parallel in you publications (use --citation) If GNU Parallel saves you money: * (Have your company) donate to FSF https://my.fsf.org/donate/ = About GNU SQL = GNU sql aims to give a simple, unified interface for accessing databases through all the different databases' command line clients. So far the focus has been on giving a common way to specify login information (protocol, username, password, hostname, and port number), size (database and table size), and running queries. The database is addressed using a DBURL. If commands are left out you will get that database's interactive shell. When using GNU SQL for a publication please cite: O. Tange (2011): GNU SQL - A Command Line Tool for Accessing Different Databases Using DBURLs, ;login: The USENIX Magazine, April 2011:29-32. = About GNU Niceload = GNU niceload slows down a program when the computer load average (or other system activity) is above a certain limit. When the limit is reached the program will be suspended for some time. If the limit is a soft limit the program will be allowed to run for short amounts of time before being suspended again. If the limit is a hard limit the program will only be allowed to run when the system is below the limit.