#!/usr/bin/env bash # This file must be sourced in bash: # # source `which env_parallel.bash` # # after which 'env_parallel' works # # # Copyright (C) 2016,2017 # Ole Tange and Free Software Foundation, Inc. # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, see # or write to the Free Software Foundation, Inc., 51 Franklin St, # Fifth Floor, Boston, MA 02110-1301 USA env_parallel() { # env_parallel.bash _names_of_ALIASES() { compgen -a } _bodies_of_ALIASES() { local _i for _i in $@; do if [ $(alias $_i | wc -l) == 1 ] ; then true Alias is a single line. Good. else _warning "Alias '$_i' contains newline." _warning "Make sure the command has at least one newline after '$_i'." _warning "See BUGS in 'man env_parallel'." fi done alias "$@" } _names_of_FUNCTIONS() { compgen -A function } _bodies_of_FUNCTIONS() { typeset -f "$@" } _names_of_VARIABLES() { compgen -A variable } _bodies_of_VARIABLES() { typeset -p "$@" } _remove_bad_NAMES() { # Do not transfer vars and funcs from env_parallel _remove_readonly() { _list_readonly() { readonly | perl -pe 's/^\S+\s+\S+\s+(\S[^=]*)=.*/$1/' } perl -e '$r=join("|",@ARGV); while() {/$r/o or print}' `_list_readonly` } # Macos-grep does not like long patterns # Old Solaris grep does not support -E # so 'grep' is converted to 'perl' # Perl Version of: # grep -Ev '^(_names_of_ALIASES|_bodies_of_ALIASES|_names_of_maybe_FUNCTIONS|_names_of_FUNCTIONS|_bodies_of_FUNCTIONS|_names_of_VARIABLES|_bodies_of_VARIABLES|_remove_bad_NAMES|_prefix_PARALLEL_ENV)$' | # grep -Ev '^(_get_ignored_VARS|_make_grep_REGEXP|_ignore_UNDERSCORE|_alias_NAMES|_list_alias_BODIES|_function_NAMES|_list_function_BODIES|_variable_NAMES|_list_variable_VALUES|_prefix_PARALLEL_ENV|PARALLEL_TMP)$' | perl -ne '/^(_names_of_ALIASES| _bodies_of_ALIASES| _names_of_maybe_FUNCTIONS| _names_of_FUNCTIONS| _bodies_of_FUNCTIONS| _names_of_VARIABLES| _bodies_of_VARIABLES| _remove_bad_NAMES| _remove_readonly| _prefix_PARALLEL_ENV| _get_ignored_VARS| _make_grep_REGEXP| _ignore_UNDERSCORE| _alias_NAMES| _list_alias_BODIES| _function_NAMES| _list_function_BODIES| _variable_NAMES| _list_variable_VALUES| _prefix_PARALLEL_ENV| PARALLEL_TMP)$/x or print' | # Filter names matching --env # perl version of: grep -E "^$_grep_REGEXP"\$ | grep -vE "^"\$ | perl -ne "/^$_grep_REGEXP"'$/ and not /^'"$_ignore_UNDERSCORE"'$/ and print' | _remove_readonly | # perl version of: grep -Ev '^(BASHOPTS|BASHPID|EUID|GROUPS|FUNCNAME|DIRSTACK|_|PIPESTATUS|PPID|SHELLOPTS|UID|USERNAME|BASH_[A-Z_]+)$' perl -ne 'not /^(BASHOPTS|BASHPID|EUID|GROUPS|FUNCNAME|DIRSTACK|_|PIPESTATUS|PPID|SHELLOPTS|UID|USERNAME|BASH_[A-Z_]+)$/ and print' } _prefix_PARALLEL_ENV() { shopt 2>/dev/null | perl -pe 's:\s+off:;: and s/^/shopt -u /; s:\s+on:;: and s/^/shopt -s /; s:;$:&>/dev/null;:'; echo 'shopt -s expand_aliases &>/dev/null'; } _get_ignored_VARS() { perl -e ' for(@ARGV){ $next_is_env and push @envvar, split/,/, $_; $next_is_env=/^--env$/; } if(grep { /^_$/ } @envvar) { if(not open(IN, "<", "$ENV{HOME}/.parallel/ignored_vars")) { print STDERR "parallel: Error: ", "Run \"parallel --record-env\" in a clean environment first.\n"; } else { chomp(@ignored_vars = ); $vars = join "|",map { quotemeta $_ } "env_parallel", @ignored_vars; print $vars ? "($vars)" : "(,,nO,,VaRs,,)"; } } ' -- "$@" } # Get the --env variables if set # --env _ should be ignored # and convert a b c to (a|b|c) # If --env not set: Match everything (.*) _make_grep_REGEXP() { perl -e ' for(@ARGV){ /^_$/ and $next_is_env = 0; $next_is_env and push @envvar, split/,/, $_; $next_is_env = /^--env$/; } $vars = join "|",map { quotemeta $_ } @envvar; print $vars ? "($vars)" : "(.*)"; ' -- "$@" } _which() { # type returns: # bash is a tracked alias for /bin/bash # true is a shell builtin # which is /usr/bin/which # which is hashed (/usr/bin/which) # aliased to `alias | /usr/bin/which --tty-only --read-alias --show-dot --show-tilde' # Return 0 if found, 1 otherwise type "$@" | perl -pe '$exit += (s/ is aliased to .*// || s/ is a shell builtin// || s/.* is hashed .(\S+).$/$1/ || s/.* is (a tracked alias for )?//); END { exit not $exit }' } _warning() { echo "env_parallel: Warning: $@" >&2 } # Bash is broken in version 3.2.25 and 4.2.39 # The crazy '[ "`...`" == "" ]' is needed for the same reason if [ "`_which parallel`" == "" ]; then echo 'env_parallel: Error: parallel must be in $PATH.' >&2 return 255 fi # Grep regexp for vars given by --env _grep_REGEXP="`_make_grep_REGEXP \"$@\"`" # Deal with --env _ _ignore_UNDERSCORE="`_get_ignored_VARS \"$@\"`" # --record-env # Bash is broken in version 3.2.25 and 4.2.39 # The crazy '[ "`...`" == 0 ]' is needed for the same reason if [ "`perl -e 'exit grep { /^--record-env$/ } @ARGV' -- "$@"; echo $?`" == 0 ] ; then true skip else (_names_of_ALIASES; _names_of_FUNCTIONS; _names_of_VARIABLES) | cat > $HOME/.parallel/ignored_vars return 0 fi # Grep alias names _alias_NAMES="`_names_of_ALIASES | _remove_bad_NAMES | xargs echo`" _list_alias_BODIES="_bodies_of_ALIASES $_alias_NAMES" if [ "$_alias_NAMES" = "" ] ; then # no aliases selected _list_alias_BODIES="true" fi unset _alias_NAMES # Grep function names _function_NAMES="`_names_of_FUNCTIONS | _remove_bad_NAMES | xargs echo`" _list_function_BODIES="_bodies_of_FUNCTIONS $_function_NAMES" if [ "$_function_NAMES" = "" ] ; then # no functions selected _list_function_BODIES="true" fi unset _function_NAMES # Grep variable names _variable_NAMES="`_names_of_VARIABLES | _remove_bad_NAMES | xargs echo`" _list_variable_VALUES="_bodies_of_VARIABLES $_variable_NAMES" if [ "$_variable_NAMES" = "" ] ; then # no variables selected _list_variable_VALUES="true" fi unset _variable_NAMES _which_true="`_which true`" # Copy shopt (so e.g. extended globbing works) # But force expand_aliases as aliases otherwise do not work PARALLEL_ENV="` _prefix_PARALLEL_ENV $_list_alias_BODIES; $_list_function_BODIES; $_list_variable_VALUES; `" export PARALLEL_ENV unset _list_alias_BODIES unset _list_variable_VALUES unset _list_function_BODIES unset _grep_REGEXP unset _ignore_UNDERSCORE # Test if environment is too big if [ "`_which true`" == "$_which_true" ] ; then `_which parallel` "$@"; _parallel_exit_CODE=$? unset PARALLEL_ENV; return $_parallel_exit_CODE else unset PARALLEL_ENV; echo "env_parallel: Error: Your environment is too big." >&2 echo "env_parallel: Error: Try running this in a clean environment once:" >&2 echo "env_parallel: Error: env_parallel --record-env" >&2 echo "env_parallel: Error: And the use '--env _'" >&2 echo "env_parallel: Error: For details see: man env_parallel" >&2 return 255 fi } parset() { _parset_parallel_prg=parallel _parset_main "$@" } env_parset() { _parset_parallel_prg=env_parallel _parset_main "$@" } _parset_main() { # If $1 contains ',' or space: # Split on , to get the destination variable names # If $1 is a single destination variable name: # Treat it as the name of an array # # # Create array named myvar # parset myvar echo ::: {1..10} # echo ${myvar[5]} # # # Put output into $var_a $var_b $var_c # varnames=(var_a var_b var_c) # parset "${varnames[*]}" echo ::: {1..3} # echo $var_c # # # Put output into $var_a4 $var_b4 $var_c4 # parset "var_a4 var_b4 var_c4" echo ::: {1..3} # echo $var_c4 _parset_name="$1" if [ "$_parset_name" = "" ] ; then echo parset: Error: No destination variable given. >&2 echo parset: Error: Try: >&2 echo parset: Error: ' ' parset myarray echo ::: foo bar >&2 return 255 fi shift echo "$_parset_name" | perl -ne 'chomp;for (split /[, ]/) { # Allow: var_32 var[3] if(not /^[a-zA-Z_][a-zA-Z_0-9]*(\[\d+\])?$/) { print STDERR "parset: Error: $_ is an invalid variable name.\n"; print STDERR "parset: Error: Variable names must be letter followed by letters or digits.\n"; $exitval = 255; } } exit $exitval; ' || return 255 if perl -e 'exit not grep /,| /, @ARGV' "$_parset_name" ; then # $_parset_name contains , or space # Split on , or space to get the names eval "$( # Compute results into files $_parset_parallel_prg --files -k "$@" | # var1=`cat tmpfile1; rm tmpfile1` # var2=`cat tmpfile2; rm tmpfile2` parallel -q echo {2}='`cat {1}; rm {1}`' :::: - :::+ $( echo "$_parset_name" | perl -pe 's/,/ /g' ) )" else # $_parset_name does not contain , or space # => $_parset_name is the name of the array to put data into # Supported in: bash zsh ksh # Arrays do not work in: ash dash eval "$_parset_name=( $( $_parset_parallel_prg --files -k "$@" | perl -pe 'chop;$_="\"\`cat $_; rm $_\`\" "' ) )" fi }