mirror of
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3603 lines
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3603 lines
128 KiB
Plaintext
20170622
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* The command line can now contain \257 (Macron) or UTF characters
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containing \257.
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* Vote for GNU Parallel's community ads on
|
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http://meta.unix.stackexchange.com/a/4356/2972
|
||
http://meta.askubuntu.com/a/16750/22307
|
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http://meta.serverfault.com/a/9040/45704
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* Graph for overhead for 1000 jobs has been updated. It remains
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steadily at 3.5 ms per job on a 1.7 GHz machine
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https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
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* GNU Parallel was cited in: The topology of the directed clique
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complex as a network invariant
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https://springerplus.springeropen.com/articles/10.1186/s40064-016-2022-y
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* GNU Parallel was cited in: Improving Optical Character Recognition
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||
of Finnish Historical Newspapers with a Combination of Fraktur &
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Antiqua Models and Image
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http://www.ep.liu.se/ecp/131/038/ecp17131038.pdf
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* GNU Parallel was cited in: Parallel Execution of Structural Mechanic
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Tasks with Use of Small Supercomputers
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http://www.sciencedirect.com/science/article/pii/S1877705817324815
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* GNU Parallel was cited in: Integration of a Multilingual Preordering
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Component into a Commercial SMT Platform
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https://www.degruyter.com/downloadpdf/j/pralin.2017.108.issue-1/pralin-2017-0009/pralin-2017-0009.pdf
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* Tips For Running Jobs On Your VM
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https://support.ehelp.edu.au/support/solutions/articles/6000089713-tips-for-running-jobs-on-your-vm#parallel
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* Speed up ML model development with GNU Parallel
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https://pzelasko.github.io/posts/speed-up-ml-model-development-with-gnu-parallel
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* Parallelizing a Python Function for the Extremely Lazy
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http://tdhopper.com/blog/2017/Jun/07/parallelizing-a-python-function-for-the-extremely-lazy/
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* 使用GNU parallel
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||
http://www.android5.online/Android/androidjc/androidkf/gykf/201603/8741.html
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* Bug fixes and man page updates.
|
||
|
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20170522
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* --timeout can now use s=second,m=minute,h=hour,d=day.
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* --dr is now an alias for --dry-run.
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||
|
||
* Vote for GNU Parallel's community ads on
|
||
http://meta.unix.stackexchange.com/a/4356/2972
|
||
http://meta.askubuntu.com/a/16750/22307
|
||
http://meta.serverfault.com/a/9040/45704
|
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|
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* GNU Parallel was cited in: Feature Detection in Visual Cortex during
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Different Functional States
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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397493/
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* GNU Parallel was cited in: From genotype to phenotype: inferring
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relationships between microbial traits and genomic components
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https://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-44622/main.pdf
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* GNU Parallel was cited in: Designing fecal microbiota transplant
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trials that account for differences in donor stool efficacy
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http://biorxiv.org/content/biorxiv/early/2016/07/25/065383.full.pdf
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* GNU Parallel was cited in: Assessing the predictability of
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anharmonic vibrational modes at the example of hydroxyl groups - ad
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hoc construction of localised modes and the influence of structural
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solute–solvent motifs
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http://pubs.rsc.org/-/content/articlelanding/2017/cp/c7cp01662j#!divAbstract
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* GNU Parallel was cited in: Mapping Environmental Influences on
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Utility Fire Threat
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ftp://frapftp.fire.ca.gov/outgoing/transfer/PUC_Map1/Utility%20Fire%20map%201%20final%20review%20and%20development%20report21616.pdf
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* GNU Parallel was cited in: Weak vs. Strong Disorder Superfluid-Bose
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Glass Transition in One Dimension
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https://arxiv.org/pdf/1704.02257.pdf
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* GNU Parallel was cited in: Online Automatic Post-editing for MT in a
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Multi-Domain Translation Environment
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https://www.aclweb.org/anthology/E/E17/E17-1050.pdf
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* GNU Parallel was cited in: Cross-calibration of S-NPP VIIRS
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moderate-resolution reflective solar bands against MODIS Aqua over
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dark water scenes
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http://www.atmos-meas-tech.net/10/1425/2017/amt-10-1425-2017.pdf
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* GNU Parallel was cited in: Scattering Networks: Efficient 2D
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Implementation And Application To Melanoma Classification
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http://amslaurea.unibo.it/12261/1/nurrito_eugenio_tesi_fisica_magistrale.pdf
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* GNU Parallel was cited in: Genome-scale detection of positive
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selection in 9 primates predicts human-virus evolutionary conflicts
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http://biorxiv.org/content/biorxiv/early/2017/04/27/131680.full.pdf
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|
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* GNU Parallel is used in: Creates a speech dataset for deep learning
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https://github.com/jupiter126/Create_Speech_Dataset
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* GNU Parallel is used in: Parse and process the demixing secrets
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dataset (DSD100) https://github.com/faroit/dsdtools
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* First glance at the gnu parallel utility
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https://ibiscybernetics.com/blog/2017-04-05.html
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* Installing parallel from source
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||
https://bitsanddragons.wordpress.com/2017/05/03/installing-parallel-from-source/
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* How to run command or code in parallel in bash shell under Linux or
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Unix
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https://www.cyberciti.biz/faq/how-to-run-command-or-code-in-parallel-in-bash-shell-under-linux-or-unix/
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* Parallel Serial Jobs Using GNU Parallel
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http://www.hpc.lsu.edu/training/weekly-materials/2017-Spring/gnuparallel-Feb2017.pdf
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* GNU Parallel or How to list millions of S3 objects
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https://joeray.me/gnu-parallel-how-to-list-millions-objects.html
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* Which Is the Best Tool for Copying a Large Directory Tree Locally?
|
||
http://arjon.es/2017/05/11/which-is-the-best-tool-for-copying-a-large-directory-tree-locally/
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|
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* Bug fixes and man page updates.
|
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|
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20170422
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* --halt supports done in addition to success and fail.
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* parset will set variables in parallel in Bash.
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|
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* Perl 5.6 on Irix is no longer supported.
|
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|
||
* Vote for GNU Parallel's community ads on
|
||
http://meta.unix.stackexchange.com/a/4356/2972
|
||
http://meta.askubuntu.com/a/16750/22307
|
||
http://meta.serverfault.com/a/9040/45704
|
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|
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* GNU Parallel was cited in: Halvade-RNA: Parallel variant calling
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from transcriptomic data using MapReduce
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||
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0174575
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* GNU Parallel was cited in: StrAuto: automation and parallelization
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of STRUCTURE analysis
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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1593-0
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* GNU Parallel was cited in: Trespassing the Boundaries: Labeling
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Temporal Bounds for Object Interactions in Egocentric Video
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||
https://128.84.21.199/pdf/1703.09026.pdf
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* GNU Parallel is used in: https://github.com/lucascbeyeler/zmbackup
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* Using GNU Parallel
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https://wiki.ncsa.illinois.edu/display/ROGER/Using+GNU+Parallel
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* Find and xargs and parallel
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http://helpful.knobs-dials.com/index.php/Find_and_xargs_and_parallel#Parallel
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|
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* Quick Introduction to GNU Parallel
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||
https://github.com/mlangill/microbiome_helper/wiki/Quick-Introduction-to-GNU-Parallel
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||
* Data science at the command line https://www.slideshare.net/sharatsc/data-science-at-the-command-line
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|
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* Bedtools笔记 http://www.jianshu.com/p/67b0665490ac
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|
||
* Bug fixes and man page updates.
|
||
|
||
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||
20170322
|
||
|
||
* --rpl can now take arguments by adding '(regexp)' in the replacement
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string.
|
||
|
||
* Vote for GNU Parallel's community ads on
|
||
http://meta.unix.stackexchange.com/a/4356/2972
|
||
http://meta.askubuntu.com/a/16750/22307
|
||
http://meta.serverfault.com/a/9040/45704
|
||
|
||
* GNU Parallel was cited in: shmlast: An improved implementation of
|
||
Conditional Reciprocal Best Hits with LAST and Python
|
||
https://joss.theoj.org/papers/3cde54de7dfbcada7c0fc04f569b36c7
|
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|
||
* GNU Parallel was cited in: Prediction of relativistic electron flux
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||
in the Earth’s outer radiation belt at geostationary orbit by
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adaptive methods
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https://link.springer.com/article/10.1134/S0016793217010108
|
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|
||
* GNU Parallel was cited in: Higher likelihood of multiple bit-flips
|
||
due to neutron-induced strikes on logic gates
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||
https://arxiv.org/pdf/1612.08239.pdf
|
||
|
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* GNU Parallel was cited in: A Monte Carlo Resampling Approach for the
|
||
Calculation of Hybrid Classical and Quantum Free Energies
|
||
http://pubs.acs.org/doi/pdfplus/10.1021/acs.jctc.6b00506
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|
||
* GNU Parallel was cited in: Learning string distance with smoothing
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||
for OCR spelling correction
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||
https://link.springer.com/article/10.1007/s11042-016-4185-5
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|
||
* GNU Parallel was cited in: The Breakdown of String Perturbation
|
||
Theory for Many External Particles
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||
https://arxiv.org/pdf/1611.08003.pdf
|
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|
||
* GNU Parallel was cited in: Operations Research Applications in
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||
Nuclear Energy
|
||
https://dspace.library.colostate.edu/bitstream/handle/11124/170687/Johnson_mines_0052E_11207.pdf?sequence=1&isAllowed=y
|
||
|
||
* GNU Parallel was cited in: Parallel Computing: GNU Parallel
|
||
http://www.blopig.com/blog/2017/02/parallel-computing-gnu-parallel/
|
||
|
||
* Stig Sandbeck Mathisen: Change All The Passwords (Again)
|
||
http://garf.us/2017/02/stig-sandbeck-mathisen-change-all-the-passwords-again/
|
||
|
||
* Trabalhando como Paralelismo no Bash usando o GNU Parallel
|
||
http://www.beyeler.com.br/2017/03/trabalhando-como-paralelismo-no-bash-usando-o-gnu-parallel/
|
||
|
||
* GNU parallel と SQL*Loader 組み合わせ実行例
|
||
https://blogs.oracle.com/LetTheSunShineIn/entry/gnu_parallel_%E3%81%A8_sql_loader
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20170222
|
||
|
||
* env_parallel now supports /bin/sh, ash, dash.
|
||
|
||
* --tee will pipe all data to all jobs. Used with --pipe/--pipepart
|
||
and :::. Small example: seq 3333 | parallel --pipe --tee --tag 'grep
|
||
{} | wc -l' ::: {0..9}
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||
|
||
* If --results {replstr} ends in /: save in dir. Otherwise save as
|
||
file. Example: parallel --results {} echo {} ::: a b c
|
||
|
||
* Vote for GNU Parallel's community ads on
|
||
http://meta.unix.stackexchange.com/a/4356/2972
|
||
http://meta.askubuntu.com/a/16750/22307
|
||
http://meta.serverfault.com/a/9040/45704
|
||
|
||
* GNU Parallel was cited in: Low-delay forwarding with multiple
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||
candidates for VANETs using multi-criteria decision making
|
||
http://ieeexplore.ieee.org/document/7835961/
|
||
|
||
* GNU Parallel was cited in: An Integrated Simulator and Dataset that
|
||
Combines Grasping and Vision for Deep Learning
|
||
https://arxiv.org/pdf/1702.02103.pdf
|
||
|
||
* GNU Parallel was cited in: A Bayesian model selection approach for
|
||
identifying differentially expressed transcripts from RNA sequencing
|
||
data http://onlinelibrary.wiley.com/doi/10.1111/rssc.12213/full
|
||
|
||
* GNU Parallel was cited in: The impact of copy number variation on
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||
gout, and the apple genome
|
||
https://ourarchive.otago.ac.nz/bitstream/handle/10523/7060/BoocockJames2016MSc.pdf?sequence=3
|
||
|
||
* GNU Parallel was cited in: Reaction rates for reaction-diffusion
|
||
kinetics on unstructured meshes
|
||
http://aip.scitation.org/doi/10.1063/1.4975167
|
||
|
||
* GNU Parallel was cited in: Modeling prediction error improves power
|
||
of transcriptome-wide association studies
|
||
http://biorxiv.org/content/biorxiv/early/2017/02/14/108316.full.pdf
|
||
|
||
* GNU Parallel was cited in: Proper experimental design requires
|
||
randomization/balancing of molecular ecology experiments
|
||
http://biorxiv.org/content/biorxiv/early/2017/02/17/109280.full.pdf
|
||
|
||
* GNU Parallel was cited in: Experiment-based thermal micromagnetic
|
||
simulations of the magnetization reversal for ns-range clocked
|
||
nanomagnetic logic
|
||
http://aip.scitation.org/doi/full/10.1063/1.4974021
|
||
|
||
* GNU Parallel was cited in: The University of Edinburgh’s systems
|
||
submission to the MT task at IWSLT
|
||
http://workshop2016.iwslt.org/downloads/IWSLT_2016_paper_27.pdf
|
||
|
||
* Fast-GBS uses GNU Parallel: https://bitbucket.org/jerlar73/fast-gbs
|
||
|
||
* Job: DevOps Engineer/Senior Systems Administrator in New York, New
|
||
York
|
||
http://rockefeller.jobs/new-york-ny/devops-engineersenior-systems-administrator/2DB3408EAC9E4617AD238550F31C7641/job/
|
||
|
||
* Training in GNU Parallel:
|
||
https://www.carc.unm.edu/education-outreach/workshops--training/
|
||
|
||
* Training in GNU Parallel:
|
||
http://www.hpc.lsu.edu/training/registration.php?topic=Parallel%20Serial%20Jobs%20Using%20GNU%20Parallel&date=February%2022,%202017&time=9:00%20AM%20-%2011:00%20AM&place=307%20Frey&deadline=2017-02-21%2016:30:00
|
||
|
||
* Batch Convert Images from PNG to JPEG
|
||
http://coreygoldberg.blogspot.dk/2017/02/batch-convert-images-from-png-to-jpeg.html
|
||
|
||
* Accelerating Oxford Nanopore Basecalling
|
||
http://fowlerlab.org/2017/01/26/accelerating-oxford-nanopore-basecalling/
|
||
|
||
* parallel и imagemagick в loop на bash
|
||
https://www.linux.org.ru/forum/development/13190247
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20170206alpha
|
||
|
||
* --tee introduced.
|
||
|
||
|
||
20170122
|
||
|
||
* sql now uses a temporary credentials file for MySQL to avoid
|
||
warning.
|
||
|
||
* --sqlmaster and --sqlworker have been reworked.
|
||
|
||
* --sqlworker only reads from the DBURL: any command and any arguments
|
||
are ignored.
|
||
|
||
* --sqlmaster +DBURL will append different commands to the DBURL and
|
||
not erase the table.
|
||
|
||
* If --results contain a replacement string, no tree structure with
|
||
args will be generated.
|
||
|
||
* --fg --tmux or --fg --tmuxpane will connect to the tmux.
|
||
|
||
* GNU Parallel was cited in: Fast, Automated Indoor Light Detection,
|
||
Classification, and Measurement
|
||
https://www2.eecs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-212.pdf
|
||
|
||
* GNU Parallel was cited in: Unbiased RNA Shotgun Metagenomics in
|
||
Social and Solitary Wild Bees Detects Associations with Eukaryote
|
||
Parasites and New Viruses
|
||
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0168456
|
||
|
||
* GNU Parallel was cited in: Almost Event-Rate Independent Monitoring
|
||
of Metric Temporal Logic
|
||
http://people.inf.ethz.ch/trayteld/papers/tacas17-aerial/aerial.pdf
|
||
|
||
* 使用GNU parallel命令并行预处理数据: https://blog.razrlele.com/p/1843
|
||
|
||
* GNU Parallel as a queuing system:
|
||
http://puntoblogspot.blogspot.com/2017/01/gnu-parallel-as-queuing-system.html
|
||
|
||
* AWS re:Invent 2016: Deep Dive on Amazon Elastic File System (STG202)
|
||
slide 45
|
||
http://www.slideshare.net/AmazonWebServices/aws-reinvent-2016-deep-dive-on-amazon-elastic-file-system-stg202
|
||
and https://youtu.be/PlTuJx4VnGw?t=30m16s
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20161222
|
||
|
||
* --results foo.csv will save output as a CSV-file. Can be directly
|
||
imported into R or LibreCalc.
|
||
|
||
* When using --pipepart a negative --block-size is not interpreted as
|
||
a block size but as the number of blocks each jobslot should have.
|
||
|
||
* --sqlmaster/--sqlandworker will append jobs to the DBURL if the
|
||
DBURL is prepended with +.
|
||
|
||
* GNU Parallel was cited in: A cloud-based workflow to quantify
|
||
transcript-expression levels in public cancer compendia
|
||
http://www.nature.com/articles/srep39259
|
||
|
||
* GNU Parallel was cited in: Determination of crystal structures of
|
||
proteins of unknown identity using a marathon molecular replacement
|
||
procedure: Structure of Stenotrophomonas maltophilia
|
||
phosphate-binding protein
|
||
https://www.researchgate.net/publication/308186413_Determination_of_crystal_structures_of_proteins_of_unknown_identity_using_a_marathon_molecular_replacement_procedure_Structure_of_Stenotrophomonas_maltophilia_phosphate-binding_protein
|
||
|
||
* GNU Parallel was cited in: Large-scale benchmarking reveals false
|
||
discoveries and count transformation sensitivity in 16S rRNA gene
|
||
amplicon data analysis methods used in microbiome studies
|
||
http://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-016-0208-8
|
||
|
||
* GNU Parallel was cited in: Decomposing Images into Layers via
|
||
RGB-space Geometry
|
||
https://cs.gmu.edu/~ygingold/singleimage/Decomposing%20Images%20into%20Layers%20via%20RGB-space%20Geometry%20(Tan%20et%20al%202016%20TOG)%20small.pdf
|
||
|
||
* Transient compute clustering with GNU Parallel and sshfs
|
||
https://gist.github.com/Brainiarc7/24c966c8a001061ee86cc4bc05826bf4
|
||
|
||
* 4 Ways to Batch Convert Your PNG to JPG and Vice-Versa
|
||
http://www.tecmint.com/linux-image-conversion-tools/
|
||
|
||
* All's Fair in Love and Distributed Storage
|
||
http://cohesity.com/blog/alls-fair-love-distributed-storage/
|
||
|
||
* How can I use GNU Parallel to run a lot of commands in parallel
|
||
https://www.msi.umn.edu/support/faq/how-can-i-use-gnu-parallel-run-lot-commands-parallel
|
||
|
||
* 정해영의 블로그 - JEONG Haeyoung's blog
|
||
http://blog.genoglobe.com/2016/11/gnu-parallel.html
|
||
|
||
* 在Linux下将PNG和JPG批量互转的四种方法
|
||
http://os.51cto.com/art/201612/524182.htm
|
||
|
||
* Running in parallel http://tomkimpson.com/howto/gnuparallel/
|
||
|
||
* Taco Bell Parallel Programming
|
||
https://giorgos.sealabs.net/taco-bell-parallel-programming.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20161122
|
||
|
||
* --record-env can now be used with env_parallel for bash, ksh, pdksh,
|
||
and zsh.
|
||
|
||
* GNU Parallel was cited in: An improved implementation of Conditional
|
||
Reciprocal Best Hits with LAST and Python
|
||
https://pypi.python.org/pypi/shmlast/1.0.3
|
||
|
||
* GNU Parallel was cited in: miRPathDB: a new dictionary on microRNAs
|
||
and target pathways
|
||
http://nar.oxfordjournals.org/content/early/2016/10/13/nar.gkw926.full
|
||
|
||
* GNU/Parallel – Run multiple commands simultaneously
|
||
https://vinusumi.wordpress.com/2016/11/08/gnuparallel-run-multiple-commands-simultaneously/
|
||
|
||
* Tutorial: Parallel web scraping with CasperJS and GNU Parallel
|
||
http://g-liu.com/blog/2016/10/tutorial-parallel-web-scraping-with-casperjs-and-gnu-parallel/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20161022
|
||
|
||
* First command no longer gets stdin as it causes unpredictable issues.
|
||
|
||
* GNU Parallel was cited in: Efficiently parallelized modeling of
|
||
tightly focused, large bandwidth laser pulses
|
||
https://arxiv.org/pdf/1609.08146v1.pdf
|
||
|
||
* How to crunch lots of geodata in parallel
|
||
http://blog.faraday.io/how-to-crunch-lots-of-geodata-in-parallel/
|
||
|
||
* GNU parallel is my new toaster
|
||
http://amedee.me/gnu-parallel-is-my-new-toaster/index.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20160922
|
||
|
||
* parcat - cat files or fifos in parallel
|
||
|
||
* GNU Parallel was cited in: Velocity: A Netflow Based Optimized
|
||
Geo-IP Lookup Tool
|
||
https://mospace.umsystem.edu/xmlui/bitstream/handle/10355/50842/Thesis_2016_Pakhare.pdf?sequence=1&isAllowed=y
|
||
|
||
* GNU Parallel was cited in: Viral deep sequencing needs an adaptive
|
||
approach: IRMA, the iterative refinement meta-assembler
|
||
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011931/
|
||
|
||
* Using GNU Parallel and ImageMagick for Conversions
|
||
https://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
|
||
|
||
* Training in GNU Parallel
|
||
http://www.cism.ucl.ac.be/Services/Formations/parcomp.pdf
|
||
|
||
* Chown Ceph OSD data directory using GNU Parallel
|
||
http://blog.widodh.nl/2016/08/chown-ceph-osd-data-directory-using-gnu-parallel/
|
||
|
||
* FastGBS uses GNU Parallel https://bitbucket.org/jerlar73/fastgbs
|
||
|
||
* dDocent: A guide to ddRAD sequencing
|
||
https://ddocent.wordpress.com/ddocent-pipeline-user-guide/
|
||
|
||
* SOFTWARE GNU Parallel
|
||
http://msi-riss.readthedocs.io/en/latest/software/gnu-parallel.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20160822
|
||
|
||
* --tmuxpane opens jobs in panes in tmux. Useful if you want to
|
||
monitor progress of less than 100 simultaneous jobs.
|
||
|
||
* --linebuffer now treats \r as line ending, too.
|
||
|
||
* Perl changes forces use of floats to be given with leading zero, so
|
||
0.1 and not .1
|
||
|
||
* --xapply renamed to --link.
|
||
|
||
* Support for pdksh will fade until someone packages it for Ubuntu 16.
|
||
|
||
* GNU Parallel was cited in: Exome sequencing of geographically
|
||
diverse barley landraces and wild relatives gives insights into
|
||
environmental adaptation
|
||
http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3612.html?WT.feed_name=subjects_genetics#references
|
||
|
||
* GNU Parallel was cited in: Vision-Enhanced Lidar Odometry and
|
||
Mapping https://www.ri.cmu.edu/pub_files/2016/8/DLL-thesis.pdf
|
||
|
||
* Easy parallelization with GNU parallel
|
||
http://mpharrigan.com/2016/08/02/parallel.html
|
||
|
||
* Facebook V: Predicting Check Ins, Winner's Interview: 2nd Place,
|
||
Markus Kliegl
|
||
http://blog.kaggle.com/2016/08/02/facebook-v-predicting-check-ins-winners-interview-2nd-place-markus-kliegl/
|
||
|
||
* Parallel import
|
||
http://www.manitou-mail.org/blog/2016/07/parallel-import/
|
||
|
||
* Large file batch processing using NodeJs and GNU Parallel
|
||
http://www.zacorndorff.com/2016/07/27/large-file-batch-processing-using-nodejs-and-gnu-parallel/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20160722
|
||
|
||
* env_parallel is now ready for wider testing. It is still beta
|
||
quality.
|
||
|
||
* env_parallel is heavily modified for all shells and testing has been
|
||
increased.
|
||
|
||
* Selectively choosing what to export using --env now works for
|
||
env_parallel (bash, csh, fish, ksh, pdksh, tcsh, zsh).
|
||
|
||
* --round-robin now gives more work to a job that processes faster
|
||
instead of same amount to all jobs.
|
||
|
||
* --pipepart works on block devices on GNU/Linux.
|
||
|
||
* GNU Parallel was cited in: HybPiper: Extracting Coding Sequence and
|
||
Introns for Phylogenetics from High-Throughput Sequencing Reads
|
||
Using Target Enrichment
|
||
http://www.bioone.org/doi/full/10.3732/apps.1600016
|
||
|
||
* GNU Parallel was cited in: StrAuto - Automation and Parallelization
|
||
of STRUCTURE Analysis
|
||
http://www.crypticlineage.net/download/strauto/strauto_doc.pdf
|
||
|
||
* GNU Parallel was cited in: Tools and techniques for computational
|
||
reproducibility
|
||
http://gigascience.biomedcentral.com/articles/10.1186/s13742-016-0135-4
|
||
|
||
* GNU Parallel was cited in: FlashPCA: fast sparse canonical
|
||
correlation analysis of genomic data
|
||
http://biorxiv.org/content/biorxiv/suppl/2016/04/06/047217.DC1/047217-1.pdf
|
||
|
||
* GNU Parallel was cited in: Math Indexer and Searcher under the Hood:
|
||
Fine-tuning Query Expansion and Unification Strategies
|
||
http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings12/pdf/ntcir/MathIR/05-NTCIR12-MathIR-RuzickaM.pdf
|
||
|
||
* GNU Parallel was cited in: The Evolution and Fate of
|
||
Super-Chandrasekhar Mass White Dwarf Merger Remnants
|
||
http://arxiv.org/pdf/1606.02300.pdf
|
||
|
||
* GNU Parallel was cited in: Evaluation of Coastal Scatterometer
|
||
Products
|
||
https://mdc.coaps.fsu.edu/scatterometry/meeting/docs/2016/Thu_AM/coastal-poster.pdf
|
||
|
||
* GNU Parallel was used in: https://github.com/splitice/bulkdnsblcheck
|
||
|
||
* The iconv slurp misfeature
|
||
http://www.openfusion.net/linux/iconv_slurp_misfeature
|
||
|
||
* แบบว่า CPU เหลือ https://veer66.wordpress.com/2016/06/15/gnu-parallel/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20160622
|
||
|
||
* $PATH can now be exported using --env PATH. Useful if GNU Parallel
|
||
is not in your path on remote machines.
|
||
|
||
* If --block is left out, --pipepart will use a block size that will
|
||
result in 10 jobs per jobslot.
|
||
|
||
* The cookie from 2016-01-04 was won by Morgan Rodgers on the
|
||
2016-06-06 after 5 months.
|
||
|
||
* Vote for GNU Parallel's community ad on
|
||
https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
|
||
|
||
* GNU Parallel was cited in: Genotypic Resistance Tests Sequences
|
||
Reveal the Role of Marginalized Populations in HIV-1 Transmission in
|
||
Switzerland http://www.nature.com/articles/srep27580
|
||
|
||
* GNU Parallel was cited in: A Deep-Learning Approach for Operation of
|
||
an Automated Realtime Flare Forecast
|
||
https://arxiv.org/pdf/1606.01587.pdf
|
||
|
||
* Unix parallel: Populating all the USB sticks
|
||
http://www.markhneedham.com/blog/2016/06/01/unix-parallel-populating-all-the-usb-sticks/
|
||
|
||
* GNU Parallel is a fantastic utility https://www.dray.be/parallel/
|
||
|
||
* Combining a large number of VCF files
|
||
https://gtamazian.com/2016/06/16/combining-a-large-number-of-vcf-files/
|
||
|
||
* Useful Scraping Techniques
|
||
http://blog.apps.npr.org/2016/06/17/scraping-tips.html
|
||
|
||
* Tools of the trade
|
||
http://onox.com.br/2015/05/tools-of-the-trade/#more-198
|
||
|
||
* Armslist scraper https://github.com/nprapps/armslist-scraper/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20160522
|
||
|
||
* niceload --net pauses the program if the internet connection is
|
||
overloaded.
|
||
|
||
* Vote for GNU Parallel's community ad on
|
||
https://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
|
||
|
||
* Updated speed comparison between versions
|
||
https://www.gnu.org/software/parallel/process-time-j2-1700MHz-3000-1000.pdf
|
||
|
||
* GNU Parallel was cited in: Improving computation efficiency by
|
||
parallel programming
|
||
http://www.irbis-nbuv.gov.ua/cgi-bin/irbis_nbuv/cgiirbis_64.exe?C21COM=2&I21DBN=UJRN&P21DBN=UJRN&IMAGE_FILE_DOWNLOAD=1&Image_file_name=PDF/ape_2013_3_44.pdf
|
||
|
||
* GNU Parallel was cited in: A supernova feedback implementation for
|
||
the astrophysical simulation software Arepo
|
||
https://arxiv.org/abs/1604.06071
|
||
|
||
* GNU Parallel was cited in: Lorenz-Mie theory for 2D scattering and
|
||
resonance calculations https://arxiv.org/pdf/1505.07691v2.pdf
|
||
|
||
* GNU Parallel was cited in: Host-pathogen co-evolution and the
|
||
emergence of broadly neutralizing antibodies in chronic infections
|
||
https://arxiv.org/abs/1512.06296
|
||
|
||
* GNU Parallel was cited in: Pacific People, Metabolic Disease and
|
||
Evolutionary Processes: a mitochondrial DNA study
|
||
https://otago.ourarchive.ac.nz/handle/10523/6340
|
||
|
||
* GNU Parallel was cited in: The effect of domain modeling on
|
||
efficiency of planning: Lessons from the Nomystery domain
|
||
http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=7407131
|
||
|
||
* GNU Parallel was cited in: Oops, my tests broke the build: An
|
||
analysis of Travis CI builds with GitHub
|
||
https://peerj.com/preprints/1984/
|
||
|
||
* GNU Parallel was cited in: Drosophila Muller F Elements Maintain a
|
||
Distinct Set of Genomic Properties Over 40 Million Years of
|
||
Evolution http://www.g3journal.org/content/5/5/719.full.pdf+html
|
||
|
||
* GNU Parallel was cited in: An Empirical Comparison of Neural
|
||
Architectures for Reinforcement Learning in Partially Observable
|
||
Environments
|
||
http://biorxiv.org/content/biorxiv/early/2016/03/24/022707.full.pdf
|
||
|
||
* GNU Parallel was cited in: PleaseTM: Enabling Transaction Conflict
|
||
Management in Requester-wins Hardware Transactional Memory
|
||
http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7446072
|
||
|
||
* GNU Parallel was cited in: EASE-MM: Sequence-Based Prediction of
|
||
Mutation-Induced Stability Changes with Feature-Based Multiple
|
||
Models
|
||
http://www.sciencedirect.com/science/article/pii/S0022283616000310
|
||
|
||
* GNU Parallel was cited in: A new orthology assessment method for
|
||
phylogenomic data: Unrooted Phylogenetic Orthology
|
||
http://mbe.oxfordjournals.org/content/early/2016/04/06/molbev.msw069.short
|
||
https://github.com/ballesterus/UPhO
|
||
|
||
* GNU Parallel was cited in: Distinctive Interest Point Selection for
|
||
Efficient Near-duplicate Image Retrieval
|
||
http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7459172
|
||
|
||
* GNU Parallel was cited in: The Evolution of C Programming Practices:
|
||
A Study of the Unix Operating System 1973–2015
|
||
https://dl.acm.org/citation.cfm?id=2884799 (It has the cutest
|
||
thumbnail graphs I have ever seen scattered all over the text)
|
||
|
||
* GNU Parallel was cited in: Data processing pipeline for serial
|
||
femtosecond crystallography at SACLA
|
||
http://journals.iucr.org/j/issues/2016/03/00/zw5001/index.html
|
||
|
||
* GNU Parallel was cited in: Reconstruction of Fine-Scale Auroral
|
||
Dynamics http://arxiv.org/pdf/1512.01460.pdf
|
||
|
||
* GNU Parallel was cited in: Genomic legacy of the African cheetah,
|
||
Acinonyx jubatus
|
||
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676127/pdf/13059_2015_Article_837.pdf
|
||
|
||
* GNU Parallel was cited in: Don’t Forget to Lock the Back Door! A
|
||
Characterization of IPv6 Network Security Policy
|
||
http://benign-research-probe2.eecs.umich.edu/ndss16_ipv6_final.pdf
|
||
|
||
* GNU Parallel was cited in: Comprehensive Annotation of the
|
||
Parastagonospora nodorum Reference Genome Using Next-Generation
|
||
Genomics, Transcriptomics and Proteogenomics
|
||
http://journals.plos.org/plosone/article/asset?id=10.1371%2Fjournal.pone.0147221.PDF
|
||
|
||
* GNU Parallel was cited in: How attention influences perceptual
|
||
decision making: Single-trial EEG correlates of drift-diffusion
|
||
model parameters http://www.cidlab.com/prints/nunez2016attention.pdf
|
||
|
||
* GNU Parallel was cited in: Telomere And Proximal Sequence Analysis
|
||
Using High-Throughput Sequencing Reads
|
||
http://repository.upenn.edu/edissertations/1460/
|
||
|
||
* GNU Parallel was cited in: AT-GIS: Highly Parallel Spatial Query
|
||
Processing with Associative Transducers
|
||
http://lsds.doc.ic.ac.uk/sites/default/files/ATGIS-SIGMOD16.pdf
|
||
|
||
* GNU Parallel was cited in: PVAIR: Partial Variable Assignment
|
||
InterpolatoR http://verify.inf.usi.ch/sites/default/files/main-2.pdf
|
||
|
||
* GNU Parallel was cited in: Comparative Cladistics: Fossils,
|
||
Morphological Data Partitions and Lost Branches in the Fossil Tree
|
||
of Life http://opus.bath.ac.uk/43955/
|
||
|
||
* GNU Parallel was cited in: Shannon: An Information-Optimal de
|
||
NovoRNA-Seq Assembler
|
||
http://biorxiv.org/content/biorxiv/early/2016/02/09/039230.full.pdf
|
||
|
||
* GNU Parallel was cited in: Adaptive Measure-Theoretic Parameter
|
||
Estimation for Coastal Ocean Modeling
|
||
https://repositories.lib.utexas.edu/handle/2152/32435
|
||
|
||
* GNU Parallel was cited in: Computational Design of DNA-Binding
|
||
Proteins
|
||
http://link.springer.com/protocol/10.1007/978-1-4939-3569-7_16
|
||
|
||
* GNU Parallel was cited in: Reference genotype and exome data from an
|
||
Australian Aboriginal population for health-based research
|
||
http://www.nature.com/articles/sdata201623
|
||
|
||
* GNU Parallel was cited in: Do aye-ayes echolocate?
|
||
http://biorxiv.org/content/biorxiv/early/2016/04/11/048165.full.pdf
|
||
|
||
* GNU Parallel was cited in: Functional enrichments of disease
|
||
variants across thousands of independent loci in eight diseases
|
||
http://biorxiv.org/content/biorxiv/early/2016/04/11/048066.full.pdf
|
||
|
||
* GNU Parallel was cited in: From genomes to phenotypes: Traitar, the
|
||
microbial trait analyzer
|
||
http://biorxiv.org/content/biorxiv/early/2016/03/12/043315.full.pdf
|
||
|
||
* GNU Parallel was mentioned in: Fast Playback Framework for Analysis
|
||
of Ground-Based Doppler Radar Observations Using MapReduce
|
||
Technology
|
||
http://journals.ametsoc.org/doi/pdf/10.1175/JTECH-D-15-0118.1
|
||
|
||
* NCBI blast tutorial
|
||
https://github.com/enormandeau/ncbi_blast_tutorial
|
||
|
||
* Distributed Preservation Made Simple
|
||
https://blog.archive.org/2016/02/26/distributed-preservation-made-simple/
|
||
|
||
* Parallel Jobs in Luigi http://rjbaxley.com/posts/2016/03/13/parallel_jobs_in_luigi.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20160422
|
||
|
||
* :::+ and ::::+ work like ::: and :::: but links this input source to
|
||
the previous input source in a --xapply fashion. Contrary to
|
||
--xapply values do not wrap: The shortest input source determines
|
||
the length.
|
||
|
||
* --line-buffer --keep-order now outputs continously from the oldest
|
||
job still running. This is more what you would expect than the
|
||
earlier behaviour where --keep-order had no effect with
|
||
--line-buffer.
|
||
|
||
* env_parallel supports tcsh, csh, pdksh. In fish it now supports
|
||
arrays. In csh/tcsh it now supports variables, aliases, and arrays
|
||
with no special chars. In pdksh it supports aliases, functions,
|
||
variables, and arrays.
|
||
|
||
* Function exporting on Mac OS X works around old Bash version.
|
||
|
||
* Better CPU detection on OpenIndiana.
|
||
|
||
* GNU Parallel was cited in: Automatic Methods for Assisted
|
||
Recruitment
|
||
https://www.researchgate.net/publication/297738658_Automatic_Methods_for_Assisted_Recruitment
|
||
|
||
* GNU Parallel was cited in: Reinterpretation of ATLAS 8 TeV searches
|
||
for Natural SUSY with a R-Sneutrino LSP
|
||
http://arxiv.org/pdf/1603.06130.pdf
|
||
|
||
* GNU Parallel was cited in: An Operational Radiometric Landsat
|
||
Preprocessing Framework for Large-Area Time Series Applications
|
||
https://www.uni-trier.de/fileadmin/fb6/prof/FER/Publikationen/frantz_et_al_ieee-tgrs-2016-post-print.pdf
|
||
|
||
* A basic demo of how GNU Parallel can speed up execution of commands
|
||
https://www.youtube.com/watch?v=kl8LO2jcvMc
|
||
|
||
* qbatch uses GNU Parallel: https://pypi.python.org/pypi/qbatch/1.0rc2
|
||
|
||
* FaceCrop uses GNU Parallel: https://github.com/EderSantana/FaceCrop
|
||
|
||
* Parallel Processing with Catmandu
|
||
https://librecatproject.wordpress.com/2016/04/20/parallel-processing-with-catmandu/
|
||
|
||
* GNU parallel 應用範例
|
||
http://staypython.blogspot.dk/2016/04/gnu-parallel.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20160322
|
||
|
||
* env_parallel is a function that exports the environment (functions,
|
||
aliases, variables, and arrays) to GNU Parallel. Run 'man
|
||
env_parallel' for details.
|
||
|
||
* niceload --prg now searches for substrings if no process with the
|
||
name is found.
|
||
|
||
* GNU Parallel was cited in: Random Forest DBSCAN for USPTO Inventor
|
||
Name Disambiguation http://arxiv.org/pdf/1602.01792.pdf
|
||
|
||
* GNU Parallel was mentioned (with wrong citation) in: Dual Level
|
||
Parallel Computations for LargeScale High-Fidelity Database to
|
||
Design Aerospace Vehicles
|
||
http://www.nas.nasa.gov/assets/pdf/papers/Guruswamy_2013_DualLevelParallelComputations.pdf
|
||
|
||
* Using ‘Parallel’ in Unix
|
||
https://shearnrylan.wordpress.com/2016/02/22/using-parallel-in-unix/
|
||
|
||
* JPEG Squish uses (and co-distributes) GNU Parallel:
|
||
http://dantidswell.co.uk/jpeg-squish/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20160222
|
||
|
||
* Vote for new community on Superuser, Ask Ubuntu, Unix&Linux
|
||
http://meta.superuser.com/questions/11127/community-promotion-ads-2016/11225#11225
|
||
http://meta.askubuntu.com/questions/14925/community-promotion-ads-2016/15046#15046
|
||
http://meta.unix.stackexchange.com/questions/3854/community-promotion-ads-2016/3893#3893
|
||
|
||
* Daily Quick Tip: parallel
|
||
https://medium.com/@jacaetevha/daily-quick-tip-parallel-8772435f6582
|
||
|
||
* Downloading a list of URLs
|
||
http://blog.gypsydave5.com/2016/02/04/xargs-and-curl/
|
||
|
||
* Using GNU Parallel and ImageMagick for Conversions
|
||
http://blog.fractalcomic.com/tutorials/using-gnu-parallel-and-imagemagick-for-conversions/
|
||
|
||
* Running bash commands in parallel
|
||
http://linuxcommando.blogspot.dk/2016/01/running-bash-commands-in-parallel.html
|
||
|
||
* parallel processing in PDAL
|
||
https://smathermather.wordpress.com/2016/01/28/parallel-processing-in-pdal/
|
||
|
||
* A Million Text Files And A Single Laptop
|
||
http://randyzwitch.com/gnu-parallel-medium-data/
|
||
|
||
* 「今日から使い切る」ための GNU Parallelによる並列処理入門
|
||
http://www.slideshare.net/koji_matsuda/gnu-parallel
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20160122
|
||
|
||
* --sql DBURL uses DBURL as storage for jobs and output. It does not
|
||
run any jobs so it requires at least one --sqlworker. DBURL must
|
||
point to a table.
|
||
|
||
* --sqlworker DBURL gets jobs from DBURL and stores the result back to
|
||
DBURL.
|
||
|
||
* --sqlandworker is a shorthand for --sql and --sqlworker.
|
||
|
||
* --sqlworker requires the output of a single job to fit in memory.
|
||
|
||
* --results now also saves a file called 'seq' containing the sequence
|
||
number.
|
||
|
||
* If $PARALLEL_ENV is a file, then that file will be read into
|
||
$PARALLEL_ENV.
|
||
|
||
* man parallel_tutorial has been given an overhaul.
|
||
|
||
* --workdir now accepts replacementstrings.
|
||
|
||
* GNU Parallel was cited in: Possum - A Framework for
|
||
Three-Dimensional Reconstruction of Brain Images from Serial
|
||
Sections http://link.springer.com/article/10.1007/s12021-015-9286-1
|
||
|
||
* GNU Parallel was cited in: A Genetic Algorithm for the selection of
|
||
structural MRI features for classification of Mild Cognitive
|
||
Impairment and Alzheimer's Disease
|
||
http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=7359909&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7359909
|
||
|
||
* GNU Parallel was cited in: The Effect of Domain Modeling on
|
||
Performance of Planning Algorithms
|
||
http://isaim2016.cs.virginia.edu/papers/ISAIM2016_Bartak_Vodrazka.pdf
|
||
|
||
* Plotting time tables for jobs run by GNU Parallel
|
||
https://github.com/ziotom78/plot_joblog
|
||
|
||
* GNU Parallel was used in: Mission Impossible: you have 1 minute to
|
||
analyze the Ebola Genome https://www.biostars.org/p/119397
|
||
|
||
* GNU Parallel is used in LAST: http://last.cbrc.jp/
|
||
|
||
* Distributed Log Search Using GNU Parallel
|
||
http://codehate.com/blog/2015/12/01/distributed-log-search-using-gnu-parallel/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20151222
|
||
|
||
* --transfer is now an alias for --transferfile {}.
|
||
|
||
* --transferfile works like --transfer, but takes an argument like
|
||
--return. This makes it possible to combine transferring files
|
||
with multiple input sources: parallel -S server --tf {1} wc {2}
|
||
{1} ::: * ::: -l -w -c
|
||
|
||
* total_jobs() can now be used in {= =}: parallel echo job {#} of '{=
|
||
$_=total_jobs() =}' ::: {1..50}
|
||
|
||
* GNU Parallel was cited in: Evolution and Learning in Heterogeneous
|
||
Environments
|
||
http://research.gold.ac.uk/15078/1/COM_thesis_JonesD_2015.pdf
|
||
|
||
* GNU Parallel was cited in: Achieving Consistent Doppler Measurements
|
||
from SDO/HMI Vector Field Inversions
|
||
http://arxiv.org/pdf/1511.06500.pdf
|
||
|
||
* Flo uses GNU Parallel: https://github.com/wurmlab/flo
|
||
|
||
* 使用 GNU parallel 來平行運算
|
||
http://mutolisp.logdown.com/posts/316959-using-gnu-parallel-to-parallel-computing
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20151122
|
||
|
||
* GNU Parallel packaged for CERN CentOS:
|
||
http://linuxsoft.cern.ch/cern/centos/7/cern/x86_64/repoview/parallel.html
|
||
|
||
* GNU Parallel was cited in: The Outer Solar System Origins Survey:
|
||
I. Design and First-Quarter Discoveries
|
||
http://arxiv.org/pdf/1511.02895.pdf
|
||
|
||
* GNU Parallel was cited in: Contrasting genetic architectures of
|
||
schizophrenia and other complex diseases using fast
|
||
variance-components analysis
|
||
http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3431.html
|
||
|
||
* GNU Parallel was cited in: Named-Entity Chunking for Norwegian Text
|
||
using Support Vector Machines
|
||
http://ojs.bibsys.no/index.php/NIK/article/viewFile/248/211
|
||
|
||
* GNU Parallel was cited in: Multiscale Estimation of Binding Kinetics
|
||
Using Brownian Dynamics, Molecular Dynamics and Milestoning
|
||
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004381#pcbi.1004381.ref072
|
||
|
||
* GNU Parallel was cited in: A Detailed Characterization of Errors in
|
||
Logic Circuits due to Single-Event Transients
|
||
http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=7302348&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D7302348
|
||
|
||
* GNU Parallel was cited in: Arabic Speaker Emotion Classification
|
||
Using Rhythm Metrics and Neural Networks
|
||
http://www.eurasip.org/Proceedings/Eusipco/Eusipco2015/papers/1570104855.pdf
|
||
|
||
* GNU Parallel was cited in: Stride Search: a general algorithm for
|
||
storm detection in high resolution climate data
|
||
http://www.geosci-model-dev-discuss.net/8/7727/2015/gmdd-8-7727-2015.pdf
|
||
|
||
* GNU Parallel was cited in: Decomposing Digital Paintings into Layers
|
||
via RGB-space Geometry http://arxiv.org/pdf/1509.03335.pdf
|
||
|
||
* GNU Parallel was cited in: Structure and evolutionary history of a
|
||
large family of NLR proteins in the zebrafish
|
||
http://www.biorxiv.org/content/biorxiv/early/2015/09/18/027151.full.pdf
|
||
|
||
* GNU Parallel was cited in: Evolution of movement strategies under
|
||
competitive interactions
|
||
http://digital.csic.es/bitstream/10261/115973/1/evolution_movement_strategies_Kiziridis.pdf
|
||
|
||
* Automating large numbers of tasks
|
||
https://rcc.uchicago.edu/docs/tutorials/kicp-tutorials/running-jobs.html
|
||
|
||
* Max out your IOPs with GNU Parallel
|
||
http://blog.bitratchet.com/2015/11/11/max-out-your-iops-with-gnu-parallel/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20151022
|
||
|
||
* --plus makes it possible to use {##} as a shorthand for
|
||
{= $_=$Global::JobQueue->total_jobs() =} which gives the the number
|
||
of jobs to run in total.
|
||
|
||
* {= $_=$Global::JobQueue->total_jobs() =} is incompatible with -X,
|
||
-m, and --xargs.
|
||
|
||
* GNU Parallel is now mostly compatible with lsh
|
||
(http://www.lysator.liu.se/~nisse/lsh/) and somewhat compatible with
|
||
autossh (http://www.harding.motd.ca/autossh/).
|
||
|
||
* --workdir ... now also works when run locally.
|
||
|
||
* GNU Parallel was cited in: There is no (75, 32, 10, 16) strongly
|
||
regular graph http://arxiv.org/pdf/1509.05933.pdf
|
||
|
||
* GNU Parallel was cited in: Roary: rapid large-scale prokaryote pan
|
||
genome analysis
|
||
http://bioinformatics.oxfordjournals.org/content/early/2015/08/05/bioinformatics.btv421.full.pdf+html
|
||
|
||
* GNU Parallel is used in TraitAR:
|
||
https://testpypi.python.org/pypi/traitar/0.1.4
|
||
|
||
* A parallel and fast way to download multiple files
|
||
http://onetipperday.blogspot.com/2015/10/a-parallel-and-fast-way-to-download.html
|
||
|
||
* Usar GNU Parallel para aumentar el rendimiento de tus scripts
|
||
http://adrianarroyocalle.github.io/blog/2015/10/20/usar-gnu-parallel/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20150922
|
||
|
||
* GNU Parallel was cited in: Flexible Modeling of Epidemics with an
|
||
Empirical Bayes Framework
|
||
http://journals.plos.org/ploscompbiol/article?id=10.1371%2Fjournal.pcbi.1004382
|
||
|
||
* GNU Parallel was cited in: BL1: 2D Potts Model with a Twist
|
||
https://sucs.swan.ac.uk/~rjames93/Dissertation.pdf
|
||
|
||
* GNU Parallel was cited in: A Scalable Parallel Implementation of
|
||
Evolutionary Algorithms for Multi-Objective Optimization on GPUs
|
||
http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7257074
|
||
|
||
* GNU Parallel was cited in: How Can We Measure the Similarity Between
|
||
Résumés of Selected Candidates for a Job?
|
||
https://www.researchgate.net/publication/275954089_How_can_we_measure_the_similarity_between_rsums_of_selected_candidates_for_a_job
|
||
|
||
* GNU Parallel was cited in: Interplay of cell dynamics and epithelial
|
||
tension during morphogenesis of the Drosophila pupal wing
|
||
http://www.researchgate.net/profile/Raphael_Etournay/publication/279061859_Interplay_of_cell_dynamics_and_epithelial_tension_during_morphogenesis_of_the_Drosophila_pupal_wing/links/558a95ad08aeae8413bcceea.pdf
|
||
|
||
* Third-party selling GNU Parallel T-shirts
|
||
http://www.aliexpress.com/item/2015F-BSO-GNU-LOGO-GNU-PARALLEL-men-s-shirt-sleeve-visual-illusion-error/32464827966.html
|
||
|
||
* Joys of gnu parallel
|
||
http://scottolesen.com/index.php/2015/08/26/joys-of-gnu-parallel/
|
||
|
||
* Crop and resize images with bash and ImageMagick
|
||
https://www.simonholywell.com/post/2015/08/image-resize-crop-bash-imagemagick/
|
||
|
||
* Three Ways to Script Processes in Parallel
|
||
http://www.codeword.xyz/2015/09/02/three-ways-to-script-processes-in-parallel/
|
||
|
||
* What It Looks Like to Process 3.5 Million Books
|
||
http://blog.gdeltproject.org/what-it-looks-like-to-process-3-5-million-books/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20150822
|
||
|
||
* If $job->skip() is called in {= =} the job will not be run.
|
||
|
||
* @arg can now be used in {= =}: parallel echo '{= $arg[2] < 5 and
|
||
$_="j" =}' ::: 1 2 3 ::: 4 5 6
|
||
|
||
* Version of GNU Parallel that uses PostgreSQL as backend
|
||
https://github.com/stephen-fralich/parallel-sql/
|
||
|
||
* SpeedSeq: ultra-fast personal genome analysis and interpretation
|
||
http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3505.html
|
||
|
||
* GNU Parallel is used in elPrep: https://github.com/ExaScience/elprep
|
||
|
||
* Who actually reads the code?
|
||
http://www.fsf.org/blogs/community/who-actually-reads-the-code
|
||
|
||
* Introduction to GNU Parallel
|
||
http://erictleung.com/2015/08/06/intro-to-gnu-parallel/
|
||
|
||
* ¿Alguien se lee el código?
|
||
http://www.taringa.net/post/linux/18854759/Alguien-se-lee-el-codigo.html
|
||
|
||
* ¿Quién se lee el código fuente?
|
||
https://victorhckinthefreeworld.wordpress.com/2015/08/12/quien-se-lee-el-codigo-fuente/
|
||
|
||
* Distribution des traitements avec GNU Parallel
|
||
http://blog.inovia-conseil.fr/?p=226#4
|
||
|
||
* Эксперимент по проверке, читают ли код открытых проектов
|
||
http://www.opennet.ru/opennews/art.shtml?num=42718
|
||
|
||
* 多核心主機搭配 GNU parallel
|
||
http://blog.zeroplex.tw/2015/08/gnu-parallel.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20150722
|
||
|
||
* If a record fits in a block, --block only reads upto the size of
|
||
--block. If not: --block reads a full --block more.
|
||
|
||
* Due to widely spread distributions still using --tollef even after a
|
||
year of being retired following a year of being obsolete, --tollef
|
||
now gives an error unless used with --gnu.
|
||
|
||
* --nice now uses a perl wrapper instead of the nice command.
|
||
|
||
* Cookie 2013-08-18 was won by Mark Maimone, 1 year and 11 months
|
||
after release.
|
||
|
||
* A parser for GNU Parallel --joblog files:
|
||
https://github.com/harryjubb/joblog
|
||
|
||
* GNU Parallel was cited in: Dynamical formation & scattering of
|
||
hierarchical triples: Cross sections, Kozai-Lidov oscillations, and
|
||
collisions http://arxiv.org/pdf/1507.03593.pdf
|
||
|
||
* GNU Parallel was cited in: A Fast Compiler for NetKAT
|
||
http://arxiv.org/pdf/1506.06378.pdf
|
||
|
||
* GNU Parallel was cited in: Decomposing Time-Lapse Paintings into
|
||
Layers
|
||
http://cs.gmu.edu/~ygingold/timemap/Decomposing%20Time-Lapse%20Paintings%20into%20Layers%20(Tan%20et%20al%202015%20SIGGRAPH)%20600dpi.pdf
|
||
|
||
* GNU Parallel was used in: Somatic mutation calling from the matched
|
||
tumor-normal exome-sequencing
|
||
http://fafner.meb.ki.se/biostatwiki/somac/
|
||
|
||
* Parallel Processing from the Command Line
|
||
https://www.perpetual-beta.org/weblog/parallel-processing-from-the-command-line.html
|
||
|
||
* Using GNU Parallel to speed up network operations
|
||
http://vielmetti.typepad.com/vacuum/2015/06/using-gnu-parallel-to-speed-up-network-operations.html
|
||
|
||
* Crawl faster with "parallel" - but how fast?
|
||
http://andreas-wpv.blogspot.com/2015/07/crawl-faster-with-parallel-but-how-fast.html
|
||
|
||
* Simultaneously benchmark many URLs with ApacheBench and GNU parallel
|
||
https://www.simonholywell.com/post/2015/06/parallel-benchmark-many-urls-with-apachebench/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20150622
|
||
|
||
* --halt has been rewritten completely. You can now combine
|
||
percentages with success or fail. See the man page.
|
||
|
||
* Exit values 102..254 have been removed. 101 means more than 100 jobs
|
||
failed.
|
||
|
||
* Killing through --timeout, --memfree, or --halt is now done as a
|
||
process group.
|
||
|
||
* --termseq determines which signals are sent when a job is killed.
|
||
|
||
* An empty argument would previously cause no string to be
|
||
inserted. This is now changed to '' being inserted, thus prepending
|
||
a space to the output of: parallel echo {} b ::: ''
|
||
|
||
* $PARALLEL_ENV can now be set to an environment prepending the
|
||
command. Used in env_parallel as mentioned in the manpage.
|
||
|
||
* --retry-failed will retry all failed jobs in a joblog. It will
|
||
ignore any command given.
|
||
|
||
* --ssh and $PARALLEL_SSH can be used to set the command used for
|
||
ssh. The command is assumed to behave the same way as ssh.
|
||
|
||
* --fifo now works in csh, too.
|
||
|
||
* Q(...) can be used in {= =} to shell quote a string.
|
||
|
||
* GNU Parallel was cited in: DockBench: An Integrated Informatic
|
||
Platform Bridging the Gap between the Robust Validation of Docking
|
||
Protocols and Virtual Screening Simulations
|
||
http://www.mdpi.com/1420-3049/20/6/9977
|
||
|
||
* GNU Parallel was cited in: Swedes Online: You Are More Tracked Than
|
||
You Think
|
||
http://www.diva-portal.org/smash/get/diva2:807623/FULLTEXT01.pdf
|
||
|
||
* GNU Parallel was cited in: Tutorial: Lorenz-Mie theory for 2D
|
||
scattering and resonance calculations
|
||
http://arxiv.org/pdf/1505.07691.pdf
|
||
|
||
* GNU Parallel was cited in: A quantitative assessment of the Hadoop
|
||
framework for analyzing massively parallel DNA sequencing data
|
||
http://link.springer.com/article/10.1186/s13742-015-0058-5
|
||
|
||
* GNU Parallel was cited in: A composite genome approach to identify
|
||
phylogenetically informative data from next-generation sequencing
|
||
http://www.biomedcentral.com/content/pdf/s12859-015-0632-y.pdf
|
||
|
||
* GNU Parallel is used in: taxator-tk
|
||
http://algbio.cs.uni-duesseldorf.de/webapps/wa-download/
|
||
|
||
* GNU Parallel is used in: https://github.com/d2207197/local-mapreduce
|
||
|
||
* GNU Parallel is used in: wiki-edit-news https://github.com/albert-decatur/wiki-edit-news
|
||
|
||
* GNU Parallel is used in: A Fingerprint Identification System
|
||
https://curve.carleton.ca/system/files/theses/28733.pdf
|
||
|
||
* Job ad asking for GNU Parallel experience:
|
||
http://searchjobs.intel.com/gdansk-pol/software-validation-engineer/63A06826DAF24797AB414DC146201C2E/job/
|
||
|
||
* Using BLAT http://wangzhengyuan.blogspot.dk/2015/06/using-blat.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20150522
|
||
|
||
* Security: The security issue for --sshlogin + --fifo/--cat has been
|
||
fixed. Thereby all issues with
|
||
http://lists.gnu.org/archive/html/parallel/2015-04/msg00045.html
|
||
have been fixed.
|
||
|
||
* Security: After further security analysis the issue fixed in
|
||
20150422 also fixed the problem for --tmux.
|
||
|
||
* GNU Parallel was cited in: CIDER: a pipeline for detecting waves of
|
||
coordinated transcriptional regulation in gene expression
|
||
time-course data
|
||
http://biorxiv.org/content/biorxiv/early/2015/03/17/012518.full.pdf
|
||
|
||
* GNU Parallel was cited in: Building Genomic Analysis Pipelines in a
|
||
Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics,
|
||
Metagenomics and RNA-seq
|
||
http://biorxiv.org/content/biorxiv/early/2015/05/05/018085.full.pdf
|
||
|
||
* GNU Parallel was cited in: Sequencing the cap-snatching repertoire
|
||
of H1N1 influenza provides insight into the mechanism of viral
|
||
transcription initiation
|
||
http://nar.oxfordjournals.org/content/early/2015/04/20/nar.gkv333.full.pdf
|
||
|
||
* GNU Parallel was cited in: Genome assembly using Nanopore-guided
|
||
long and error-free DNA reads
|
||
http://www.biomedcentral.com/content/pdf/s12864-015-1519-z.pdf
|
||
|
||
* GNU Parallel was used (unfortunately with wrong citation) in:
|
||
Comparing the CarbonTracker and TM5-4DVar data assimilation systems
|
||
for CO2 surface flux inversions
|
||
http://www.atmos-chem-phys-discuss.net/15/8883/2015/acpd-15-8883-2015-discussion.html
|
||
|
||
* GNU Parallel was used in: Gene Set Omic Analysis (GSOA) method
|
||
https://bitbucket.org/srp33/gsoa
|
||
|
||
* A Quick and Neat :) Orchestrator using GNU Parallel
|
||
http://www.elsotanillo.net/2015/05/a-quick-and-neat-orchestrator-using-gnu-parallel/
|
||
|
||
* Execute commands on multiple computers using GNU Parallel (setting
|
||
up a cluster on the cheap)
|
||
https://spectraldifferences.wordpress.com/2015/04/26/execute-commands-on-multiple-computers-using-gnu-parallel-setting-up-a-cluster-on-the-cheap/
|
||
|
||
* Functions and GNU parallel for effective cluster load management
|
||
http://genomespot.blogspot.dk/2015/04/functions-and-gnu-parallel-for.html
|
||
|
||
* Use parallel processing to save time importing databases
|
||
http://drupalsun.com/node/41854
|
||
|
||
* Run multiple ssh commands in parallel with GNU Parallel
|
||
http://www.ameir.net/blog/archives/380-run-multiple-ssh-commands-in-parallel-with-gnu-parallel.html
|
||
|
||
* Importing huge databases faster
|
||
https://www.lullabot.com/blog/article/importing-huge-databases-faster
|
||
|
||
* Parallel? Gnu parallel! https://debian.pro/1834
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20150422
|
||
|
||
New in this release:
|
||
|
||
* Security fix. An attacker on the local system could make you
|
||
overwrite one of your own files with a single byte. The problem
|
||
exist when you use --compress or --tmux or --pipe or --cat or
|
||
--fifo. The attacker must figure out the randomly chosen file name
|
||
and create a symlink within a time window of 15 ms.
|
||
|
||
* --shuf will generate all jobs, and shuffle them before running
|
||
them. This is useful to get a quick preview of the results before
|
||
running the full batch.
|
||
|
||
* GNU Parallel now has a DOI: https://dx.doi.org/10.5281/zenodo.16303
|
||
|
||
* GNU Parallel was cited in: Scaling Machine Learning for Target
|
||
Prediction in Drug Discovery using Apache Spark
|
||
https://cris.cumulus.vub.ac.be/portal/files/5147244/spark.pdf
|
||
|
||
* GNU Parallel was cited in: Bayesian inference of protein structure
|
||
from chemical shift data https://peerj.com/articles/861/
|
||
|
||
* GNU Parallel was cited in: Toward Enhanced Metadata Quality of
|
||
Large-Scale Digital Libraries: Estimating Volume Time Range
|
||
https://www.ideals.illinois.edu/bitstream/handle/2142/73656/186_ready.pdf
|
||
|
||
* GNU Parallel was cited in: Experimental study on the Wind Farm
|
||
Substation Cable Installation Problem
|
||
http://i11www.iti.uni-karlsruhe.de/_media/teaching/theses/ma-schmitz-14.pdf
|
||
|
||
* GNU Parallel was used in: landsat-gifworks
|
||
https://github.com/KAPPS-/landsat-gifworks
|
||
|
||
* GNU Parallel was used in: https://github.com/exascience/elprep
|
||
|
||
* GNU Parallel was used in:
|
||
http://search.cpan.org/~jillrowe/HPC-Runner-GnuParallel-0.01/
|
||
|
||
* GNU Parallel was used in:
|
||
http://search.cpan.org/~ajpage/Bio-Roary-2.0.7/lib/Bio/Roary/JobRunner/Parallel.pm
|
||
|
||
* GNU Parallel was used in: Rapid haploid SNP calling
|
||
https://github.com/tseemann/snippy
|
||
|
||
* Pictures and Metadata
|
||
http://www.ozzy.no/2015/02/05/pictures-and-metadata/
|
||
|
||
* Task automation with bash and parallel
|
||
https://biowize.wordpress.com/2015/03/23/task-automation-with-bash-and-parallel/
|
||
|
||
* How To: Speed Up File Transfers in Linux using RSync with GNU
|
||
Parallel
|
||
http://www.yourownlinux.com/2015/04/speed-up-file-transfers-using-rsync-with-gnu-parallel.html
|
||
|
||
* Mirroring a Git Repository
|
||
https://avacariu.me/articles/mirroring-a-git-repository.html
|
||
|
||
* Add an ENVI header to JAXA Global Mangrove Watch PALSAR tiles
|
||
https://spectraldifferences.wordpress.com/2015/03/24/add-an-envi-header-to-jaxa-global-mangrove-watch-palsar-tiles/
|
||
|
||
* 你见过的最牛逼的命令行程序是什么？
|
||
http://www.zhihu.com/question/29257300
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20150322
|
||
|
||
New in this release:
|
||
|
||
* --number-of-cores respects 'taskset' on GNU/Linux.
|
||
|
||
* --joblog --pipe gives the data send and received in the log.
|
||
|
||
* GNU Parallel was tested to support 100 GB sized records in --pipe. A
|
||
few bugs was fixed to support >2 GB records. It works, but is rather
|
||
slow.
|
||
|
||
* GNU Parallel was cited in: RIG: Recalibration and Interrelation of
|
||
genomic sequence data with the GATK
|
||
http://www.g3journal.org/content/early/2015/02/13/g3.115.017012.full.pdf+html
|
||
|
||
* GNU Parallel was cited in: MPI-blastn and NCBI-TaxCollector:
|
||
Improving metagenomic analysis with high performance classification
|
||
and wide taxonomic attachment
|
||
http://www.worldscientific.com/doi/abs/10.1142/S0219720014500139?af=R&
|
||
|
||
* GNU Parallel was cited in: Recent evolution in Rattus norvegicus is
|
||
shaped by declining effective population size
|
||
http://biorxiv.org/content/biorxiv/early/2015/03/01/015818.full.pdf
|
||
|
||
* GNU Parallel was cited in: Evidence for DCO+ as a probe of
|
||
ionization in the warm disk surface
|
||
http://arxiv.org/pdf/1503.02659.pdf
|
||
|
||
* GNU Parallel was cited in: De novo assembly and annotation of the
|
||
Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE
|
||
from raw genomic reads and comparative analysis with the yellow
|
||
fever mosquito (Aedes aegypti)
|
||
http://gbe.oxfordjournals.org/content/early/2015/03/11/gbe.evv050.full.pdf
|
||
|
||
* GNU Parallel was cited in: A General Approach to Network
|
||
Configuration Analysis
|
||
http://research.microsoft.com/en-us/um/people/ratul/papers/nsdi2015-batfish.pdf
|
||
|
||
* GNU Parallel was cited in: Scrimer: designing primers from
|
||
transcriptome data
|
||
http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12403/pdf
|
||
|
||
* GNU Parallel was cited in: Efficient Retrieval of Key Material for
|
||
Inspecting Potentially Malicious Traffic in the Cloud
|
||
http://sacko.uk/pdf/2015.1.pdf
|
||
|
||
* GNU Parallel will be presented at Strataconf: Poor Man's Parallel
|
||
Pipelines
|
||
http://strataconf.com/big-data-conference-uk-2015/public/schedule/detail/40031
|
||
|
||
* GNU Parallel was used in:
|
||
https://github.com/alexbyrnes/FCC-Political-Ads_The-Code
|
||
|
||
* GNU Parallel was used in: https://github.com/martymac/fpart
|
||
|
||
* GNU Parallel was used in:
|
||
https://github.com/hoytak/diabetic-retinopathy-code
|
||
|
||
* GNU Parallel was used in:
|
||
https://github.com/mehmattski/HybSeqPipeline
|
||
|
||
* GNU Parallel was used in:
|
||
http://search.cpan.org/~ajpage/Bio-Roary-2.0.0/lib/Bio/Roary/JobRunner/Parallel.pm
|
||
|
||
* Using GNU Parallel on a Raspberry Pi cluster:
|
||
http://www.dcglug.org.uk/cluster-progress/
|
||
|
||
* An introduction to vector tiling and map reduce in postgis:
|
||
http://dimensionaledge.com/intro-vector-tiling-map-reduce-postgis/
|
||
|
||
* Running scripts in parallel with GNU Parallel:
|
||
http://code.jasonbhill.com/2015/03/
|
||
|
||
* Mahout: Parallelising the creation of DecisionTrees:
|
||
http://www.markhneedham.com/blog/2012/12/27/mahout-parallelising-the-creation-of-decisiontrees/
|
||
|
||
* High-Performance Scientific Computing: Running serial jobs in
|
||
parallel
|
||
https://support.scinet.utoronto.ca/education/staticpublic/course178/serial.pdf
|
||
|
||
* Parallel cardinality on your laptop
|
||
https://highonscience.wordpress.com/2015/03/15/parallel-cardinality-on-your-laptop/
|
||
|
||
* Experiments about a better locate using grep
|
||
http://a3nm.net/blog/better_locate.html
|
||
|
||
* Homework with GNU Parallel:
|
||
https://support.scinet.utoronto.ca/education/staticpublic/course178content349.html
|
||
|
||
* Parallel - Jobs in Skripten parallelisieren:
|
||
https://slzm.de/blog/linux-tool-des-tages-parallel-jobs-in-skripten-parallelisieren/#more-612
|
||
|
||
* GNU Parallel, czyli 100% użycia procesora
|
||
http://matmatyk.blogspot.dk/2015/03/gnu-parallel-czyli-100-uzycia-procesora.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20150222
|
||
|
||
* --tmux has gotten a major overhaul.
|
||
|
||
* GNU Parallel was cited in: RaftLib: A C++ Template Library for High
|
||
Performance Stream Parallel Processing
|
||
http://www.cs.wustl.edu/~lip/pubs/pmam15_jbeard.pdf
|
||
|
||
* GNU Parallel was cited in: Quantifying properties of hot and dense
|
||
QCD matter through systematic model-to-data comparison
|
||
http://arxiv.org/pdf/1502.00339.pdf
|
||
|
||
* GNU Parallel was cited in: Towards Collaborative Exploration and
|
||
Analysis of Big Data from Mars: A Noachis Terra Case Study
|
||
http://link.springer.com/chapter/10.1007/978-3-319-13865-7_25
|
||
|
||
* GNU Parallel was used (unfortunately with wrong citation) in:
|
||
Performance and Scaling Comparison Study of RDBMS and NoSQL
|
||
(MongoDB)
|
||
http://ijact.in/wp-content/uploads/2014/11/COMPUSOFT-311-1270-1275.pdf
|
||
|
||
* GNU Parallel was used (unfortunately without citation) in: Parallel
|
||
Implementation of Big Data Pre-Processing Algorithms for Sentiment
|
||
Analysis of Social Networking Data
|
||
http://www.researchmathsci.org/IJFMAart/ijfma-v6n2-7.pdf
|
||
|
||
* GNU Parallel was used (unfortunately without citation) in: SpeedSeq:
|
||
Ultra-fast personal genome analysis and interpretation
|
||
http://biorxiv.org/content/biorxiv/early/2014/12/05/012179.full.pdf
|
||
|
||
* Zip Folders with GNU Parallel
|
||
http://fazky.github.io/posts/Linux/2015-01-07-GNU-Parallel.html
|
||
|
||
* Using GNU Parallel with Freesurfer
|
||
http://programminginadarkroom.blogspot.dk/2015/02/using-gnu-parallel-with-freesurfer.html
|
||
|
||
* GNU Parallel is used in Velociraptor: https://github.com/ericwhyne/Velociraptor
|
||
|
||
* Marcus Beach GNU Parallel http://marcusbeach.co/gnu-parallel/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20150122
|
||
|
||
* Remote jobs now send stderr (standard error) to stderr (standard
|
||
error) instead of stdout (standard output).
|
||
|
||
* Remote execution command is now packed using base64 encoded
|
||
bzip2. This means that big environments (app. 100 KB) can be
|
||
transferred. This change makes remote execution alpha quality.
|
||
|
||
* --semaphoretimeout now takes a negative value. This means give up if
|
||
the semaphore is not gotten within the timeout.
|
||
|
||
* --halt -1 and -2 now means halt if a job succeeds (so the opposite
|
||
of 1 and 2).
|
||
|
||
* --no-keep-order will reverse --keep-order.
|
||
|
||
* Bash's second fix of shellshock caused --env to break again when
|
||
exporting functions. This has been fixed again.
|
||
|
||
* A semibig refactoring of big functions. All non-trivial functions
|
||
are now less than 100 lines. The refactoring makes this release beta
|
||
quality.
|
||
|
||
* A description of the design decisions for GNU Parallel can be found
|
||
in 'man parallel_design'.
|
||
|
||
* A bug fix in replacement strings caused rewrite of the replacement
|
||
function. This makes use of replacement strings alpha quality.
|
||
|
||
* GNU Parallel was cited in: Improving Energy and Performance with
|
||
Spintronics Caches in Multicore Systems
|
||
http://link.springer.com/chapter/10.1007/978-3-319-14313-2_24
|
||
|
||
* GNU Parallel was cited in: Parallel post-processing with MPI-Bash
|
||
http://dl.acm.org/citation.cfm?id=2691137
|
||
|
||
* GNU Parallel was cited in: Distinguishing cause from effect using
|
||
observational data: methods and benchmarks
|
||
http://arxiv-web3.library.cornell.edu/pdf/1412.3773.pdf
|
||
|
||
* GNU Parallel was cited in: Data Science at the Command Line
|
||
http://cdn.oreillystatic.com/oreilly/booksamplers/9781491947852_sampler.pdf
|
||
|
||
* GNU Parallel was cited in: Resolution of Genetic Map Expansion
|
||
Caused by Excess Heterozygosity in Plant Recombinant Inbred
|
||
Populations http://www.g3journal.org/content/4/10/1963.full.pdf
|
||
|
||
* GNU Parallel was cited in: Bayesian Inference of Protein Structure
|
||
from Chemical Shift Data https://peerj.com/preprints/692v1.pdf
|
||
|
||
* GNU Parallel was cited in: Clonal interference and Mullerʼs ratchet
|
||
in spatial habitats http://iopscience.iop.org/1478-3975/11/5/056003
|
||
|
||
* GNU Parallel was cited in: Computação Verde na Camada de Aplicação
|
||
https://linux.ime.usp.br/~tpaiva/mac0499/files/monografia.pdf
|
||
|
||
* GNU Parallel was cited in: Frameshift alignment: statistics and
|
||
post-genomic applications
|
||
http://bioinformatics.oxfordjournals.org/content/30/24/3575.full.pdf+html
|
||
|
||
* GNU Parallel was cited in: Towards Recommender Engineering Tools and
|
||
Experiments for Identifying Recommender Differences
|
||
http://elehack.net/research/thesis/mde-thesis.pdf
|
||
|
||
* GNU Parallel was cited in: Speaker Environment Classification Using
|
||
Rhythm Metrics in Levantine Arabic Dialect
|
||
http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6923918
|
||
|
||
* GNU Parallel was cited in: A Formal Proof Of The Kepler Conjecture
|
||
http://arxiv.org/pdf/1501.02155.pdf
|
||
|
||
* GNU Parallel was cited in: Allocation Policy Analysis for Cache
|
||
Coherence Protocols for STT-MRAM-based caches
|
||
http://conservancy.umn.edu/bitstream/handle/11299/169362/Nandkar_umn_0130M_15551.pdf
|
||
|
||
* GNU Parallel was cited in: Using Trusted Platform Module for
|
||
securing virtual environment access in Cloud
|
||
http://dar.aucegypt.edu:8080/bitstream/handle/10526/4237/Using%20Trusted%20Platform%20Module%20for%20Securing%20Virtual%20Environment%20Access%20in%20Cloud.pdf
|
||
|
||
* GNU Parallel was cited in: Weakly Supervised Learning for
|
||
Compositional Sentiment Recognition
|
||
http://computerlinguist.org/static/downloads/ma-thesis/Master_Thesis-Michael_Haas-Weakly_Supervised_Learning_for_Compositional_Sentiment_Recognition.pdf
|
||
|
||
* GNU Parallel was cited in: Agility and Performance in Elastic
|
||
Distributed Storage http://dl.acm.org/citation.cfm?id=2668129
|
||
|
||
* GNU Parallel was used (unfortunately without citation) in: Large
|
||
Scale Author Name Disambiguation in Digital Libraries
|
||
http://semanticommunity.info/@api/deki/files/31523/P227_3546.pdf
|
||
|
||
* GNU Parallel is used in BEDOPS:
|
||
https://media.readthedocs.org/pdf/bedops/v2p5p0/bedops.pdf
|
||
|
||
* Job ad asking for GNU Parallel skills:
|
||
http://www.aplitrak.com/?adid=dXMzMTYxMjQuMzg0MTkuMTU1MEBtYW5wb3dlcmZveG5hLmFwbGl0cmFrLmNvbQ#sthash.kYCIhhty.KcoT6HnJ.dpbs
|
||
|
||
* GNU Parallel: Open Source For You (OSFY) magazine, October 2013
|
||
edition
|
||
http://www.shakthimaan.com/posts/2014/11/27/gnu-parallel/news.html
|
||
|
||
* Multithreaded Encryption and Compression
|
||
http://www.krazyworks.com/multithreaded-encryption-and-compression/
|
||
|
||
* GNU Parallel on OSX and Linux
|
||
https://darknightelf.wordpress.com/2015/01/01/gnu-parallel-on-osx/
|
||
|
||
* How to build gnu parallel from source on Ubuntu PC?
|
||
http://blog.ovidiuparvu.com/build-gnu-parallel-source-ubuntu-pc/
|
||
|
||
* GNU parallel for openaddr-process-one
|
||
https://nelsonslog.wordpress.com/2015/01/09/gnu-parallel-for-openaddr-process-one/
|
||
|
||
* From SRA Project to FastQ http://danielecook.com/sra-project-fastq/
|
||
|
||
* Software Development Tooling
|
||
http://www.computer.org/csdl/mags/so/2014/06/mso2014060021.pdf
|
||
|
||
* コマンドを並列に実行するGNU parallelがとても便利
|
||
http://bicycle1885.hatenablog.com/entry/2014/08/10/143612
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20141122
|
||
|
||
* Remote systems can be divided into hostgroups (e.g. web and db) by
|
||
prepending '@groupname/' to the sshlogin. Multiple groups can be
|
||
given by separating groups with '+'. E.g. @web/www1 @web+db/www2
|
||
@db/mariadb
|
||
|
||
* Remote execution can be restricted to servers that are part of one
|
||
or more groups by '@groupname' as an sshlogin. Multiple groups can
|
||
be given by separating groups with '+'. E.g. -S @web or -S @db+web
|
||
|
||
* With --hostgroup you can restrict arguments to certain hostgroups by
|
||
appending '@groupname' to the argument. Multiple groups can be
|
||
given by separating groups with '+'. E.g. my_web_arg@web
|
||
db-or-web-arg@db+web db-only-arg@db Thanks to Michel Courtine for
|
||
developing a prototype for this.
|
||
|
||
* GNU Parallel was cited in: HTSeq-Hadoop: Extending HTSeq for
|
||
Massively Parallel Sequencing Data Analysis using Hadoop
|
||
http://essenceofescience.se/wp-content/uploads/2014/11/Siretskiy.pdf
|
||
|
||
* GNU Parallel was cited in: SlideToolkit: An Assistive Toolset for
|
||
the Histological Quantification of Whole Slide Images
|
||
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110289
|
||
|
||
* GNU Parallel was cited in: Exploring a multiprocessor design space
|
||
to analyze the impact of using STT-RAM in the memory hierarchy
|
||
http://conservancy.umn.edu/bitstream/handle/11299/167286/Borse_umn_0130M_15431.pdf
|
||
|
||
* Command-Line OCR with Tesseract on Mac OS X
|
||
https://ryanfb.github.io/etc/2014/11/13/command_line_ocr_on_mac_os_x.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20141022
|
||
|
||
* --env was changed to deal with Bash's new way of exporting a function.
|
||
|
||
* GNU Parallel was cited in: Exclusion of cosmic rays in
|
||
protoplanetary disks. II. Chemical gradients and observational
|
||
signatures http://iopscience.iop.org/0004-637X/794/2/123/article
|
||
|
||
* GNU Parallel was cited in: Application of Machine Learning to
|
||
Algorithm Selection for TSP
|
||
http://www.dbai.tuwien.ac.at/staff/musliu/art_ictai_cam.pdf
|
||
|
||
* GNU Parallel was cited in: Performance Models for LTE-Advanced
|
||
Random Access
|
||
http://repository.asu.edu/attachments/137242/content/Tyagi_asu_0010E_14116.pdf
|
||
|
||
* GNU Parallel was used (unfortunately without citation) in: De Novo
|
||
Insertions and Deletions of Predominantly Paternal Origin Are
|
||
Associated with Autism Spectrum Disorder
|
||
http://www.cell.com/cms/attachment/2019079667/2039310868/mmc1.pdf
|
||
|
||
* GNU Parallel was determined 'popular' by Statistical Analysis of
|
||
Popular Open Source Software Projects and Their Communities
|
||
http://andiwre.itmaranatha.org/prosiding/ICITEE2014/PaperAndiWRE-ICITEE2014.pdf
|
||
|
||
* GNU Parallel is demonstrated in: Data Science at the Command Line:
|
||
Facing the Future with Time-Tested Tools
|
||
|
||
* GNU Parallel was covered in a talk at Sydney Perl Mongers group
|
||
http://www.openfusion.net/talks/pwp/#24
|
||
|
||
* GNU Parallel and how to get started with it
|
||
http://www.jduck.net/blog/2014/09/30/gnu-paralell/
|
||
|
||
* Behat/Selenium/Parallel
|
||
http://jaffamonkey.com/behat-selenium-parallel/
|
||
|
||
* Comparing Golang, Scala, Elixir and Ruby for ETL
|
||
http://www.dimroc.com/2014/09/29/etl-language-showdown/
|
||
|
||
* Assemble a list of which of these hosts are up or down
|
||
http://opsfun.wordpress.com/2014/03/31/gnu-parallel/
|
||
|
||
* Running commands on many nodes simultaneously
|
||
http://opsfun.wordpress.com/2014/03/31/19/
|
||
|
||
* Ubuntu 13.04でGNU ParallelをGNUモードで動かす
|
||
http://qiita.com/YusukeSuzuki@github/items/7b96b5876bf980f21e85
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20140922
|
||
|
||
* If the file give as --sshloginfile is changed it will be re-read
|
||
when a job finishes though at most once per second. This makes it
|
||
possible to add and remove hosts while running.
|
||
|
||
* Brutha uses GNU Parallel https://pypi.python.org/pypi/brutha/1.0.2
|
||
|
||
* OCRmyPDF uses GNU Parallel https://github.com/fritz-hh/OCRmyPDF/
|
||
|
||
* GNU Parallel was presented at Balti and Bioinformatics "On-Air"
|
||
http://youtu.be/UtXlr19xTh8?t=2h5m0s
|
||
|
||
* Pleiades Plus uses GNU Parallel
|
||
https://github.com/ryanfb/pleiades-plus
|
||
|
||
* Imagemagick and GNU Parallel
|
||
http://deepdish.io/2014/09/15/gnu-parallel/
|
||
|
||
* GNU Parallel (Sebuah Uji Coba)
|
||
http://pr4ka5a.wordpress.com/2014/09/04/gnu-parallel-sebuah-uji-coba/
|
||
|
||
* GNU Parallel: 并行执行Linux命令
|
||
http://blog.csdn.net/xzz_hust/article/details/39183837
|
||
|
||
|
||
20140822
|
||
|
||
* GNU Parallel now uses the same shell it was started from as the
|
||
command shell for local jobs. So if GNU Parallel is started from
|
||
tcsh it will use tcsh as its shell even if the login $SHELL is
|
||
different. For remote jobs the login $SHELL will be used.
|
||
|
||
* The whole current environment in bash can be copied by using a shell
|
||
wrapper function (Search manual for env_parallel).
|
||
|
||
* --plus adds the replacement strings {+/} {+.} {+..} {+...} {..}
|
||
{...} {/..} {/...}. The idea being that '+foo' matches the opposite
|
||
of 'foo' and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..}
|
||
= {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
|
||
|
||
* GNU Parallel now deals correctly with the combination
|
||
rsync-3.1.X-client and rsync-2.5.7-server
|
||
|
||
* GNU Parallel was cited in: A Web Service for Scholarly Big Data
|
||
Information Extraction
|
||
http://patshih.ist.psu.edu/publications/Williams-CiteSeerExtractor-ICWS14.pdf
|
||
|
||
* Comparison of the speed of different GNU Parallel versions:
|
||
http://lists.gnu.org/archive/html/parallel/2014-08/msg00030.html
|
||
|
||
* GNU Parallel was covered in the webcast 2014-08-20: Data Science at
|
||
the Command Line http://www.oreilly.com/pub/e/3115
|
||
|
||
* Distributed processing with GNU parallel
|
||
http://kazjote.eu/2014/08/11/distributed-processing-with-gnu-parallel
|
||
|
||
* A Peek into GNU Parallel
|
||
http://blog.dataweave.in/post/94238943763/a-peek-into-gnu-parallel
|
||
|
||
* Сборка GNU parallel для CentOS/RHEL
|
||
http://www.stableit.ru/2014/07/gnu-parallel-centosrhel.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20140722
|
||
|
||
* {= perl expression =} can be used as replacement string. The
|
||
expression should modify $_. E.g. {= s/\.gz$// =} to remove .gz from
|
||
the string. This makes replacement strings extremely flexible.
|
||
|
||
* Positional perl expressions (similar to {2}) are given as {=2 perl
|
||
expression=} where 2 is the position.
|
||
|
||
* One small backwards incompatibility: {1}_{2} will replace {2} with
|
||
the empty string if there is only one argument. Previously {2} would
|
||
have been left untouched.
|
||
|
||
* Replacement strings can be defined using --rpl. E.g. parallel --rpl
|
||
'{.gz} s/\.gz$//' echo {.gz} ::: *.gz
|
||
|
||
* The parenthesis around {= perl expression =} can be changed with
|
||
--parens.
|
||
|
||
* --tmux will direct the output to a tmux session instead of
|
||
files. Each running jobs will be in its own window.
|
||
|
||
* --halt 10% will stop spawning new jobs if 10% failed so far.
|
||
|
||
* GNU Parallel was cited in: bammds: A tool for assessing the ancestry
|
||
of low depth whole genome data using multidimensional scaling (MDS)
|
||
http://bioinformatics.oxfordjournals.org/content/early/2014/06/28/bioinformatics.btu410.abstract
|
||
|
||
* GNU Parallel was cited in: Molecular ferroelectric contributions to
|
||
anomalous hysteresis in hybrid perovskite solar cells
|
||
http://people.bath.ac.uk/aw558/publications/2014/arxiv_hysteresis_14.pdf
|
||
|
||
* GNU Parallel was cited in: Energy Sorghum-a genetic model for the
|
||
design of C4 grass bioenergy crops
|
||
http://jxb.oxfordjournals.org/content/early/2014/06/20/jxb.eru229.short
|
||
|
||
* GNU Parallel was cited in: Web-scale Content Reuse Detection
|
||
www.isi.edu/~johnh/PAPERS/Ardi14a.pdf
|
||
|
||
* Tell your friends to sign up for the Webcast at 2014-08-20 covering
|
||
GNU Parallel: Data Science at the Command Line
|
||
http://www.oreilly.com/pub/e/3115
|
||
|
||
* GNU Parallel all the things!
|
||
http://longwayaround.org.uk/notes/gnu-parallel-all-the-things/
|
||
|
||
* Shell command composition and dispatch
|
||
http://lukeluo.blogspot.dk/2014/07/linux-virtual-console6-shell-command.html
|
||
|
||
* Parallelising plink (or anything else) the easy way
|
||
http://chrisladroue.com/2012/03/parallelising-plink-or-anything-else-the-easy-way/
|
||
|
||
* Easy and cheap cluster building on AWS
|
||
https://grapeot.me/easy-and-cheap-cluster-building-on-aws.html
|
||
|
||
* Paralelizace běžných činností v konzoli pomocí GNU Parallel
|
||
http://www.abclinuxu.cz/clanky/paralelizace-beznych-cinnosti-v-konzoli-pomoci-gnu-parallel
|
||
|
||
* [原] Ubuntu 下使用 parallel 命令的注意事项
|
||
http://blog.ailms.me/2014/06/28/ubuntu-with-parallel.html
|
||
|
||
* 简单的并行, 可使用GNU parallel
|
||
http://jerkwin.github.io/2014/06/10/GNU-parallel/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20140622
|
||
|
||
* --shebang and --shebang-wrap now works on FreeBSD.
|
||
|
||
* --pipepart works with --header, --regexp, --cat and --fifo.
|
||
|
||
* ./configure --disable-documentation will not build documentation.
|
||
|
||
* {%} works as job slot.
|
||
|
||
* GNU Parallel was cited in: Energy Efficient, High-speed
|
||
Communication in WSNs
|
||
https://gupea.ub.gu.se/bitstream/2077/35801/1/gupea_2077_35801_1.pdf
|
||
|
||
* GNU Parallel was cited in: Ferroelectric contributions to anomalous
|
||
hysteresis in hybrid perovskite solar cells
|
||
http://arxiv.org/pdf/1405.5810.pdf
|
||
|
||
* Processes Paralleling to Speed up Computing and Tasks Execution in
|
||
Linux
|
||
http://kukuruku.co/hub/nix/processes-paralleling-to-speed-up-computing-and-tasks-execution-in-linux
|
||
|
||
* Moving / Copying lots of s3 files quickly using gnu parallel
|
||
http://blog.aclarke.eu/moving-copying-lots-of-s3-files-quickly-using-gnu-parallel/
|
||
|
||
* Speeding up grep log queries with GNU Parallel
|
||
http://www.tripwire.com/state-of-security/incident-detection/speeding-grep-queries-gnu-parallel/
|
||
|
||
* Ubuntu - Gnu parallel - It's awesome
|
||
http://kasunweranga.blogspot.dk/2014/06/ubuntu-gnu-parallel-its-awesome.html
|
||
|
||
* Export quicklooks with vector overlay using TuiView
|
||
http://spectraldifferences.wordpress.com/2014/03/08/export-quicklooks-with-vector-overlay-using-tuiview/
|
||
|
||
* GNU Parallel指南 http://my.oschina.net/enyo/blog/271612
|
||
|
||
* GNU parallelで違和感 http://jarp.does.notwork.org/diary/201405c.html#201405301
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20140522
|
||
|
||
* Use --semaphoretimeout to ignore the semaphore lock after a while.
|
||
|
||
* {%} introduced as job slot replacement string. It has known bugs.
|
||
|
||
* --slotreplace changes slot replacement string.
|
||
|
||
* GNU Parallel officially in Solaris 11.2beta
|
||
https://blogs.oracle.com/alanc/entry/solaris_11_2_changes_to
|
||
|
||
* GNU Parallel was cited in: A Comparison of Antenna Placement
|
||
Algorithms http://abhinavjauhri.com/publications/eap.pdf
|
||
|
||
* Using GNU Parallel on a PBS cluster (nice use of --shebang-wrap)
|
||
https://docs.it4i.cz/anselm-cluster-documentation/resource-allocation-and-job-execution/capacity-computing
|
||
|
||
* BioLite uses GNU Parallel: https://bitbucket.org/caseywdunn/biolite
|
||
|
||
* Isitdown uses GNU Parallel: http://www.isi.edu/~calvin/isitdown.md
|
||
|
||
* Convert FLAC to MP3 with GNU parallel
|
||
http://www.blogobramje.nl/posts/Convert_FLAC_to_MP3_with_GNU_parallel/
|
||
|
||
* JD Edwards Business Function Documentation
|
||
http://www.azertech.net/content/jd-edwards-business-function-documentation
|
||
|
||
* Tools of the trade http://blog.eikeland.se/2014/05/01/tools-of-the-trade/
|
||
|
||
* How I start a bioinformatics project
|
||
http://nickloman.github.io/2014/05/14/how-i-start-a-bioinformatics-project/
|
||
|
||
* No:The-Me GNU Parallel http://adityalaghate.in/gnu-parallel.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20140422
|
||
|
||
* --pipepart is a highly efficient alternative to --pipe if the input
|
||
is a real file and not a pipe.
|
||
|
||
* If using --cat or --fifo with --pipe the {} in the command will be
|
||
replaced with the name of a physical file and a fifo respectively
|
||
containing the block from --pipe. Useful for commands that cannot
|
||
read from standard input (stdin).
|
||
|
||
* --controlmaster has gotten an overhaul and is no longer
|
||
experimental.
|
||
|
||
* --env is now copied when determining CPUs on remote system. Useful
|
||
for copying $PATH if parallel is not in the normal path.
|
||
|
||
* --results now chops the argument if the argument is longer than the
|
||
allowed path length.
|
||
|
||
* Build now survives if pod2* are not installed.
|
||
|
||
* The git repository now contains tags of releases.
|
||
|
||
* GNU Parallel was cited in: Proactive System for Digital Forensic
|
||
Investigation
|
||
http://dspace.library.uvic.ca:8080/bitstream/handle/1828/5237/Alharbi_Soltan_PhD_2014.pdf
|
||
|
||
* GNU Parallel was cited in: Beyond MAP estimation with the
|
||
track-oriented multiple hypothesis tracker
|
||
http://ieeexplore.ieee.org/xpl/abstractReferences.jsp?tp=&arnumber=6766651&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6766651
|
||
|
||
* GNU Parallel was cited in: Prokka: rapid prokaryotic genome
|
||
annotation
|
||
http://bioinformatics.oxfordjournals.org/content/early/2014/03/18/bioinformatics.btu153.short
|
||
|
||
* GNU Parallel was used (unfortunately with improper citation) in:
|
||
Perspectives in magnetic resonance: NMR in the post-FFT era
|
||
http://www.sciencedirect.com/science/article/pii/S1090780713003054
|
||
|
||
* GNU Parallel is used in https://github.com/cc2qe/speedseq
|
||
|
||
* Batch XML validation at the command line.
|
||
http://horothesia.blogspot.dk/2014/04/batch-xml-validation-at-command-line.html
|
||
|
||
* freebayes-parallel uses GNU Parallel
|
||
https://github.com/ekg/freebayes/commit/31ee997984cebe8a196381c3de57e618e34a2281
|
||
|
||
* Org-mode with Parallel Babel http://draketo.de/english/emacs/parallel-babel#sec-2
|
||
|
||
* Speeding Up Grep Log Queries with GNU Parallel
|
||
http://www.cybersecurity.io/speeding-grep-queries-gnu-parallel/
|
||
|
||
* How to run tbss_2_reg in parallel
|
||
http://tadpolebrainimaging.blogspot.dk/2014/03/how-to-run-tbss2reg-in-parallel.html
|
||
|
||
* GNU parallel example: blastn https://asciinema.org/a/8775
|
||
|
||
* Iterative DNS Brute Forcing
|
||
http://www.room362.com/blog/2014/02/19/iterative-dns-brute-forcing/
|
||
|
||
* Ejecutando comandos en paralelo
|
||
http://jesusmercado.com/guias/ejecutando-comandos-en-paralelo/
|
||
|
||
* Ejecutando en paralelo en bash (ejemplo con rsync)
|
||
http://eithel-inside.blogspot.dk/2014/04/ejecutando-en-paralelo-en-bash-ejemplo.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20140322
|
||
|
||
* Offical package for Alpine Linux now exists:
|
||
http://alpinelinux.org/apk/main/x86/parallel
|
||
|
||
* GNU Parallel was cited in: Estimating uncertainties in statistics
|
||
computed from direct numerical simulation
|
||
http://dx.doi.org/10.1063/1.4866813
|
||
|
||
* GNU Parallel was cited in: Vehicle routing problems with time
|
||
windows and multiple service workers: a systematic comparison
|
||
between ACO and GRASP
|
||
http://link.springer.com/article/10.1007/s10100-014-0341-z
|
||
|
||
* GNU Parallel, quick and easy
|
||
http://www.reganmian.net/blog/2014/03/09/gnu-parallel-quick-and-easy/
|
||
|
||
* Using Multiple CPU Cores With Command Line Tools
|
||
http://prateekvjoshi.com/2014/03/07/using-multiple-cpu-cores-with-command-line-tools/
|
||
|
||
* Batch convert mp3 CBR to VBR
|
||
http://blogs.zercle.com/bouroo/2013/03/batch-convert-mp3-cbr-to-vbr/
|
||
|
||
* Running Behat in parallel with Selenium grid
|
||
http://zalas.eu/running-behat-in-parallel-with-selenium-grid/
|
||
|
||
* Git-Mirror per cronjob aktuell halten
|
||
https://www.schtobia.de/2013/git-mirror-per-cronjob-aktuell-halten/
|
||
|
||
* Пишем многопоточный скрипт на bash
|
||
http://dafter.ru/duf/howto/130.html
|
||
|
||
* 如何利用多核CPU来加速你的Linux命令
|
||
http://www.chinadmd.com/file/xpcr6wpctzwtuu3ivwiaatcs_1.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20140222
|
||
|
||
* --tollef has been retired.
|
||
|
||
* --compress has be redesigned due to bugs.
|
||
|
||
* Format of --eta and --joblog has changed slightly.
|
||
|
||
* GNU Parallel was cited in: Speaker Verification and Keyword Spotting
|
||
Systems for Forensic Applications
|
||
http://lantana.tenet.res.in/website_files/thesis/Phd/srikanth.pdf
|
||
|
||
* GNU Parallel was cited in: Scaleable Code Clone Detection
|
||
http://scg.unibe.ch/archive/phd/schwarz-phd.pdf
|
||
|
||
* GNU Parallel was cited in: Clone Detection that scales
|
||
http://scg.unibe.ch/archive/masters/Vogt14a.pdf
|
||
|
||
* GNU Parallel was cited in: Scalable Positional Analysis for Studying
|
||
Evolution of Nodes in Networks
|
||
http://arxiv-web3.library.cornell.edu/pdf/1402.3797
|
||
|
||
* GNU Parallel was cited in: Aggregate Characterization of User
|
||
Behavior in Twitter and Analysis of the Retweet Graph
|
||
http://arxiv.org/pdf/1402.2671v1
|
||
|
||
* GNU Parallel was used (unfortunately without citation) in: Causal
|
||
Network Models for Predicting Compound Targets and Driving Pathways
|
||
in Cancer
|
||
http://jbx.sagepub.com/content/early/2014/02/10/1087057114522690.full
|
||
|
||
* GNU Parallel was used (unfortunately without citation) in:
|
||
Performance and Energy Efficiency of Common Compression /
|
||
Decompression Utilities
|
||
http://www.researchgate.net/publication/243962643_Performance_and_Energy_Efficiency_of_Common_CompressionDecompression_Utilities_An_Experimental_Study_in_Mobile_and_Workstation_Computer_Platforms/file/3deec51d1dbc0474f9.pdf
|
||
|
||
* GNU Parallel was used (unfortunately without citation) in: SpringFS:
|
||
Bridging Agility and Performance in Elastic Distributed Storage
|
||
http://www.istc-cc.cmu.edu/publications/papers/2014/SpringFS-FAST14.pdf
|
||
|
||
* GNU Parallel was recommended (without citation) in: Redesigning the
|
||
Specificity of Protein-DNA Interactions with Rosetta
|
||
http://link.springer.com/protocol/10.1007/978-1-62703-968-0_17
|
||
|
||
* GNU Parallel is co-distributed with RepeatExplorer
|
||
http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/repeatexplorer/README.txt
|
||
|
||
* Convert MP3 to a scrolling spectrum waterfall plot video
|
||
http://jdesbonnet.blogspot.dk/2014/02/convert-mp3-to-scrolling-spectrum.html
|
||
|
||
* PHP wrapper class for the GNU Parallel tool
|
||
https://github.com/geopal-solutions/gnu-parallel-wrapper/tree/master
|
||
|
||
* Exploratory Data Analysis http://www.slideshare.net/thinrhino/gnunify
|
||
|
||
* Copias de archivos con rsync y parallel
|
||
http://linuxmanr4.com/2014/02/20/copias-de-archivos-con-rsync-y-parallel
|
||
|
||
* Single-Thread-Programme auf Multicore-Rechnern parallelisieren
|
||
http://www.adlerweb.info/blog/2014/02/08/linux-single-thread-programme-auf-multicore-rechnern-parallelisieren
|
||
|
||
* Распараллеливаем процессы для ускорения вычислений и выполнения
|
||
заданий в Linux http://savepearlharbor.com/?p=210480
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20140122
|
||
|
||
* GNU Parallel was cited in: On the likelihood of multiple bit upsets
|
||
in logic circuits
|
||
http://arxiv-web3.library.cornell.edu/pdf/1401.1003
|
||
|
||
* HaploClique uses GNU Parallel
|
||
https://github.com/armintoepfer/haploclique
|
||
|
||
* Scraping NSScreencast
|
||
https://blog.nicolai86.eu/posts/2014-01-12/scraping-nsscreencast/
|
||
|
||
* 30 Cool Open Source Software I Discovered in 2013
|
||
http://www.cyberciti.biz/open-source/30-cool-best-open-source-softwares-of-2013/
|
||
|
||
* [Unix] 13. The power of doing things in Parallel
|
||
http://leetaey.tistory.com/384
|
||
|
||
* Parallel the execution of a job that read from stdin
|
||
http://www.linuxask.com/questions/parallel-the-execution-of-a-job-that-read-from-stdin
|
||
|
||
* Mon Make à moi (6:38-11:50)
|
||
http://videos.rennes.inria.fr/ReNaBI-GO2013/indexPierreLindenbaum.html
|
||
|
||
* Shell-Abarbeitung beschleunigen: Wie Sie mit parallelen Prozesse
|
||
effizienter in der Shell arbeiten
|
||
https://www.hosteurope.ch/blog/shell-abarbeitung-beschleunigen-wie-sie-mit-parallelen-prozesse-effizienter-in-der-shell-arbeiten/
|
||
|
||
* Summary of GNU Parallel tutorial
|
||
http://hacktracking.blogspot.dk/2014/01/gnu-parallel-tutorial.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20131222
|
||
|
||
* GNU Parallel now has a motto: For people who live life in the
|
||
parallel lane.
|
||
|
||
* Detect if the buffer dir $TMPDIR runs out of space. This changes a
|
||
central piece of code, making this release alpha quality.
|
||
|
||
* --keep-order --(n)onall will sort according to the sshlogin.
|
||
|
||
* Detect the number of CPUs on DEC Tru64.
|
||
|
||
* GNU sql: --list-tables for sqlite3.
|
||
|
||
* GNU Parallel was cited in: Variational Message-Passing: Extension to
|
||
Continuous Variables and Applications in Multi-Target Tracking
|
||
http://www.ics.uci.edu/~ajfrank/pubs/thesis.pdf
|
||
|
||
* GNU Parallel was cited in: Genome Assembly: Scaffolding Guided by
|
||
Related Genomes
|
||
https://www.duo.uio.no/handle/10852/37431
|
||
|
||
* GNU Parallel was cited in: Metagenomic analysis of Mariana Trench
|
||
sediment samples
|
||
http://repositorio.ul.pt/handle/10451/9436
|
||
|
||
* GNU Parallel was cited in: Diacritization, automatic segmentation
|
||
and labeling for Levantine Arabic speech
|
||
http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642556
|
||
|
||
* GNU Parallel was cited in: Investigation of emotion classification
|
||
using speech rhythm metrics
|
||
http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6642591
|
||
|
||
* GNU Parallel was cited in: A Rhythm-Based Analysis of Arabic Native
|
||
and Non-Native Speaking Styles
|
||
http://www.ijsps.com/uploadfile/2013/1128/20131128014413279.pdf
|
||
|
||
* GNU Parallel was cited in: Evolutionary optimization of wetlands
|
||
design
|
||
http://dl.acm.org/citation.cfm?id=2480400
|
||
|
||
* GNU Parallel was cited (unfortunately with wrong citation) in:
|
||
RDBMS vs NoSQL: Performance and Scaling Comparison
|
||
http://www.epcc.ed.ac.uk/sites/default/files/Dissertations/2012-2013/RDBMS%20vs%20NoSQL%20-%20Performance%20and%20Scaling%20Comparison.pdf
|
||
|
||
* GNU Parallel was used (without proper citation) in: Comprehensive
|
||
Analysis Pipeline for Discovery of Human Genetic Variation
|
||
http://www.google.com/patents/US20130311106
|
||
|
||
* Encrypt and decrypt in parallel with GPG
|
||
http://blog.tkassembled.com/412/encrypt-and-decrypt-in-parallel-with-gpg/
|
||
|
||
* Using GNU Parallel to create a SVM classifier
|
||
http://ivanyu.me/blog/2013/12/01/parallel/
|
||
|
||
* Parallel xz compression
|
||
http://anthon.home.xs4all.nl/rants/2013/parallel_xz/
|
||
|
||
* Got CPUs to burn? Put 'em to work with GNU parallel
|
||
http://baoilleach.blogspot.dk/2013/11/got-cpus-to-burn-put-em-to-work-with.html
|
||
|
||
* Parallel rsync
|
||
http://pastebin.com/JmnB9ffq
|
||
|
||
* Gnu Parallel for fun and profit
|
||
https://gist.github.com/celoyd/f7eb55ad69c9b33fd8c3
|
||
|
||
* Parallelization of Exploitation
|
||
http://rantsideasstuff.com/parallelization-of-exploitation/
|
||
|
||
* Running assemblies in parallel
|
||
https://khmer-protocols.readthedocs.org/en/v0.8.3/metagenomics/4-assemble.html
|
||
|
||
* Procesando la contabilidad del PP
|
||
http://www.neorazorx.com/2013/07/procesando-la-contabilidad-del-pp.html
|
||
|
||
* Mon make à moi (French)
|
||
http://www.slideshare.net/lindenb/mon-make-moi-tout-sauf-galaxy
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20131122
|
||
|
||
* A citation notice is printed on stderr only if stderr is a terminal,
|
||
the user has not specified --no-notice and the user has not run
|
||
--bibtex once. This makes the release alpha quality.
|
||
|
||
* --compress will compress temporary files. If the output is big and
|
||
very compressible this will take up less disk space in $TMPDIR and
|
||
possibly be faster due to less disk I/O.
|
||
|
||
* --compress-program comtrols which program to use for compressing
|
||
temporary files.
|
||
|
||
* --bar show progress as a progress bar compatible with zenity.
|
||
|
||
* --resume can now be used with --result: Jobs already run will be
|
||
skipped.
|
||
|
||
* --transfer and --basefile support paths relative to the --workdir by
|
||
inserting /./ into the path.
|
||
|
||
* GNU Parallel was cited in: 'fastphylo: Fast tools for phylogenetics'
|
||
http://www.biomedcentral.com/1471-2105/14/334/abstract
|
||
|
||
* Using GNU parallel
|
||
http://davetang.org/muse/2013/11/18/using-gnu-parallel/
|
||
|
||
* Techlux - GNU - Parallel (German)
|
||
https://techlux.de/blog/2013/11/07/gnu-parallel/
|
||
|
||
* awk, sed, bzip2, grep, wc на всех ядрах
|
||
http://vk.com/page-30666517_45528467
|
||
|
||
* 如何利用多核CPU來加速你的Linux命令 — awk, sed, bzip2, grep, wc等
|
||
http://www.hksilicon.com/kb/articles/290543/CPULinuxawk-sed-bzip2-grep-wc
|
||
|
||
* GNU Parallel (Japanese)
|
||
http://jarp.does.notwork.org/diary/201311b.html#20131117
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20131022
|
||
|
||
* --transfer files with /./ in the path will copy the files relative
|
||
to the --workdir.
|
||
|
||
* The maximal command length is now cached in a file halfing the
|
||
startup time.
|
||
|
||
* GNU Parallel was cited in: Investigating speaker gender using rhythm
|
||
metrics in Arabic dialects
|
||
http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6602389
|
||
|
||
* GNU Parallel was cited in: Tiedon erist ̈minen ja visualisointi a
|
||
lastensuojelun asiakaskertomuksista
|
||
https://tampub.uta.fi/handle/10024/84978
|
||
|
||
* Some Additional Useful Bioinformatics Software
|
||
http://nix-bio.blogspot.dk/2013/10/additional-software-for-bioinformatics.html
|
||
|
||
* GNU Parallel Example Screen Cast (bil to Geotiff conversion)
|
||
http://www.youtube.com/watch?v=PpF27eC7Mys
|
||
|
||
* Using GNU Parallel to roll-your-own Map Reduce!
|
||
http://www.rankfocus.com/hello-world/
|
||
|
||
* Use multiple CPU Cores with your Linux commands
|
||
http://www.rankfocus.com/use-cpu-cores-linux-commands/
|
||
|
||
* Using GNU Parallel at HPC @ Uni.lu
|
||
https://hpc.uni.lu/users/use_cases/
|
||
|
||
* Scaling up with parallelization
|
||
https://www.msi.umn.edu/sites/default/files/AdvPython_1.pdf
|
||
|
||
* How to teach yourself to be a technical tester
|
||
http://infiniteundo.com/post/62421363463/qa-toc
|
||
|
||
* Faster Rasters For All
|
||
http://2013.foss4g.org/conf/programme/presentations/52/
|
||
|
||
* Optimizing translated file downloads
|
||
http://www.smartling.com/blog/2013/05/20/optimizing-translated-file-downloads/
|
||
|
||
* EMC NetWorker parallel saveset cloning with nsrclone and GNU parallel
|
||
http://www.beebotech.com.au/2013/10/emc-networker-parallel-saveset-cloning-with-nsrclone-and-gnu-parallel/
|
||
|
||
* Best Practices for Amazon EMR
|
||
http://media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
|
||
|
||
* Computing checksums for backup
|
||
https://identi.ca/evan/note/6yf1GzAARtyBhj__xzMvAg
|
||
|
||
* Un exemplu de utilizare a programului GNU parallel
|
||
http://vundicind.blogspot.dk/2013/10/exemplu-utilizare-gnu-parallel.html
|
||
|
||
* 平行化你的工作
|
||
http://www.slideshare.net/drakeguan/part1-23705978
|
||
|
||
* なんか気持ちよかです Gnu Parallel
|
||
http://a3-lab.jpn.org/note/%E3%81%AA%E3%82%93%E3%81%8B%E6%B0%97%E6%8C%81%E3%81%A1%E3%82%88%E3%81%8B%E3%81%A7%E3%81%99-gnu-parallel
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20130922
|
||
|
||
* PDF-files of documentation is now included.
|
||
|
||
* Cloning at warp speed 100 VMs in 1 minute using one command line
|
||
http://www.beebotech.com.au/tag/command-line/
|
||
|
||
* Calcul Quebec's introduction to GNU Parallel
|
||
https://wiki.calculquebec.ca/w/GNU_parallel
|
||
|
||
* Brincando com o GNU parallel
|
||
http://blog.tadeucruz.com/2013/09/brincando-com-o-gnu-parallel/
|
||
|
||
* GNU Parallelで並列処理を行う
|
||
http://qiita.com/PENGUINANA_/items/af27a833e835fe17f09b
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20130822
|
||
|
||
* A tutorial showing much of GNU Parallel's functionality. Spend an
|
||
hour walking through the tutorial. Your commandline will love you
|
||
for it. man parallel_tutorial
|
||
|
||
* --line-buffer will buffer output on line basis. --group keeps the
|
||
output together for a whole job. --ungroup allows output to mixup
|
||
with half a line coming from one job and half a line coming from
|
||
another job. --line-buffer fits between these two; it prints a full
|
||
line, but will allow for mixing lines of different jobs.
|
||
|
||
* --record-env records all variables and functions set. Useful to
|
||
record the normal environment before using --env _.
|
||
|
||
* --env _ exports all functions and variables to the remote server
|
||
except for the ones recorded.
|
||
|
||
* New signing key. Due to recommendations from NIST
|
||
http://www.keylength.com/en/4/ the signing key was changed from
|
||
1024D/ID:FFFFFFF1 to 9888R/ID:88888888.
|
||
|
||
* Agalma: an automated phylogenomics workflow
|
||
http://arxiv.org/pdf/1307.6432
|
||
|
||
* Job ad asking for GNU Parallel expertise
|
||
http://seattle.craigslist.org/est/sof/4006079352.html
|
||
|
||
* Transient Beowulf Clustering with GNU Parallel and SSHfs
|
||
http://www.reddit.com/r/linux/comments/1ka8mn/transient_beowulf_clustering_with_gnu_parallel/
|
||
|
||
* Aligning to unique regions
|
||
http://davetang.org/muse/2013/07/22/aligning-to-unique-regions/
|
||
|
||
* Top 10 scripting tricks for basic bioinformatics
|
||
http://students.washington.edu/bowmanjs/wordpress/?p=873
|
||
|
||
* Using GNU Parallel to speed up and simplify data analyzes
|
||
http://www.sergeymarkov.com/blog/2013/07/using-gnu-parallel-to-speed-up-and-simplify-data-analyzes/
|
||
|
||
* Compression of files in parallel using GNU parallel
|
||
http://codextechnicanum.blogspot.dk/2013/07/compression-of-files-in-parallel-using.html
|
||
|
||
* Using GNU Parallel with Amazon
|
||
media.amazonwebservices.com/AWS_Amazon_EMR_Best_Practices.pdf
|
||
|
||
* Some useful comments on GNU Parallel
|
||
https://news.ycombinator.com/item?id=6209767
|
||
|
||
* Using GNU Parallel to count reads mapping to genes for multiple BAMs
|
||
http://drduanehassane.com/blog/sequencing-resources
|
||
|
||
* TimeMachineっぽいバックアップスクリプト
|
||
http://rio.tc/2013/07/timemachine-1.html
|
||
|
||
* GNU ParallelでAndroid NDKの全バージョンを一括ダウンロード
|
||
http://qiita.com/mazgi/items/b10bf0ff3da2045d19ab
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20130722
|
||
|
||
* --round-robin with --pipe will write all blocks to already running
|
||
jobs.
|
||
|
||
* --env can now transfer Bash function for remote execution. That is
|
||
pretty cool!
|
||
|
||
* GNU Parallel was used (unfortunately with improper citation) in:
|
||
Understanding the Impact of E-Commerce Software on the Adoption of Structured Data on the Web
|
||
http://link.springer.com/chapter/10.1007/978-3-642-38366-3_9#page-1
|
||
|
||
* GNU Parallel was used (unfortunately with improper citation) in:
|
||
CWI at TREC 2012, KBA track and Session Track
|
||
http://trec.nist.gov/pubs/trec21/papers/CWI.kba.session.final.pdf
|
||
|
||
* Mitigation of Adverse Effects Caused by Shock Wave Boundary Layer
|
||
Interactions through Optimal Wall Shaping.
|
||
http://arc.aiaa.org/doi/abs/10.2514/6.2013-2653
|
||
|
||
* Using GNU parallel to convert images.
|
||
http://www.brunokim.com.br/blog/?p=18
|
||
|
||
* A quick way to parallelize.
|
||
http://timotheepoisot.fr/2013/07/08/parallel/
|
||
|
||
* GNU Parallel 20130522 ('Rana Plaza') 发布，并行作业执行.
|
||
http://www.open-open.com/news/view/371301
|
||
|
||
* Quite a few bug fixes and man page updates.
|
||
|
||
|
||
20130622
|
||
|
||
* --xapply now recycles arguments if an input source has more
|
||
arguments than others.
|
||
|
||
* The sleep time between jobs is now both increased and decreased
|
||
exponentially.
|
||
|
||
* 10 seconds installation check the signature using GnuPG if GnuPG is
|
||
installed.
|
||
|
||
* Developer job asking for GNU Parallel expertise.
|
||
http://careers.stackoverflow.com/jobs/35562/developer-big-data-geo-and-web-climate-central
|
||
|
||
* A small utility program to run youtube-dl in parallel.
|
||
https://github.com/dlh/youtube-dl-parallel
|
||
|
||
* Parallelizing Freesurfer:
|
||
http://blog.cogneurostats.com/?p=148
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20130522
|
||
|
||
* --ctrlc is now default if --pipe is not used; thus making it
|
||
possible to kill remotely started jobs simply by pressing Ctrl-C.
|
||
|
||
* --timeout 200% now means kill jobs that take more than twice the
|
||
time of the median run time of a job.
|
||
|
||
* Jobs are now distributed round robin when having mulitiple
|
||
--sshlogin instead of filling up one --sshlogin at a time.
|
||
|
||
* niceload: darwin version of --io --mem --swap. Thanks to Anders F
|
||
Björklund.
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20130422
|
||
|
||
* 10 seconds installation: wget -O - pi.dk/3 | sh
|
||
|
||
* HPUX CPU/core detection. Thanks to Javier Tarradas.
|
||
|
||
* CPU detection for HURD, IRIX, SCO OpenServer and (old) HPUX.
|
||
|
||
* --ctrlc will send SIGINT to tasks running on remote computers and
|
||
thus killing them.
|
||
|
||
* --load now uses 'ps' to see immediately see the number of running
|
||
processes instead of 'uptime' thus making --load react much faster.
|
||
|
||
* Testing on Centos 3.9 and FreeBSD 7 revealed a lot of compability
|
||
bugs. Some of these required quite extensive changes making this
|
||
release beta quality.
|
||
|
||
* --retries works with --onall.
|
||
|
||
* The new --load computation now works on FreeBSD 7.
|
||
|
||
* --nice works under tcsh.
|
||
|
||
* GNU Parallel is officially supported in NetBSD.
|
||
http://ftp.netbsd.org/pub/pkgsrc/current/pkgsrc/parallel/parallel/README.html
|
||
|
||
* GNU Parallel is accepted for openSUSE.
|
||
http://software.opensuse.org/package/gnu_parallel
|
||
|
||
* GNU Parallel can be installed under Microsoft Windows (CygWin).
|
||
http://blogs.msdn.com/b/hpctrekker/archive/2013/03/30/preparing-and-uploading-datasets-for-hdinsight.aspx
|
||
|
||
* Excuses for not installing GNU Parallel.
|
||
http://oletange.blogspot.dk/2013/04/why-not-install-gnu-parallel.html
|
||
|
||
* Job advert that requires GNU Parallel competence.
|
||
http://versium.com/about/careers/
|
||
|
||
* Parallelizing Batch Jobs for Fun and Profit.
|
||
http://mikeseidle.com/tech/programming/2013/03/parallelizing-batch-jobs
|
||
|
||
* Processing Transcription Start Sites(TSS) for the entire Mouse genome.
|
||
http://qbrc.swmed.edu/2013/03/gnu-parallel-speeding-up-unix-commands-and-scripts/
|
||
|
||
* GNU parallel is used throughout Scrimer.
|
||
http://scrimer.readthedocs.org/en/latest/
|
||
|
||
* GNU Parallel helped making public documents searchable.
|
||
http://danpalmer.me/blog/articles/2013-04-06-unlocking-hillsborough.html
|
||
|
||
* Identifying big movie files (German).
|
||
http://blackappsolutions.wordpress.com/2013/03/23/wenn-der-plattenplatz-knapp-wird-filme-identifizieren-die-viel-platz-belegen/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20130222
|
||
|
||
* --resume works with --pipe.
|
||
|
||
* --resume-failed will go through --joblog, redo the failed jobs and
|
||
then continue like --resume.
|
||
|
||
* Negative positional arguments count from the end: {-1} means the
|
||
last argument, {-2} the second to last.
|
||
|
||
* NetBSD CPU detection.
|
||
|
||
* --blocksize increases exponentially if it smaller than a full
|
||
record.
|
||
|
||
* Processing n-line records (--pipe -L n) is now much faster.
|
||
|
||
* --tollef is obsoleted after discussion on the mailing list.
|
||
|
||
* GNU Parallel is the highest rated tool on:
|
||
http://www.biostars.org/show/tools/?sort=votes&since=all%20time
|
||
|
||
* GNU Parallel was loved during FSFE's #ilovefs campaign.
|
||
http://fsfe.org/news/2013/news-20130212-01.en.html
|
||
|
||
* Using GNU Parallel with s3cmd (Japanese).
|
||
http://blog.suz-lab.com/2013/02/s3cmd-gnu-paralells3.html
|
||
|
||
* Intro to GNU Parallel (Chinese).
|
||
http://guiquanz.github.com/2013/02/12/gnu-parallel-intro/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20130122
|
||
|
||
* --sshdelay Delay starting next ssh by secs seconds. GNU parallel
|
||
will pause secs seconds after starting each ssh. secs can be less
|
||
than 1 seconds.
|
||
|
||
* Official OpenBSD port:
|
||
http://ftp.openbsd.org/ports/sysutils/parallel/
|
||
|
||
* Official DragonFlyBSD package:
|
||
http://www.mirrorservice.org/sites/ftp.dragonflybsd.org/packages/amd64/DragonFly-3.0.0/stable/parallel/
|
||
|
||
* Post about niceload in Hungarian:
|
||
http://commandline.blog.hu/2013/01/02/niceload
|
||
|
||
* 自炊スキャンデータをKobo Gloに最適化
|
||
http://interstadial.wordpress.com/2013/01/20/
|
||
|
||
* GNU parallel+ssh で複数のリモートホストに複数のコマンドを実行させる
|
||
http://oshiire.to/archives/1686
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20121222
|
||
|
||
* --shebang-wrap makes is possible to parallelize scripts by putting
|
||
parallel in the shebang line (the first #! line in scripts).
|
||
|
||
* --delay puts in a delay after starting each job. Useful to avoid
|
||
raceconditions and thundering herd problems.
|
||
|
||
* --results now uses / as separator instead of TAB and thus creates
|
||
subdirs. Thanks to Drew Frank.
|
||
|
||
* parallel: OpenBSD CPU detection. Thanks to Michał Markowski.
|
||
|
||
* niceload --sensor allows for negative numbers to signify a lower
|
||
number means the limit is lower.
|
||
|
||
* niceload --prg suspend a named program that is already running.
|
||
|
||
* niceload multiple --pid suspend process ids that are already running.
|
||
|
||
* Convertir des images avec find et imagemagick
|
||
http://roger.b.over-blog.com/article-convertir-des-images-avec-find-et-imagemagick-113416637.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20121122
|
||
|
||
* niceload --sensor makes it possible to use a program to control if a
|
||
program should be suspended.
|
||
|
||
* GNU Parallel was part of the justification for Nordic Free Software
|
||
Award 2012
|
||
https://fsfe.org/news/2012/news-20121112-01.html
|
||
|
||
* Dateien schneller packen und konvertieren mit GNU parallel
|
||
http://www.linux-community.de/Archiv/Tipp-der-Woche/Dateien-schneller-packen-und-konvertieren-mit-GNU-parallel
|
||
|
||
* Processing images from Lunar Reconnaissance Orbiter Narrow Angle
|
||
Camera http://lunokhod.org/?p=774
|
||
|
||
* GNU Parallel is used in types2: Type and Hapax Accumulation Curves
|
||
http://www.cs.helsinki.fi/u/josuomel/types2/
|
||
|
||
* GNU Parallel used in: A Hybrid Factor Analysis and Probabilistic
|
||
PCA-based system for Dictionary Learning and Encoding for Robust
|
||
Speaker Recognition
|
||
http://www.superlectures.com/odyssey2012/lecture.php?id=8&lang=en
|
||
http://www.cse.iitm.ac.in/~mrsri/ppca.pdf
|
||
|
||
* Mapreduce avec parallel, cat et une redirection
|
||
http://datacratic.com/site/blog/mapreduce-avec-parallel-cat-et-une-redirection
|
||
|
||
* GNU Parallel for Large Batches of Small Jobs
|
||
https://support.scinet.utoronto.ca/wiki/images/7/7b/Tech-talk-gnu-parallel.pdf
|
||
|
||
* GNU Parallel used in black belt tip (8:50-10:12)
|
||
https://aws.amazon.com/apac/awspodcast/episode20/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20121022
|
||
|
||
* --results structures output files so they can be imported using
|
||
Pandas (http://pandas.pydata.org/). Useful when doing simulations to
|
||
select output from some arguments.
|
||
|
||
* Use --env to transfer environment variables through ssh to remote
|
||
machines.
|
||
|
||
* GNU Parallel is accepted for Ubuntu Quantal.
|
||
http://packages.ubuntu.com/quantal/parallel
|
||
|
||
* GNU Parallel was requested for OpenSUSE (go vote!)
|
||
https://features.opensuse.org/314461
|
||
|
||
* Kneth's Korner: Map/Reduce and GNU Parallel
|
||
http://kenneth.geisshirt.dk/2012/10/mapreduce-and-gnu-parallel.html
|
||
|
||
* Blog post in Japanese by Siguniang.
|
||
https://siguniang.wordpress.com/2012/09/09/notes-on-gnu-parallel-the-command-line-power-tool/
|
||
(Siguniang mentions the logo is called 'The Cafe Wall Illusion')
|
||
http://www.michaelbach.de/ot/ang_cafewall/index.html
|
||
|
||
* GNU Parallel, where have you been all my life?
|
||
http://ssdigit.nothingisreal.com/2012/09/gnu-parallel-where-have-you-been-all-my.html
|
||
|
||
* Reference-free ddRADseq analysis tools uses GNU Parallel.
|
||
https://github.com/brantp/rtd#readme
|
||
|
||
* When bash just isn’t quick enough.
|
||
https://soimasysadmin.wordpress.com/2012/08/15/gnu-parallel-when-bash-just-isnt-quick-enough/
|
||
|
||
* Using GNU Parallel to Package Multiple Jobs in a Single PBS Job.
|
||
http://www.nas.nasa.gov/hecc/support/kb/Using-GNU-Parallel-to-Package-Multiple-Jobs-in-a-Single-PBS-Job_303.html
|
||
|
||
* GNU Parallel Notes.
|
||
http://xed.ch/help/parallel.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20120822
|
||
|
||
* Due to a bugfix the main flow has changed. Making this release beta
|
||
quality.
|
||
|
||
* Parallel Proxy Scraper & Checker Tool
|
||
https://www.youtube.com/watch?v=iXCeR_XsP6o
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20120722
|
||
|
||
* GNU Parallel was presented at Chiang Mai Bar Camp
|
||
http://barcampchiangmai.org/
|
||
See write up here:
|
||
http://www.cnx-software.com/2012/07/02/use-gnu-parallel-to-speed-up-script-execution-on-multiple-cores-andor-machines/
|
||
|
||
* I don't always max out all my CPUs, but when I do, I do it with GNU
|
||
Parallel.
|
||
http://memegenerator.net/instance/22638454
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20120622
|
||
|
||
* '-L n --pipe' will use records of n lines. This is useful when
|
||
processing data that have fixed records with a fixed number of
|
||
lines (e.g. fastq).
|
||
|
||
* --filter-hosts will remove down hosts. For each remote host: check
|
||
that login through ssh works. If not: do not use this host.
|
||
Currently you can not put --filter-hosts in a profile, $PARALLEL,
|
||
/etc/parallel/config or similar. This is because GNU Parallel uses
|
||
GNU Parallel to compute this, so you will get an infinite loop. This
|
||
will likely be fixed in a later release.
|
||
|
||
* --pipe now uses fork() instead of busy wait. The performance should
|
||
be better on computers with >10 cores while remaining the same on
|
||
computers with few cores.
|
||
|
||
* GNU Parallel will be represented at Chiang Mai Bar Camp.
|
||
http://barcampchiangmai.org/
|
||
|
||
* Indexing Big Data on Amazon AWS: The Screencast
|
||
(Check out his T-shirt at 18:40-21:00).
|
||
http://www.opensourceconnections.com/2012/06/06/indexing-big-data-on-amazon-aws-screencast/
|
||
|
||
* biotoolbox uses GNU Parallel.
|
||
https://code.google.com/p/biotoolbox/wiki/Pod_novo_wrapper
|
||
|
||
* Spiceweasel uses GNU Parallel.
|
||
https://github.com/mattray/spiceweasel
|
||
|
||
* GNU Parallel part of The Administrators Challenge.
|
||
http://challenge.twistedrack.com/questions/qs3.php
|
||
|
||
* Finding Oldest Firefox Code using GNU Parallel.
|
||
http://gregoryszorc.com/blog/2012/06/18/finding-oldest-firefox-code/
|
||
|
||
* Bug fixes (quite a few for remote job running) and man page updates.
|
||
|
||
|
||
20120522
|
||
|
||
* Timings in --joblog now with milliseconds.
|
||
|
||
* Thesis using GNU Parallel (correctly cited; hooray!).
|
||
http://scholarworks.sjsu.edu/etd_projects/222/
|
||
|
||
* Package for AIX.
|
||
http://www.perzl.org/aix/index.php?n=Main.Parallel
|
||
|
||
* Prokka uses GNU Parallel.
|
||
http://bioinformatics.net.au/prokka-manual.html
|
||
|
||
* GNU Parallel was presented at MUUG.
|
||
http://muug.mb.ca/blog/meetings/2012/05/09/may-8th-2012-rtfm-gnu-parallel1/
|
||
|
||
* Blog post: Manipulating many or large files with GNU parallel.
|
||
http://compbiously.blogspot.com/2012/05/manipulating-many-or-large-files-with.html
|
||
|
||
* Blog post: Running commands in parallel using bash.
|
||
http://blog.michaelboman.org/2012/04/running-commands-in-parallel-using-bash.html
|
||
|
||
* Blog post in Hungarian.
|
||
http://commandline.blog.hu/2012/05/03/gnu_parallel
|
||
|
||
* Popularity of GNU Parallel in Debian explodes.
|
||
http://qa.debian.org/popcon-graph.php?packages=parallel
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20120422
|
||
|
||
* A race condition bug caused restructuring of a central piece of the
|
||
code. Thus this release of GNU Parallel should be considered beta
|
||
quality.
|
||
|
||
* sql --dbsize will now list sizes of all databases if given no
|
||
database.
|
||
|
||
* GNU Parallel is now in Debian Unstable.
|
||
apt-get install parallel
|
||
|
||
* Article: Computational and experimental analyses of
|
||
retrotransposon-associated minisatellite DNAs in the soybean genome.
|
||
http://www.biomedcentral.com/content/supplementary/1471-2105-13-s2-s13-s1.pdf
|
||
|
||
* Blog post: GNU parallel - the best thing since sliced bread.
|
||
https://arrayal.wordpress.com/2012/03/27/gnu-parallel-the-best-thing-since-sliced-bread/
|
||
|
||
* Blog post: GNU Parallel makes everything faster.
|
||
http://compbiously.blogspot.com/2012/03/gnu-parallel-makes-everything-faster.html
|
||
|
||
* Blog post (German): Howto: GNU parallel.
|
||
http://d24m.de/2012/04/05/howto-gnu-parallel/
|
||
|
||
* Blog post: Running in Parallel
|
||
http://interactivity.ifactory.com/2012/04/running-in-parallel/
|
||
|
||
* 20000 watched the first intro video.
|
||
http://pi.dk/1
|
||
|
||
* The first 5 have received their GNU Parallel merchandise
|
||
https://www.gnu.org/software/parallel/merchandise.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20120322
|
||
|
||
* Parallel Process Database Dumps.
|
||
http://blog.mattoates.co.uk/2012/02/parallel-process-database-dumps.html
|
||
|
||
* Using GNU Parallel to process images from Mars.
|
||
http://lunokhod.org/?p=468
|
||
|
||
* Using GNU Parallel with bzgrep.
|
||
http://filip.rembialkowski.net/did-you-know-gnu-parallel/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20120222
|
||
|
||
* --workdir . will use the current working dir. If the current working
|
||
dir is beneath your home dir, the value . is treated as the relative
|
||
path to your home dir. This means that if your home dir is different
|
||
on remote computers (e.g. if your login is different) the relative
|
||
path will still be relative to your home dir.
|
||
|
||
* A texinfo file is now generated from the POD file using pod2texi.
|
||
|
||
* The bioinformatics article "Fast large-scale clustering of protein
|
||
structures using Gauss integrals" mentions GNU Parallel. They forgot
|
||
to add the reference. Please remember --bibtex if you use GNU
|
||
Parallel in an article.
|
||
http://bioinformatics.oxfordjournals.org/content/28/4/510.short
|
||
|
||
* The first supporter received his merchandise. Did you order yours?
|
||
https://www.gnu.org/software/parallel/merchandise.html
|
||
|
||
* How to use GNU Parallel with samtools.
|
||
http://zvfak.blogspot.com/2012/02/samtools-in-parallel.html
|
||
|
||
* How to use GNU Parallel for vacuuming PostgreSQL tables.
|
||
http://blog.timmattison.com/archives/2012/01/24/mini-hack-parallel-vacuuming-in-postgresql/
|
||
|
||
* Converting e-books with Calibre and GNU Parallel.
|
||
http://www.linkhal.de/blog/2012/01/converting-massive-e-book-collections-with-calibre-and-gnu-parrallel/
|
||
|
||
* Using GNU Parallel for tailing logfiles from multiple servers.
|
||
http://silviud.blogspot.com/2012/02/shell-parallel-processing.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20120122
|
||
|
||
* --header : uses the first input line as column names and you can
|
||
then use {colname} as a replacement string in the command. This also
|
||
works with multiple :::'s.
|
||
|
||
* --header <regexp> matches a header as a regular expression and
|
||
repeats the header for each block with --pipe.
|
||
|
||
* --resume resumes from the last unfinished job. Useful if you stop
|
||
GNU Parallel and restart it later with the same arguments.
|
||
|
||
* niceload now propagates exit status correctly.
|
||
|
||
* Show your support for GNU Parallel. For a limited time you can get a
|
||
GNU Parallel T-shirt+mug+pen+100 postcards at 20 EUR. See
|
||
https://www.gnu.org/software/parallel/merchandise.html
|
||
|
||
* Options -g -B -T -U -W -Y are retired as warned 6 months ago.
|
||
|
||
* GNU Parallel referenced in article on Holographic Grid Cloud. Thanks
|
||
to Stefano Gallozzi. http://arxiv.org/pdf/1112.6128
|
||
|
||
* Article in IEEE Software on GNU Parallel. Thanks to Diomidis
|
||
Spinellis. http://www.spinellis.gr/blog/20110911/
|
||
|
||
* An article on Narwhal which uses GNU Parallel. They forgot to add
|
||
the reference. Please remember --bibtex if you use GNU Parallel in
|
||
an article.
|
||
http://bioinformatics.oxfordjournals.org/content/early/2011/11/08/bioinformatics.btr613.full.pdf
|
||
|
||
* Blog post on using GNU Parallel to speed up BLAST queries:
|
||
http://blog.mckuhn.de/2012/01/embarrassingly-parallel-blast-search.html
|
||
|
||
* Video showing Wake-on-LAN with GNU Parallel.
|
||
https://www.youtube.com/watch?v=0mB-yIyKFLQ
|
||
|
||
* Using GNU Parallel with Solr.
|
||
http://sujitpal.blogspot.com/2011/12/solr-report-generation-with-python.html
|
||
|
||
* First job ad including GNU Parallel:
|
||
http://seeker.dice.com/jobsearch/servlet/JobSearch?op=101&dockey=xml/7/6/76f858de083a094f74b1a5d3ba53ffc5@endecaindex
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20111222
|
||
|
||
* --timeout will now kill grandchildren.
|
||
|
||
* Interview in Hacker Public Radio.
|
||
http://hackerpublicradio.org/eps.php?id=0860
|
||
|
||
* Blog post in Chinese.
|
||
http://blog.sina.com.cn/s/blog_3f7652740100y0ju.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20111122
|
||
|
||
* GNU Parallel package for Fedora.
|
||
https://admin.fedoraproject.org/pkgdb/acls/name/parallel
|
||
|
||
* Using GNU Parallel with Mozilla cross referencing.
|
||
https://blog.mozilla.com/it/2011/11/15/mxr-improvements/
|
||
|
||
* Neat flash presentation of GNU Parallel.
|
||
http://prezi.com/0nq74b2elgtx/about-gnu-parallel/
|
||
|
||
* How to create tar files of dirs in parallel.
|
||
https://joneslee85.wordpress.com/2011/11/22/shell-tips-how-to-recursively-archive-many-folders/
|
||
|
||
* Article in Admin Network&Security by Ben Martin.
|
||
http://www.admin-magazine.com/HPC/Articles/GNU-Parallel
|
||
|
||
* Blog post in Polish.
|
||
http://blog.tiger.com.pl/2011/01/05/gnu-parallel/
|
||
|
||
* Blog post on using GNU Parallel of Mac OS X.
|
||
http://www.0xcb0.com/2011/10/19/running-parallel-bash-tasks-on-os-x/
|
||
|
||
* Blog post in English by researcher.
|
||
http://zandyware.wordpress.com/2011/10/15/gnu-parallell-make-best-use-of-your-multicore-computer/
|
||
|
||
* Blog entry in Chinese.
|
||
http://blog.csdn.net/tossense/article/details/6889026
|
||
|
||
* Blog entry in Japanese on managing many servers.
|
||
http://hiroakis.com/blog/2011/11/13/gnu-parallel/
|
||
|
||
* GNU Parallel is now part of ppbs.
|
||
http://physiology.med.cornell.edu/faculty/mason/lab/ppbs/introduction/introduction.html
|
||
|
||
* How to use GNU Parallel with MCX.
|
||
http://mcx.sourceforge.net/cgi-bin/index.cgi?MMC/Doc/MMCCluster
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20111022
|
||
|
||
* --tag prepends lines with the argument(s). If used with --(n)onall
|
||
the line will be prepended with the sshlogin instead.
|
||
|
||
* --shellquote does not run the command but quotes it using \'s.
|
||
Useful for making quoted composed commands.
|
||
|
||
* --profile can now be repeated merging multiple profiles.
|
||
|
||
* --bibtex now gives the BibTeX entry.
|
||
Thanks to Aleksandr Levchuk for testing.
|
||
|
||
* Makefile for simple .deb package.
|
||
cd packager/debian; make
|
||
|
||
* sql: --list-databases lists the databases.
|
||
|
||
* GNU Parallel officially in Fedora 16
|
||
http://www.spinics.net/lists/fedora-package-announce/msg67130.html
|
||
|
||
* Blog post on recompression FLAC audio.
|
||
http://blog.oxplot.com/2011/08/reflac-flac-cleanser.html
|
||
|
||
* The most complex use of ::: I have seen so far.
|
||
http://agentzlerich.blogspot.com/2011/09/following-up-on-previous-failures-ive.html
|
||
|
||
* Example of using GNU Parallel with sudo.
|
||
http://loopkid.net/articles/2011/10/07/recursive-chmod-and-chown-on-files
|
||
|
||
* Use wget and gnu parallel to download mp3s at rocket speed.
|
||
http://sdbrain.posterous.com/use-wget-and-gnu-parallel-to-download-mp3s-at
|
||
|
||
* First CV referring to GNU Parallel.
|
||
http://www.peopleperhour.com/freelancers/stephen_/internet_researcher_and_protocol_develop/140602
|
||
|
||
* Cartwright labs usage of GNU Parallel.
|
||
http://cartwrightlab.wikispaces.com/The+Most+Bang+for+Your+Buck
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20110822
|
||
|
||
* --timeout implemented so that slow commands can be killed
|
||
|
||
* CPU detection improved for Mac OSX. Thanks to Wayne E. Seguin.
|
||
|
||
* Example of a parallel webcrawler in the man page.
|
||
|
||
* Backup up PostgreSQL with GNU Parallel. Thanks to Stephane Wirtel.
|
||
http://wirtel.be/2011/07/15/rsync_parallel/
|
||
|
||
* Blog post in Japanese.
|
||
http://dminor11th.blogspot.com/2011/08/gnu-parallel.html
|
||
|
||
* Blog post about optimizing JPEGs. Thanks to Thomas Jost.
|
||
http://schnouki.net/2011/07/22/optimizing-jpeg-pictures/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20110722
|
||
|
||
* niceload: --hard will suspend a program if a limit is reached - as
|
||
opposed to just slowing the program down.
|
||
|
||
* niceload: --soft will slow the program down - as opposed to
|
||
suspending the program completely.
|
||
|
||
* niceload: --run-io will slow down a program if disk io goes above a
|
||
certain limit.
|
||
|
||
* niceload: --run-load will slow down a program if loadaverage goes
|
||
above a certain limit.
|
||
|
||
* niceload: --run-mem will slow down a program if free memory goes
|
||
below a certain limit.
|
||
|
||
* niceload: --run-noswap will slow down a program if the computer is
|
||
swapping.
|
||
|
||
* niceload: --start-io, --start-load, --start-mem, --start-noswap will
|
||
defer starting a program until the system is below the limit.
|
||
|
||
* --io, --load, --mem, and --noswap sets both --run-* and --start-*.
|
||
|
||
* niceload got a major rewrite and is now object oriented.
|
||
|
||
* GNU Parallel was presented at Nordic Perl Workshop 2011.
|
||
http://conferences.yapceurope.org/npw2011/talk/3416
|
||
|
||
* Blog post about zcat and GNU Parallel. Thanks to Dr. John.
|
||
http://drjohnstechtalk.com/blog/2011/06/gnu-parallel-really-helps-with-zcat/
|
||
|
||
* 2 blog posts in Japanese. Thanks to Negima.
|
||
http://d.hatena.ne.jp/negima1976/20110607/1307412660
|
||
http://d.hatena.ne.jp/negima1976/20110628/1309252494
|
||
|
||
* Blog post for bioinformatics. Thanks to Chris Miller.
|
||
http://chrisamiller.com/science/2010/05/26/use-parallel-for-easy-multi-processor-execution/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20110622
|
||
|
||
* --onall will run all the jobs on all the computers. This is useful
|
||
for systemadinistrators having multiple servers.
|
||
|
||
* --nonall runs like --onall but reads no arguments from stdin
|
||
(standard input), so is possible to do:
|
||
parallel --nonall -S computer1,computer2 uptime
|
||
|
||
* Context replace now works with multiple input sources:
|
||
parallel -X echo {1}-{2} ::: 1 2 3 ::: a b c
|
||
|
||
* --noswap do not start a job on a server that is swapping.
|
||
|
||
* Article: Parallel processing without Hadoop!
|
||
http://www.solutionhacker.com/parallel-processing-without-hadoop/
|
||
|
||
* Article in Linux Magazine (Spanish). Thanks to Ben Martin.
|
||
http://www.linux-magazine.es/issue/67/
|
||
|
||
* First blog post in Korean. Thanks to 민병국.
|
||
http://blog.daum.net/_blog/BlogTypeView.do?blogid=02RQ3&articleno=13380895&admin=#
|
||
|
||
* Blog post in Japanese. Thanks to Naoya Nakazawa.
|
||
http://www.sssg.org/blogs/naoya/archives/2003
|
||
|
||
* Blog post in English. Thanks to Dagon.
|
||
http://hekate.homeip.net/2011/05/29/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20110522
|
||
|
||
* Multiple ::: can be put on the command line and will be treated
|
||
similar to contents from multiple -a's.
|
||
|
||
* ::: and :::: can now be mixed on the command line. Use {1} .. {n} to
|
||
refer to inputs from the different input sources.
|
||
|
||
* --xapply is now needed to get xapply's behaviour of reading one line
|
||
from each of the input sources.
|
||
|
||
* Multiple input sources will cause all combinations of arguments from
|
||
the sources to be generated. E.g. 'parallel echo {1}+{2} ::: 1 2 :::
|
||
a b c' will print 1+a 1+b 1+c 2+a 2+b 2+c. This can often replace
|
||
nested loops.
|
||
|
||
* Implemented {//} for the input line with the basename removed (dirname).
|
||
|
||
* New video showing the new ::: and :::: input sources.
|
||
http://tinyogg.com/watch/iOdhU/ http://www.youtube.com/watch?v=fOX1EyHkQwc
|
||
|
||
* GNU Parallel now has a logo.
|
||
http://www.gnu.org/software/parallel/logo.png
|
||
|
||
* Article about GNU SQL in USENIX Magazine ;login: (print)
|
||
http://www.usenix.org/publications/login/2011-04/
|
||
|
||
* Using GNU Parallel with EC2. Thanks to Kevin Wu.
|
||
http://blog.kevinformatics.com/post/4970574713/interested-in-your-experience-using-gnu-parallel-in
|
||
|
||
* Review with idea for {..} and {...} in Japanese. Thanks to ichii386.
|
||
http://d.hatena.ne.jp/ichii386/20110426
|
||
|
||
* Upgrade GNU Parallel using Macports. Thanks to Phil Hollenback.
|
||
http://www.hollenback.net/index.php/MacportsParallel
|
||
|
||
* Robert from Echo One discusses using processes instead of threads:
|
||
http://rrees.wordpress.com/2011/04/25/many-cores-many-threads/
|
||
|
||
* How to run GNU Parallel on a SLURM cluster. Thanks to Kevin Stock.
|
||
http://www.kevinstock.org/2011/04/using-the-ri-cluster/
|
||
|
||
* Short article about using GNU Parallel with lame:
|
||
http://loopkid.net/articles/2011/04/30/accelerate-lame-mp3-conversion
|
||
|
||
* Using GNU Parallel to run tail -f in Japanese. Thanks to Clouder.
|
||
http://blog.clouder.jp/archives/001140.html
|
||
|
||
* BBC Research & Development uses GNU Parallel:
|
||
http://www.bbc.co.uk/blogs/researchanddevelopment/2010/11/prototyping-weeknotes-41-26112.shtml
|
||
|
||
* Short article about using GNU Parallel on RHEL. Thanks to Rishi Deshpande.
|
||
http://nuclear-imaging.info/site_content/2011/05/11/gnu-parallel/
|
||
|
||
* Using GNU Parallel for FLAC->MP3 conversion. Thanks to Derek Marcotte.
|
||
http://derek.chezmarcotte.ca/?p=286
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20110422
|
||
|
||
* {#} now works as an alias for $PARALLEL_PID.
|
||
|
||
* --eta now estimates way more accurately.
|
||
|
||
* CPU detection code for AIX thanks to Christian Netrwal.
|
||
|
||
* --joblog contains exitcode.
|
||
|
||
* Thanks to Ævar Arnfjörð Bjarmason for reading my code.
|
||
|
||
* GNU Parallel was presented at:
|
||
- LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
|
||
- OSAA.dk, Aarhus, 2011-04-12
|
||
|
||
* Blog entry in Japanese. Thanks to Riywo.
|
||
http://blog.riywo.com/2011/04/19/022802
|
||
|
||
* Example of how to use GNU Parallel on PBS clusters. Thanks to Andrew
|
||
J Dolgert: http://web0.tc.cornell.edu/wiki/index.php?title=Gnu_Parallel
|
||
|
||
* First example of using GNU Parallel in Hebrew. Thanks to omry.
|
||
http://nd.gd/jk
|
||
|
||
* Intro video got past 10000 hits.
|
||
http://www.youtube.com/watch?v=OpaiGYxkSuQ
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20110322
|
||
|
||
* --tollef to be switch compatible with Tollef's parallel. This will
|
||
cause -l to mean --load, and the argument separator will be --
|
||
instead of :::
|
||
|
||
* --gnu will force GNU Parallel to behave like GNU Parallel even if
|
||
--tollef is set.
|
||
|
||
* Site wide config file: /etc/parallel/config
|
||
|
||
This should solve the issue with some packagers renaming GNU
|
||
Parallel to gparallel to avoid the naming conflict.
|
||
|
||
By putting --tollef in the site wide config file you can deinstall
|
||
Tollef's parallel and install GNU Parallel instead without any
|
||
change for users or scripts. This is useful for packagers that
|
||
currently rename GNU Parallel or simply do not distribute GNU
|
||
Parallel because the command name conflicts with Tollef's parallel.
|
||
|
||
* -L 0 -n 0, and -N 0 implemented. They will read one argument,
|
||
but insert 0 arguments on the command line. Useful if you just want
|
||
to run the same command with the same arguments a number of times.
|
||
|
||
* GNU Parallel is now in Fink. Thanks to Jesse Alama.
|
||
http://pdb.finkproject.org/pdb/package.php/parallel
|
||
|
||
* Opscode Cookbook for Chef. Thanks to Joshua Timberman.
|
||
https://github.com/opscode/cookbooks/tree/master/gnu_parallel
|
||
|
||
* Man page examples translated into Japanese. Thanks to Koshigoe.
|
||
http://w.koshigoe.jp/study/?%5Bsystem%5D+GNU+parallel+%BB%C8%CD%D1%CE%E3#l13
|
||
|
||
* GNU Parallel will be presented at:
|
||
- LUGA, Augsburg, 2011-03-26, http://www.luga.de/Aktionen/LIT-2011/Programm
|
||
- OSAA.dk, Aarhus, 2011-04-12
|
||
|
||
* Video of presentation from FSCONS 2010-11-07. The presenter was
|
||
_really_ hoarse that day (Something to do with loads of alcohol the
|
||
night before). http://vimeo.com/20838834
|
||
|
||
* Review with examples in German. Thanks to M. Nieberg.
|
||
http://kenntwas.de/2011/linux/gnu-parallel/
|
||
|
||
* A review of the --pipe option in German. Thanks to Mathias Huber.
|
||
http://www.linux-magazin.de/NEWS/GNU-Parallel-20110205-stueckelt-Daten
|
||
|
||
* A small example of grepping maillogs. Thanks to François Maillet.
|
||
http://www.francoismaillet.com/blog/?p=399
|
||
|
||
* Using GNU Parallel instead of xargs. Thanks to James Cuff.
|
||
http://blog.jcuff.net/2011/02/on-train-ride-in.html
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20110205
|
||
|
||
* --pipe splits piped data into blocks. Each block is piped to a
|
||
program for processing. The piping and the programs will be run in
|
||
parallel. Useful if the data you want to process is data for a
|
||
program and not arguments.
|
||
|
||
* --blocksize sets the blocksize in bytes for --pipe. The blocksize is
|
||
approximate. It can deviate as much as the size of one record.
|
||
Default is 1M.
|
||
|
||
* --recstart sets the string matching the start of a
|
||
record. Default is "".
|
||
|
||
* --recend sets the string matching the end of a
|
||
record. Default is '\n'. To specify none use --recend "".
|
||
|
||
If both --recstart and --recend are set, the end of a record must be
|
||
followed immediately by a start of a record. This is useful if
|
||
either recend or recstart can occur in the middle of a record.
|
||
|
||
* --remove-rec-sep removes the string matched by --recstart and
|
||
--recend.
|
||
|
||
* --regexp will make GNU Parallel treat --recstart and --recend as
|
||
regular expressions.
|
||
|
||
* --output-as-files will put the output of the programs into files and
|
||
instead of giving the output GNU Parallel will output the name of
|
||
these files.
|
||
|
||
* -N if used with --pipe sets the number of records to read.
|
||
|
||
* New video showing --pipe at
|
||
http://www.youtube.com/watch?v=1ntxT-47VPA
|
||
|
||
* GNU Parallel was presented at FOSDEM.
|
||
|
||
* Article in USENIX Magazine ;login: (print)
|
||
http://www.usenix.org/publications/login/2011-02/
|
||
|
||
* GNU Parallel is now on ohloh.net. Thanks to Wim Muskee.
|
||
https://www.ohloh.net/p/gnu-parallel
|
||
|
||
* Advanced recursive example. Thanks to Ruarí Ødegaard.
|
||
http://my.opera.com/ruario/blog/2011/01/24/editing-debian-packages-more-fun-with-gnu
|
||
|
||
* Small example on using GNU Parallel through 0install (German).
|
||
http://forum.ubuntuusers.de/topic/gnu-parallel-mit-zero-install-kurzinfo-kein-wi/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20110122
|
||
|
||
* --joblog makes a simple log of completed jobs.
|
||
|
||
* -X now spreads arguments between job slots when reaching last
|
||
argument. Use -j1 to avoid this.
|
||
|
||
* People on the email list have voted -j+0 to be the new default
|
||
instead of -j9.
|
||
|
||
* First review in Polish. Thanks to Patryk Krawaczyński.
|
||
http://nfsec.pl/root/2458
|
||
|
||
* Review in Spanish (in print).
|
||
https://www.linux-magazine.es/issue/67/moreinfo.html
|
||
|
||
* Review in English. Thanks to Brian Gough.
|
||
http://blogs.fsfe.org/bjg/2011/01/gnu-parallel-a-map-operator-for-the-command-line/
|
||
|
||
* Review in French. Thanks to Denis Dordoigne.
|
||
http://linuxfr.org/2010/12/29/27715.html
|
||
|
||
* Review in Spanish.
|
||
http://gufete.net/index.php?entry=entry110116-200022
|
||
|
||
* Article with advanced recursive example. Thanks to Ruarí Ødegaard
|
||
http://my.opera.com/ruario/blog/2011/01/18/fun-with-gnu-parallel
|
||
|
||
* Use case for memcache.
|
||
http://www.dctrwatson.com/2010/12/how-to-dump-memcache-keyvalue-pairs-fast/
|
||
|
||
* Bug fixes and man page updates.
|
||
|
||
|
||
20101222
|
||
|
||
* GNU niceload is now part of GNU Parallel. GNU niceload slows down a
|
||
program if the load average is above a certain limit.
|
||
|
||
* Implemented --tmpdir to buffer standard output and standard error in
|
||
a different place.
|
||
|
||
* Implemented --load to wait until the load is below a limit before
|
||
starting another job on that computer.
|
||
|
||
* Implemented --nice set the niceness of jobs running both locally and
|
||
remotely.
|
||
|
||
* Implemented --dry-run to print the job without running it.
|
||
|
||
* Implemented --tty as the old default of assigning a tty to the first
|
||
job causes problems.
|
||
|
||
* Review with focus on clusters. Thanks to Taylor Gillespie
|
||
http://www.unixpronews.com/unixpronews-49-20101019GNUParallelSpeedUpProcessingWithMulticoresClusters.html
|
||
|
||
* Review with focus on protein similarity.
|
||
http://kevinformatics.tumblr.com/post/2142473893/cluster-like-computing-using-gnu-parallel
|
||
|
||
* Review in Spanish.
|
||
http://gr3p.com/2010/12/gnu-parallel-acelera-tus-scripts-en-linux
|
||
|
||
* Quite a few bug fixes and man page updates.
|
||
|
||
|
||
20101202
|
||
|
||
* Implemented {/} for the input line with the path removed (basename).
|
||
|
||
* Implemented {/.} for the input line with extension and path removed
|
||
(basename).
|
||
|
||
* Output from --progress is now sent to standard error instead of
|
||
standard output.
|
||
|
||
* --eta was broken and counted down from 0. Now fixed.
|
||
|
||
* Standard output and standard error are flushed after every job so if
|
||
standard output does not end with a newline it will still be grouped
|
||
with the rest of standard output.
|
||
|
||
* --command, -c, --file, and -f are now removed as options. They were
|
||
never used in practice.
|
||
|
||
* GetOptionsFromArray rewritten to work with old Perl libraries.
|
||
|
||
* The file COPYING now contains the GNU General Public License 3
|
||
|
||
* Major rewrite to make the code more object oriented and easier to
|
||
maintain in the future.
|
||
|
||
|
||
20101113
|
||
|
||
* Using -j myfile the number of jobs can be changed while GNU Parallel
|
||
is running simply by changing the content of myfile.
|
||
|
||
* Implemented --profile to use different .parallel/config for
|
||
different situations.
|
||
|
||
* Ugly newlines in $PARALLEL and .parallel/config are no longer
|
||
needed. Instead you have to use \ in front of special shell
|
||
characters.
|
||
|
||
* --workdir puts the files transferred to remote machines in a
|
||
specified directory.
|
||
|
||
* $PARALLEL_PID is set to the process id of GNU Parallel.
|
||
|
||
* $PARALLEL_SEQ is set to the sequence number of the job.
|
||
|
||
* -v now only shows the command to run. Use -v -v to show the
|
||
ssh/rsync wrapping.
|
||
|
||
* Slow spawning error is now only a warning.
|
||
|
||
* If stdin is a tty and input is read from stdin you now get a
|
||
warning.
|
||
|
||
* GNU sql: \n and \x0a in arguments is replaced with newline.
|
||
|
||
* Patch for Debian package and spelling mistakes. Thanks to Rogério
|
||
Brito <rbrito at ime dot usp dot br>
|
||
|
||
* Mac OS X Homebrew package. Thanks to Jonathan Palardy <jonathan dot
|
||
palardy at gmail dot com>
|
||
|
||
* FreeBSD port. Thanks to Chris Howey <howeyc at gmail dot com>
|
||
|
||
* Pardus package. Thanks to Fethican Coşkuner
|
||
<fethicanc at gmail dot com>
|
||
|
||
* First review in Chinese. Thanks to 曾義峰:
|
||
http://antbsd.twbbs.org/~ant/wordpress/?p=2876
|
||
|
||
* First review in print:
|
||
http://www.linux-magazine.com/Issues/2010 Nov 2010
|
||
|
||
* First review in Spanish:
|
||
http://www.muylinux.com/2010/10/18/gnu-parallel-computacion-paralela-a-golpe-de-comando
|
||
|
||
* First review in Dutch thanks to Koen Vervloesem <koen at vervloesem
|
||
dot eu>:
|
||
http://techworld.nl/technologie/33493/gebruik-al-je-processorkernen-met-gnu-parallel.html
|
||
|
||
* Blog review thanks to R. Tyler Croy <tyler at monkeypox dot org>:
|
||
http://unethicalblogger.com/posts/2010/11/gnuparallel_changed_my_life
|
||
|
||
* 5000 views of the intro video:
|
||
http://www.youtube.com/watch?v=OpaiGYxkSuQ
|
||
|
||
* As usual a bunch of bugfixes and more usage examples in the man
|
||
page.
|
||
|
||
* GNU Parallel was presented at FSCONS 2010-11-07:
|
||
http://www.fscons.org/fs/gnu-parallel Hopefully the
|
||
video will be online soon.
|
||
|
||
|
||
20100922
|
||
|
||
* See GNU Parallel live at FSCONS 2010-11-07:
|
||
http://www.fscons.org/fs/gnu-parallel
|
||
|
||
* Untested Debian and xUbuntu packages available through OpenSUSE
|
||
build service:
|
||
https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
|
||
|
||
* Using --retries a job will be retried on another computer if it
|
||
fails. This is useful if some jobs fail for no apparent reason (such
|
||
as network failure).
|
||
|
||
* BSD xargs -o (open /dev/tty) is now default for the job running in
|
||
foreground. Useful for interactive commands like:
|
||
ls | parallel -Xuj1 vi
|
||
|
||
* GNU sql now supports SQLite.
|
||
|
||
* Renamed .dburl.aliases to .sql/aliases and /etc/sql/aliases.
|
||
|
||
* GNU sql now support --list-tables
|
||
|
||
* Alias for DBURL can contain '?query' part with %-quoting.
|
||
|
||
|
||
20100906
|
||
|
||
* Using --shebang GNU Parallel can be used as the parser for a script.
|
||
E.g: #!/usr/bin/parallel --shebang traceroute (followed by lines of
|
||
hosts)
|
||
|
||
* First community generated bugfixes
|
||
|
||
* Alt Linux package of GNU Parallel. Thanks to Michael Shigorin <mike
|
||
at altlinux dot org>
|
||
|
||
* Sunfreeware package of GNU Parallel. Thanks to Steven M. Christensen
|
||
<sunfreeware at gmail.com>
|
||
|
||
* Untested CentOS, Fedora, Mandriva, RedHat, and SUSE packages
|
||
available through OpenSUSE build service:
|
||
https://build.opensuse.org/package/show?package=parallel&project=home%3Atange
|
||
|
||
* Review of GNU Parallel. Thanks to Andrew McFague amcfague at wgen dot net
|
||
http://www.andrew-mcfague.com/linux/utilities-linux/
|
||
commands-every-serious-nix-user-should-know/#parallel
|
||
|
||
* First 1000 views of the intro video
|
||
|
||
* sql - a small script to access sql bases from the command line which
|
||
is a handy companion to parallel --colsep
|
||
|
||
|
||
20100822
|
||
|
||
* Counting semaphore functionality: start a job in the background. If
|
||
N jobs are already running, wait for one to complete. Examples:
|
||
sem 'sleep 2; echo foo'; sem 'sleep 1; echo bar'; sem --wait
|
||
sem -j2 'sleep 2; echo foo'; sem -j2 'sleep 1; echo bar'; sem --wait
|
||
|
||
* With --colsep a table can be used as input. Example:
|
||
cat tab_sep_table | parallel --colsep '\t' echo col1 {1} col2 {2}
|
||
|
||
* --trim can remove white space around arguments.
|
||
|
||
* --sshloginfile '..' means use ~/.parallel/sshloginfile
|
||
|
||
* Zero install package. Thanks to Tim Cuthbertson <tim3d dot junk at
|
||
gmail dot com>
|
||
|
||
* OpenSUSE package. Thanks to Markus Ammer <mkmm at gmx-topmail dot
|
||
de>
|
||
|
||
* NixOS package. Thanks to Ludovic Courtès <ludo at gnu dot org>
|
||
|
||
* Web review http://oentend.blogspot.com/2010/08/gnu-parallel.html
|
||
Thanks to Pavel Nuzhdin <pnzhdin at gmail dot com>
|
||
|
||
* Web review http://psung.blogspot.com/2010/08/gnu-parallel.html
|
||
Thanks to Phil Sung <psung at alum dot mit dot edu>
|
||
|
||
|
||
20100722
|
||
|
||
* Arguments can now be given on the command line. Example:
|
||
parallel bzip2 ::: *.txt
|
||
|
||
* xapply like functionality. Example:
|
||
parallel diff {1} {2} :::: filelist1 filelist2
|
||
parallel diff {1} {2} ">"{1.}-{2.}.diff :::: filelist1 filelist2
|
||
|
||
* Arch Linux package. Thanks to Peter Simons <simons at cryp dot to>
|
||
|
||
* Mandriva package. Thanks to Sandro Cazzaniga <kharec at mandriva dot
|
||
org>
|
||
|
||
* -L -l -n -s now implies -X unless -m is set
|
||
|
||
|
||
20100620
|
||
|
||
* New video showing the new options.
|
||
http://www.youtube.com/watch?v=OpaiGYxkSuQ or at
|
||
http://tinyogg.com/watch/TORaR/ and http://tinyogg.com/watch/hfxKj/
|
||
|
||
* 100% options complete with xargs. All options for xargs can now be
|
||
used in GNU Parallel - even the more exotic.
|
||
|
||
* --basefile for transferring basedata. When running jobs on remote
|
||
computers --basefile will transfer files before the first jobs is
|
||
run. It can be used to transfer data that remains the same for each
|
||
job such as scripts or lookup tables.
|
||
|
||
* --progress shows progress. To see how many jobs is running on each
|
||
server use --progress. It can be turned on even after GNU Parallel
|
||
is started.
|
||
|
||
* --eta shows estimated time left in seconds.
|
||
|
||
* --halt-on-error stops if an error occurs. GNU Parallel will default
|
||
to run all jobs - even if some of them fail. With --halt-on-error
|
||
GNU Parallel can ignore errors, wait for the currently running jobs
|
||
to finish, or stop immediately when an error occurs.
|
||
|
||
|
||
20100601
|
||
|
||
* GNU Parallel now has support for running jobs on remote machines
|
||
|
||
* Intro video http://www.youtube.com/watch?v=LlXDtd_pRaY
|
||
http://openvideo.dailymotion.com/video/xdmqwz_gnu-parallel-script-processing-and_tech
|
||
|
||
|
||
20100424
|
||
|
||
* GNU Parallel is now official GNU software
|