mirror of
https://git.savannah.gnu.org/git/parallel.git
synced 2024-11-23 06:27:55 +00:00
553 lines
16 KiB
Bash
553 lines
16 KiB
Bash
#!/bin/bash
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# Simple jobs that never fails
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# Each should be taking 3-10s and be possible to run in parallel
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# I.e.: No race conditions, no logins
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par_tee_with_premature_close() {
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echo '--tee --pipe should send all data to all commands'
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echo 'even if a command closes stdin before reading everything'
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echo 'tee with --output-error=warn-nopipe support'
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seq 1000000 | parallel -k --tee --pipe ::: wc head tail 'sleep 1'
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echo 'tee without --output-error=warn-nopipe support'
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cat > tmp/tee <<-EOF
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#!/usr/bin/perl
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if(grep /output-error=warn-nopipe/, @ARGV) {
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exit(1);
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}
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exec "/usr/bin/tee", @ARGV;
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EOF
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chmod +x tmp/tee
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PATH=tmp:$PATH
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# This gives incomplete output due to:
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# * tee not supporting --output-error=warn-nopipe
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# * sleep closes stdin before EOF
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# Depending on tee it may provide partial output or no output
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seq 1000000 | parallel -k --tee --pipe ::: wc head tail 'sleep 1'
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echo
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}
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par_maxargs() {
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echo '### Test -n and --max-args: Max number of args per line (only with -X and -m)'
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(echo line 1;echo line 2;echo line 3) | parallel -k -n1 -m echo
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(echo line 1;echo line 1;echo line 2) | parallel -k -n2 -m echo
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(echo line 1;echo line 2;echo line 3) | parallel -k -n1 -X echo
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(echo line 1;echo line 1;echo line 2) | parallel -k -n2 -X echo
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(echo line 1;echo line 2;echo line 3) | parallel -k -n1 echo
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(echo line 1;echo line 1;echo line 2) | parallel -k -n2 echo
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(echo line 1;echo line 2;echo line 3) | parallel -k --max-args=1 -X echo
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(echo line 1;echo line 2;echo line 3) | parallel -k --max-args 1 -X echo
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(echo line 1;echo line 1;echo line 2) | parallel -k --max-args=2 -X echo
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(echo line 1;echo line 1;echo line 2) | parallel -k --max-args 2 -X echo
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(echo line 1;echo line 2;echo line 3) | parallel -k --max-args 1 echo
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(echo line 1;echo line 1;echo line 2) | parallel -k --max-args 2 echo
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}
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par_totaljob_repl() {
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echo '{##} bug #45841: Replacement string for total no of jobs'
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parallel -k --plus echo {##} ::: {a..j};
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parallel -k 'echo {= $::G++ > 3 and ($_=$Global::JobQueue->total_jobs());=}' ::: {1..10}
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parallel -k -N7 --plus echo {#} {##} ::: {1..14}
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parallel -k -N7 --plus echo {#} {##} ::: {1..15}
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parallel -k -S 8/: -X --plus echo {#} {##} ::: {1..15}
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}
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par_jobslot_repl() {
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echo 'bug #46232: {%} with --bar/--eta/--shuf or --halt xx% broken'
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parallel --bar -kj2 --delay 0.1 echo {%} ::: a b ::: c d e 2>/dev/null
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parallel --halt now,fail=10% -kj2 --delay 0.1 echo {%} ::: a b ::: c d e
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parallel --eta -kj2 --delay 0.1 echo {%} ::: a b ::: c d e 2>/dev/null
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parallel --shuf -kj2 --delay 0.1 echo {%} ::: a b ::: c d e 2>/dev/null
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echo 'bug #46231: {%} with --pipepart broken. Should give 1+2'
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seq 10000 > /tmp/num10000
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parallel -k --pipepart -ka /tmp/num10000 --block 10k -j2 --delay 0.05 echo {%}
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rm /tmp/num10000
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}
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par_shard() {
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echo '### --shard'
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# Each of the 5 lines should match:
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# ##### ##### ######
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seq 100000 | parallel --pipe --shard 1 -j5 wc |
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perl -pe 's/(.*\d{5,}){3}/OK/'
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# Data should be sharded to all processes
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shard_on_col() {
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col=$1
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seq 10 99 | shuf | perl -pe 's/(.)/$1\t/g' |
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parallel --pipe --shard $col -j2 --colsep "\t" sort -k$col |
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field $col | sort | uniq -c
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}
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shard_on_col 1
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shard_on_col 2
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shard_on_col_name() {
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colname=$1
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col=$2
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(echo AB; seq 10 99 | shuf) | perl -pe 's/(.)/$1\t/g' |
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parallel --header : --pipe --shard $colname -j2 --colsep "\t" sort -k$col |
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field $col | sort | uniq -c
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}
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shard_on_col_name A 1
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shard_on_col_name B 2
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shard_on_col_expr() {
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colexpr="$1"
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col=$2
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(seq 10 99 | shuf) | perl -pe 's/(.)/$1\t/g' |
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parallel --pipe --shard "$colexpr" -j2 --colsep "\t" "sort -k$col; echo c1 c2" |
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field $col | sort | uniq -c
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}
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shard_on_col_expr '1 $_%=3' 1
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shard_on_col_expr '2 $_%=3' 2
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shard_on_col_name_expr() {
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colexpr="$1"
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col=$2
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(echo AB; seq 10 99 | shuf) | perl -pe 's/(.)/$1\t/g' |
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parallel --header : --pipe --shard "$colexpr" -j2 --colsep "\t" "sort -k$col; echo c1 c2" |
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field $col | sort | uniq -c
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}
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shard_on_col_name_expr 'A $_%=3' 1
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shard_on_col_name_expr 'B $_%=3' 2
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echo '*** broken'
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# Shorthand for --pipe -j+0
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seq 100000 | parallel --shard 1 wc |
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perl -pe 's/(.*\d{5,}){3}/OK/'
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# Combine with arguments
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seq 100000 | parallel --shard 1 echo {}\;wc ::: {1..5} ::: a b |
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perl -pe 's/(.*\d{5,}){3}/OK/'
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}
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par_distribute_args_at_EOF() {
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echo '### Test distribute arguments at EOF to 2 jobslots'
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seq 1 92 | parallel -j2 -kX -s 100 echo
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echo '### Test distribute arguments at EOF to 5 jobslots'
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seq 1 92 | parallel -j5 -kX -s 100 echo
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echo '### Test distribute arguments at EOF to infinity jobslots'
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seq 1 92 | parallel -j0 -kX -s 100 echo 2>/dev/null
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echo '### Test -N is not broken by distribution - single line'
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seq 9 | parallel -N 10 echo
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echo '### Test -N is not broken by distribution - two lines'
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seq 19 | parallel -k -N 10 echo
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}
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par_test_X_with_multiple_source() {
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echo '### Test {} multiple times in different commands'
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seq 10 | parallel -v -Xj1 echo {} \; echo {}
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echo '### Test of -X {1}-{2} with multiple input sources'
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parallel -j1 -kX echo {1}-{2} ::: a ::: b
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parallel -j2 -kX echo {1}-{2} ::: a b ::: c d
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parallel -j2 -kX echo {1}-{2} ::: a b c ::: d e f
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parallel -j0 -kX echo {1}-{2} ::: a b c ::: d e f
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echo '### Test of -X {}-{.} with multiple input sources'
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parallel -j1 -kX echo {}-{.} ::: a ::: b
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parallel -j2 -kX echo {}-{.} ::: a b ::: c d
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parallel -j2 -kX echo {}-{.} ::: a b c ::: d e f
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parallel -j0 -kX echo {}-{.} ::: a b c ::: d e f
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}
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par_resume_failed_k() {
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echo '### bug #38299: --resume-failed -k'
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tmp=$(tempfile)
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parallel -k --resume-failed --joblog $tmp echo job{#} val {}\;exit {} ::: 0 1 2 3 0 1
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echo try 2. Gives failing - not 0
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parallel -k --resume-failed --joblog $tmp echo job{#} val {}\;exit {} ::: 0 1 2 3 0 1
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echo with exit 0
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parallel -k --resume-failed --joblog $tmp echo job{#} val {}\;exit 0 ::: 0 1 2 3 0 1
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echo try 2 again. Gives empty
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parallel -k --resume-failed --joblog $tmp echo job{#} val {}\;exit {} ::: 0 1 2 3 0 1
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rm $tmp
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}
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par_resume_k() {
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echo '### --resume -k'
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tmp=$(tempfile)
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parallel -k --resume --joblog $tmp echo job{}id\;exit {} ::: 0 1 2 3 0 5
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echo try 2 = nothing
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parallel -k --resume --joblog $tmp echo job{}id\;exit {} ::: 0 1 2 3 0 5
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echo two extra
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parallel -k --resume --joblog $tmp echo job{}id\;exit 0 ::: 0 1 2 3 0 5 6 7
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rm -f $tmp
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}
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par_slow_args_generation() {
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echo '### Test slow arguments generation - https://savannah.gnu.org/bugs/?32834'
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seq 1 3 | parallel -j1 "sleep 2; echo {}" | parallel -kj2 echo
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}
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par_kill_term() {
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echo '### Are children killed if GNU Parallel receives TERM? There should be no sleep at the end'
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parallel -q bash -c 'sleep 120 & pid=$!; wait $pid' ::: 1 &
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T=$!
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sleep 5
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pstree $$
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kill -TERM $T
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sleep 1
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pstree $$
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}
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par_kill_int_twice() {
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echo '### Are children killed if GNU Parallel receives INT twice? There should be no sleep at the end'
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parallel -q bash -c 'sleep 120 & pid=$!; wait $pid' ::: 1 &
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T=$!
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sleep 5
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pstree $$
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kill -INT $T
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sleep 1
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pstree $$
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}
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par_children_receive_sig() {
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echo '### Do children receive --termseq signals'
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show_signals() {
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perl -e 'for(keys %SIG) { $SIG{$_} = eval "sub { print STDERR \"Got $_\\n\"; }";} while(1){sleep 1}';
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}
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export -f show_signals
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echo | stdout parallel --termseq TERM,200,TERM,100,TERM,50,KILL,25 -u \
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--timeout 1s show_signals
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echo | stdout parallel --termseq INT,200,TERM,100,KILL,25 -u \
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--timeout 1s show_signals
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sleep 3
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}
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par_wrong_slot_rpl_resume() {
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echo '### bug #47644: Wrong slot number replacement when resuming'
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seq 0 20 |
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parallel -kj 4 --delay 0.2 --joblog /tmp/parallel-bug-47558 \
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'sleep 1; echo {%} {=$_==10 and exit =}'
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seq 0 20 |
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parallel -kj 4 --resume --delay 0.2 --joblog /tmp/parallel-bug-47558 \
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'sleep 1; echo {%} {=$_==110 and exit =}'
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}
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par_pipepart_block() {
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echo '### --pipepart --block -# (# < 0)'
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seq 1000 > /run/shm/parallel$$
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parallel -j2 -k --pipepart echo {#} :::: /run/shm/parallel$$
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parallel -j2 -k --block -1 --pipepart echo {#}-2 :::: /run/shm/parallel$$
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parallel -j2 -k --block -2 --pipepart echo {#}-4 :::: /run/shm/parallel$$
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parallel -j2 -k --block -10 --pipepart echo {#}-20 :::: /run/shm/parallel$$
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rm /run/shm/parallel$$
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}
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par_multiline_commands() {
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echo 'bug #50781: joblog format with multiline commands'
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rm -f /tmp/jl.$$
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parallel --jl /tmp/jl.$$ --timeout 2s 'sleep {}; echo {};
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echo finish {}' ::: 1 2 4
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parallel --jl /tmp/jl.$$ --timeout 5s --retry-failed 'sleep {}; echo {};
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echo finish {}' ::: 1 2 4
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rm -f /tmp/jl.$$
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}
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par_dryrun_timeout_ungroup() {
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echo 'bug #51039: --dry-run --timeout 1.4m -u breaks'
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seq 1000 | stdout parallel --dry-run --timeout 1.4m -u --jobs 10 echo | wc
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}
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par_sqlworker_hostname() {
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echo 'bug #50901: --sqlworker should use hostname in the joblog instead of :'
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MY=:mysqlunittest
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parallel --sqlmaster $MY/hostname echo ::: 1 2 3
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parallel -k --sqlworker $MY/hostname
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hostname=`hostname`
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sql $MY 'select host from hostname;' |
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perl -pe "s/$hostname/<hostname>/g"
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}
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par_sqlandworker_uninstalled_dbd() {
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echo 'bug #56096: dbi-csv no such column'
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sudo mv /usr/share/perl5/DBD/CSV.pm /usr/share/perl5/DBD/CSV.pm.gone
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parallel --sqlandworker csv:////%2Ftmp%2Flog.csv echo ::: must fail
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sudo cp /usr/share/perl5/DBD/CSV.pm.gone /usr/share/perl5/DBD/CSV.pm
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parallel --sqlandworker csv:////%2Ftmp%2Flog.csv echo ::: works
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}
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par_commandline_with_newline() {
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echo 'bug #51299: --retry-failed with command with newline'
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echo 'The format must remain the same'
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(
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parallel --jl - 'false "command
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with
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newlines"' ::: a b | sort
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echo resume
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parallel --resume --jl - 'false "command
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with
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newlines"' ::: a b c | sort
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echo resume-failed
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parallel --resume-failed --jl - 'false "command
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with
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newlines"' ::: a b c d | sort
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echo retry-failed
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parallel --retry-failed --jl - 'false "command
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with
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newlines"' ::: a b c d e | sort
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) | perl -pe 's/\0/<null>/g;s/\d+/./g'
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}
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par_delay_human_readable() {
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# Test that you can use d h m s in --delay
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parallel --delay 0.1s echo ::: a b c
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parallel --delay 0.01m echo ::: a b c
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}
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par_exitval_signal() {
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echo '### Test --joblog with exitval and Test --joblog with signal -- timing dependent'
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rm -f /tmp/parallel_sleep
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rm -f mysleep
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cp /bin/sleep mysleep
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chmod +x mysleep
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parallel --joblog /tmp/parallel_joblog_signal \
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'./mysleep {}' ::: 30 2>/dev/null &
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parallel --joblog /tmp/parallel_joblog_exitval \
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'echo foo >/tmp/parallel_sleep; ./mysleep {} && echo sleep was not killed=BAD' ::: 30 2>/dev/null &
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while [ ! -e /tmp/parallel_sleep ] ; do
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sleep 1
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done
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sleep 1
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killall -6 mysleep
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wait
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grep -q 134 /tmp/parallel_joblog_exitval && echo exitval=128+6 OK
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grep -q '[^0-9]6[^0-9]' /tmp/parallel_joblog_signal && echo signal OK
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rm -f /tmp/parallel_joblog_exitval /tmp/parallel_joblog_signal
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}
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par_do_not_export_PARALLEL_ENV() {
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echo '### Do not export $PARALLEL_ENV to children'
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doit() {
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echo Should be 0
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echo "$PARALLEL_ENV" | wc
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echo Should give 60k and not overflow
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PARALLEL_ENV="$PARALLEL_ENV" parallel echo '{=$_="\""x$_=}' ::: 60000 | wc
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}
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. `which env_parallel.bash`
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# Make PARALLEL_ENV as big as possible
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PARALLEL_ENV="a='$(seq 100000 | head -c $((139000-$(set|wc -c) )) )'"
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env_parallel doit ::: 1
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}
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par_nice() {
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echo 'Check that --nice works'
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# parallel-20160422 OK
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check_for_2_bzip2s() {
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perl -e '
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for(1..5) {
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# Try 5 times if the machine is slow starting bzip2
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sleep(1);
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@out = qx{ps -eo "%c %n" | grep 18 | grep bzip2};
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if($#out == 1) {
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# Should find 2 lines
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print @out;
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exit 0;
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}
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}
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print "failed\n@out";
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'
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}
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# wait for load < 8
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parallel --load 8 echo ::: load_10
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parallel -j0 --timeout 10 --nice 18 bzip2 '<' ::: /dev/zero /dev/zero &
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pid=$!
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check_for_2_bzip2s
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parallel --retries 10 '! kill -TERM' ::: $pid 2>/dev/null
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}
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par_test_diff_roundrobin_k() {
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echo '### test there is difference on -k'
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. $(which env_parallel.bash)
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mytest() {
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K=$1
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doit() {
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# Sleep random time ever 10k line
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# to mix up which process gets the next block
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perl -ne '$t++ % 10000 or select(undef, undef, undef, rand()/1000);print' |
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md5sum
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}
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export -f doit
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seq 1000000 |
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parallel --block 65K --pipe $K --roundrobin doit |
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sort
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}
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export -f mytest
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parset a,b,c mytest ::: -k -k ''
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# a == b and a != c or error
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if [ "$a" == "$b" ]; then
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if [ "$a" != "$c" ]; then
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echo OK
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else
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echo error a c
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fi
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else
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echo error a b
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fi
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}
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par_lb_mem_usage() {
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long_line() {
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perl -e 'print "x"x100_000_000'
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}
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export -f long_line
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memusage() {
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round=$1
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shift
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/usr/bin/time -v "$@" 2>&1 >/dev/null |
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perl -ne '/Maximum resident set size .kbytes.: (\d+)/ and print $1,"\n"' |
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perl -pe '$_ = int($_/'$round')."\n"'
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}
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# 1 line - RAM usage 1 x 100 MB
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memusage 100000 parallel --lb ::: long_line
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# 2 lines - RAM usage 1 x 100 MB
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memusage 100000 parallel --lb ::: 'long_line; echo; long_line'
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# 1 double length line - RAM usage 2 x 100 MB
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memusage 100000 parallel --lb ::: 'long_line; long_line'
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}
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par_groupby() {
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tsv() {
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printf "%s\t" a1 b1 C1; echo
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printf "%s\t" 2 2 2; echo
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printf "%s\t" 3 2 2; echo
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printf "%s\t" 3 3 2; echo
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printf "%s\t" 3 2 4; echo
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printf "%s\t" 3 2 2; echo
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printf "%s\t" 3 2 3; echo
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}
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export -f tsv
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ssv() {
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# space separated
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printf "%s\t" a1 b1 C1; echo
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printf "%s " 2 2 2; echo
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printf "%s \t" 3 2 2; echo
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printf "%s\t " 3 3 2; echo
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printf "%s " 3 2 4; echo
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printf "%s\t\t" 3 2 2; echo
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printf "%s\t \t" 3 2 3; echo
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}
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export -f ssv
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cssv() {
|
|
# , + space separated
|
|
printf "%s,\t" a1 b1 C1; echo
|
|
printf "%s ," 2 2 2; echo
|
|
printf "%s ,\t" 3 2 2; echo
|
|
printf "%s\t, " 3 3 2; echo
|
|
printf "%s,," 3 2 4; echo
|
|
printf "%s\t,,, " 3 2 2; echo
|
|
printf "%s\t" 3 2 3; echo
|
|
}
|
|
export -f cssv
|
|
|
|
csv() {
|
|
# , separated
|
|
printf "%s," a1 b1 C1; echo
|
|
printf "%s," 2 2 2; echo
|
|
printf "%s," 3 2 2; echo
|
|
printf "%s," 3 3 2; echo
|
|
printf "%s," 3 2 4; echo
|
|
printf "%s," 3 2 2; echo
|
|
printf "%s," 3 2 3; echo
|
|
}
|
|
export -f csv
|
|
|
|
tester() {
|
|
block="$1"
|
|
groupby="$2"
|
|
generator="$3"
|
|
colsep="$4"
|
|
echo "### test $generator | --colsep $colsep --groupby $groupby $block"
|
|
$generator |
|
|
parallel --pipe --colsep "$colsep" --groupby "$groupby" -k $block 'echo NewRec; cat'
|
|
}
|
|
export -f tester
|
|
parallel --tag -k tester \
|
|
::: -N1 '--block 20' \
|
|
::: '3 $_%=2' 3 's/^(.).*/$1/' C1 'C1 $_%=2' \
|
|
::: tsv ssv cssv csv \
|
|
:::+ '\t' '\s+' '[\s,]+' ','
|
|
|
|
# Test --colsep char: OK
|
|
# Test --colsep pattern: OK
|
|
# Test --colsep -N1: OK
|
|
# Test --colsep --block 20: OK
|
|
# Test --groupby colno: OK
|
|
# Test --groupby 'colno perl': OK
|
|
# Test --groupby colname: OK
|
|
# Test --groupby 'colname perl': OK
|
|
# Test space sep --colsep '\s': OK
|
|
# Test --colsep --header : (OK: --header : not needed)
|
|
}
|
|
|
|
par_groupby_pipepart() {
|
|
tsv() {
|
|
printf "%s\t" a1 b1 c1 d1 e1 f1; echo
|
|
seq 100000 999999 | perl -pe '$_=join"\t",split//' |
|
|
sort --parallel=8 --buffer-size=50% -rk3
|
|
}
|
|
export -f tsv
|
|
|
|
ssv() {
|
|
# space separated
|
|
tsv | perl -pe '@sep=("\t"," "); s/\t/$sep[rand(2)]/ge;'
|
|
}
|
|
export -f ssv
|
|
|
|
cssv() {
|
|
# , + space separated
|
|
tsv | perl -pe '@sep=("\t"," ",","); s/\t/$sep[rand(2)].$sep[rand(2)]/ge;'
|
|
}
|
|
export -f cssv
|
|
|
|
csv() {
|
|
# , separated
|
|
tsv | perl -pe 's/\t/,/g;'
|
|
}
|
|
export -f csv
|
|
|
|
tester() {
|
|
generator="$1"
|
|
colsep="$2"
|
|
groupby="$3"
|
|
tmp=`tempfile`
|
|
|
|
echo "### test $generator | --colsep $colsep --groupby $groupby"
|
|
$generator > $tmp
|
|
parallel --pipepart -a $tmp --colsep "$colsep" --groupby "$groupby" -k 'echo NewRec; wc'
|
|
}
|
|
export -f tester
|
|
parallel --tag -k tester \
|
|
::: tsv ssv cssv csv \
|
|
:::+ '\t' '\s+' '[\s,]+' ',' \
|
|
::: '3 $_%=2' 3 c1 'c1 $_%=2' 's/^(\d+[\t ,]+){2}(\d+).*/$2/'
|
|
}
|
|
|
|
export -f $(compgen -A function | grep par_)
|
|
compgen -A function | grep par_ | LC_ALL=C sort |
|
|
parallel -j6 --tag -k --joblog /tmp/jl-`basename $0` '{} 2>&1'
|