mirror of
https://git.savannah.gnu.org/git/parallel.git
synced 2024-11-25 07:27:55 +00:00
496 lines
14 KiB
Plaintext
496 lines
14 KiB
Plaintext
echo 'bug #41412: --timeout + --delay causes deadlock';
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bug #41412: --timeout + --delay causes deadlock
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seq 10 | parallel -j10 --timeout 1 --delay 0.3 echo;
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parallel -j3 --timeout 1 --delay 2 echo ::: 1 2 3;
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1
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2
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3
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parallel -j10 --timeout 2.2 --delay 3 "sleep {}; echo {}" ::: 1 2 7 8 9
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1
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2
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parallel: Warning: This job was killed because it timed out:
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parallel: Warning: sleep 7; echo 7
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parallel: Warning: This job was killed because it timed out:
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parallel: Warning: sleep 8; echo 8
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parallel: Warning: This job was killed because it timed out:
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parallel: Warning: sleep 9; echo 9
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echo '### Test --spreadstdin - more procs than args'; rm -f /tmp/parallel.ss.*; seq 1 5 | stdout $NICEPAR -j 10 --spreadstdin 'cat >/tmp/parallel.ss.$PARALLEL_SEQ' >/dev/null; cat /tmp/parallel.ss.*; rm -f /tmp/parallel.ss.*
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### Test --spreadstdin - more procs than args
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echo '### Test --spreadstdin - more args than procs'; rm -f /tmp/parallel.ss2.*; seq 1 10 | stdout $NICEPAR -j 5 --spreadstdin 'cat >/tmp/parallel.ss2.$PARALLEL_SEQ' >/dev/null; cat /tmp/parallel.ss2.*; rm -f /tmp/parallel.ss2.*
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### Test --spreadstdin - more args than procs
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nice nice seq 1 1000 | $NICEPAR -j1 --spreadstdin cat "|cat "|wc -c
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3893
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nice nice seq 1 10000 | $NICEPAR -j10 --spreadstdin cat "|cat "|wc -c
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48894
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nice nice seq 1 100000 | $NICEPAR -j1 --spreadstdin cat "|cat "|wc -c
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588895
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nice nice seq 1 1000000 | $NICEPAR -j10 --spreadstdin cat "|cat "|wc -c
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6888896
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seq 1 10 | $NICEPAR --recend "\n" -j1 --spreadstdin gzip -9 >/tmp/foo.gz; rm /tmp/foo.gz
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echo '### Test --spreadstdin - similar to the failing below'; nice seq 1 100000 | $NICEPAR --recend "\n" -j10 --spreadstdin gzip -9 >/tmp/foo2.gz; diff <(nice seq 1 100000) <(zcat /tmp/foo2.gz |sort -n); diff <(nice seq 1 100000|wc -c) <(zcat /tmp/foo2.gz |wc -c); rm /tmp/foo2.gz
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### Test --spreadstdin - similar to the failing below
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echo '### Test --spreadstdin - this failed during devel'; nice seq 1 1000000 | md5sum; nice seq 1 1000000 | $NICEPAR --recend "\n" -j10 --spreadstdin gzip -9 | zcat | sort -n | md5sum
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### Test --spreadstdin - this failed during devel
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8a7095c1c23bfadc311fe6b16d950582 -
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8a7095c1c23bfadc311fe6b16d950582 -
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echo '### Test --spreadstdin -k'; nice seq 1 1000000 | $NICEPAR -k --recend "\n" -j10 --spreadstdin gzip -9 | zcat | md5sum
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### Test --spreadstdin -k
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8a7095c1c23bfadc311fe6b16d950582 -
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echo '### Test --spreadstdin --files'; nice seq 1 1000000 | shuf | $NICEPAR --files --recend "\n" -j10 --spreadstdin sort -n | parallel -Xj1 sort -nm {} ";"rm {} | md5sum
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### Test --spreadstdin --files
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8a7095c1c23bfadc311fe6b16d950582 -
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echo '### Test --tag ::: a ::: b'; stdout $NICEPAR -k --tag -j1 echo stderr-{.} ">&2;" echo stdout-{} ::: a ::: b
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### Test --tag ::: a ::: b
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a b stdout-a b
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a b stderr-a b
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echo '### Test --tag ::: a b'; stdout $NICEPAR -k --tag -j1 echo stderr-{.} ">&2;" echo stdout-{} ::: a b
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### Test --tag ::: a b
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a stdout-a
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a stderr-a
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b stdout-b
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b stderr-b
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echo '### Test --tag -X ::: a b'; stdout $NICEPAR -k --tag -X -j1 echo stderr-{.} ">&2;" echo stdout-{} ::: a b
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### Test --tag -X ::: a b
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a b stdout-a stdout-b
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a b stderr-a stderr-b
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echo '### Test bash redirection <()';
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### Test bash redirection <()
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$NICEPAR 'cat <(echo {}); echo b' ::: a
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a
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b
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echo '### Test bug https://savannah.gnu.org/bugs/index.php?33352'
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### Test bug https://savannah.gnu.org/bugs/index.php?33352
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# produce input slowly to parallel so that it will reap a process
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# while blocking in read()
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# Having found the solution it is suddenly very easy to reproduce the
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# problem - even on other hardware:
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#
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# perl -e '@x=1 .. 17000; for(1..30) { print "@x\n"}' | pv -qL 200000
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# |parallel -j2 --pipe --keeporder --block 150000 cat | md5sum
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#
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# This gives different md5sums for each run.
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#
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# The problem is that read(STDIN) is being interrupted by a dead
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# child. The chance of this happening is very small if there are few
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# children dying or read(STDIN) never has to wait for data.
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#
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# The test above forces data to arrive slowly (using pv) which causes
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# read(STDIN) to take a long time - thus being interrupted by a dead
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# child.
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echo "# md5sum - directly"
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# md5sum - directly
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nice perl -e '@x=1 .. 17000; for(1..100) { print "@x\n"}' | md5sum
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350eda13a37912d755c9d733d149bdaf -
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echo "# parallel | md5sum"
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# parallel | md5sum
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nice nice perl -e '@x=1 .. 17000; for(1..100) { print "@x\n"}' | pv -qL 1000000 | $PAR cat | md5sum
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350eda13a37912d755c9d733d149bdaf -
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echo "# --recend ''"
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# --recend ''
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nice nice perl -e '@x=1 .. 17000; for(1..100) { print "@x\n"}' | pv -qL 1000000 | $PAR --recend '' cat | md5sum
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350eda13a37912d755c9d733d149bdaf -
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echo "# --recend '' --files"
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# --recend '' --files
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nice nice perl -e '@x=1 .. 17000; for(1..100) { print "@x\n"}' | pv -qL 1000000 | $PAR --recend '' --files cat | parallel -Xj1 cat {} ';' rm {} | md5sum
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350eda13a37912d755c9d733d149bdaf -
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echo "# --recend '' --files --tmpdir"
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# --recend '' --files --tmpdir
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nice nice perl -e '@x=1 .. 17000; for(1..100) { print "@x\n"}' | pv -qL 1000000 | $PAR --recend '' --files --tmpdir /dev/shm cat | parallel -Xj1 cat {} ';' rm {} | md5sum
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350eda13a37912d755c9d733d149bdaf -
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echo "# --recend '' --files --halt-on-error"
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# --recend '' --files --halt-on-error
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nice nice perl -e '@x=1 .. 17000; for(1..100) { print "@x\n"}' | pv -qL 1000000 | $PAR --recend '' --files --halt-on-error 2 cat | parallel -Xj1 cat {} ';' rm {} | md5sum
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350eda13a37912d755c9d733d149bdaf -
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echo '### Test of -j filename - non-existent file'; nice stdout parallel -j no_such_file echo ::: 1
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### Test of -j filename - non-existent file
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parallel: Error: Parsing of --jobs/-j/--max-procs/-P failed.
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Usage:
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parallel [options] [command [arguments]] < list_of_arguments
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parallel [options] [command [arguments]] (::: arguments|:::: argfile(s))...
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cat ... | parallel --pipe [options] [command [arguments]]
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-j n Run n jobs in parallel
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-k Keep same order
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-X Multiple arguments with context replace
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--colsep regexp Split input on regexp for positional replacements
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{} {.} {/} {/.} {#} {%} {= perl code =} Replacement strings
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{3} {3.} {3/} {3/.} {=3 perl code =} Positional replacement strings
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With --plus: {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..} =
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{+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}
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-S sshlogin Example: foo@server.example.com
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--slf .. Use ~/.parallel/sshloginfile as the list of sshlogins
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--trc {}.bar Shorthand for --transfer --return {}.bar --cleanup
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--onall Run the given command with argument on all sshlogins
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--nonall Run the given command with no arguments on all sshlogins
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--pipe Split stdin (standard input) to multiple jobs.
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--recend str Record end separator for --pipe.
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--recstart str Record start separator for --pipe.
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See 'man parallel' for details
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Academic tradition requires you to cite works you base your article on.
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If you use programs that use GNU Parallel to process data for an article in a
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scientific publication, please cite:
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O. Tange (2018): GNU Parallel 2018, Mar 2018, ISBN 9781387509881,
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DOI https://doi.org/10.5281/zenodo.1146014
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This helps funding further development; AND IT WON'T COST YOU A CENT.
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If you pay 10000 EUR you should feel free to use GNU Parallel without citing.
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echo '### Test of -j filename'; echo 3 >/tmp/jobs_to_run1; parallel -j /tmp/jobs_to_run1 -v sleep {} ::: 10 8 6 5 4; # Should give 6 8 10 5 4
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### Test of -j filename
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sleep 6
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sleep 8
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sleep 10
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sleep 5
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sleep 4
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echo '### Test ::::'
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### Test ::::
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echo '### Change --arg-file-sep'
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### Change --arg-file-sep
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$XAP --arg-file-sep :::: -k echo {1} {2} :::: <(seq 1 10) <(seq 5 15)
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1 15
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$XAP --arg-file-sep .--- -k echo {1} {2} .--- <(seq 1 10) <(seq 5 15)
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1 15
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$XAP --argfilesep :::: -k echo {1} {2} :::: <(seq 1 10) <(seq 5 15)
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1 15
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$XAP --argfilesep .--- -k echo {1} {2} .--- <(seq 1 10) <(seq 5 15)
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1 15
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echo '### Test xapply --max-replace-args'
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### Test xapply --max-replace-args
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seq 0 7 | $XAP -k --max-replace-args=3 echo {3} {2} {1}
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2 1 0
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5 4 3
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7 6
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echo '### Test -N'
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### Test -N
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seq 1 5 | $XAP -kN3 echo {1} {2} {3}
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1 2 3
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4 5
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echo '### Test -N with 0'
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### Test -N with 0
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seq 0 7 | $XAP -kN3 echo {1} {2} {3}
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0 1 2
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3 4 5
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6 7
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echo '### Test :::: on nonexistent'
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### Test :::: on nonexistent
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stdout $XAP -k echo {1} {2} {3} :::: nonexistent
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parallel: Error: Cannot open input file `nonexistent': No such file or directory.
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echo '### Test :::: two files'
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### Test :::: two files
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$XAP -k echo {1} {2} :::: <(seq 1 10) <(seq 5 15)
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10 14
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1 15
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echo '### Test -d, ::::'
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### Test -d, ::::
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$XAP -kd, 'echo a{1} {2}b' :::: <(echo 1,2,3,) <(echo 5,6,7,8)
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a1 5b
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a2 6b
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a3 7b
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a
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8
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b
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echo '### Test -d, :::: one file too much'
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### Test -d, :::: one file too much
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$XAP -kd, echo 'a{1}' '{2}b' :::: <(echo 1,2,3,) <(echo 5,6,7,8) <(echo 9,0)
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a1 5b
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a2 6b
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a3 7b
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a
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8
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b
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echo '### Bug: did not quote'
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### Bug: did not quote
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$XAP echo {1} {2} :::: <(echo '>') <(echo b)
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> b
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echo '### Quote test triplet 1'
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### Quote test triplet 1
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$XAP -kv :::: <(echo 'echo a'; echo 'echo b')
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echo a
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a
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echo b
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b
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$XAP -kv -a <(echo 'echo a'; echo 'echo b')
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echo a
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a
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echo b
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b
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(echo 'echo a'; echo 'echo b') | $XAP -kv
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echo a
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a
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echo b
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b
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echo '### Quote test triplet 2'
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### Quote test triplet 2
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$XAP -kv echo :::: <(echo 'echo a'; echo 'echo b')
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echo 'echo a'
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echo a
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echo 'echo b'
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echo b
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$XAP -kv -a <(echo 'echo a'; echo 'echo b') echo
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echo 'echo a'
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echo a
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echo 'echo b'
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echo b
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(echo 'echo a'; echo 'echo b') | $XAP -kv echo
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echo 'echo a'
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echo a
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echo 'echo b'
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echo b
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echo '### Quoting if there is a command and 2 arg files'
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### Quoting if there is a command and 2 arg files
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$XAP -kv echo :::: <(echo 'echo a') <(echo 'echo b')
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echo 'echo a' 'echo b'
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echo a echo b
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echo '### Quoting if there is a command and 2 arg files of uneven length'
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### Quoting if there is a command and 2 arg files of uneven length
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$XAP -kv echo :::: <(echo 'echo a';echo a1) <(echo 'echo b')
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echo 'echo a' 'echo b'
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echo a echo b
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echo a1 'echo b'
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a1 echo b
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echo '### Quoting if there is no command and 2 arg files'
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### Quoting if there is no command and 2 arg files
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$XAP -kv :::: <(echo 'echo a') <(echo 'echo b')
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echo a echo b
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a echo b
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echo '### Quoting if there is no command and 2 arg files of uneven length'
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### Quoting if there is no command and 2 arg files of uneven length
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$XAP -kv :::: <(echo 'echo a';echo echo a1) <(echo 'echo b')
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echo a echo b
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a echo b
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echo a1 echo b
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a1 echo b
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echo '### Test multiple -a'
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### Test multiple -a
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$XAP -kv -a <(echo a) -a <(echo b) echo {2} {1}
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echo b a
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b a
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$XAP -kv echo {2} {1} :::: <(echo a) <(echo b)
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echo b a
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b a
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echo '### Multiple -a: An unused file'
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### Multiple -a: An unused file
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$XAP -kv -a <(echo a) -a <(echo b) -a <(echo c) echo {2} {1}
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echo b a
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b a
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$XAP -kv echo {2} {1} :::: <(echo a) <(echo b) <(echo c)
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echo b a
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b a
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echo '### Multiple -a: nonexistent'
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### Multiple -a: nonexistent
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stdout $XAP -kv echo {2} {1} :::: nonexist nonexist2
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parallel: Error: Cannot open input file `nonexist': No such file or directory.
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stdout $XAP -kv -a nonexist -a nonexist2 echo {2} {1}
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parallel: Error: Cannot open input file `nonexist': No such file or directory.
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echo '### Test {#.}'
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### Test {#.}
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$XAP -kv -a <(echo a-noext) -a <(echo b-withext.extension) -a <(echo c-ext.gif) echo {3.} {2.} {1.}
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echo c-ext b-withext a-noext
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c-ext b-withext a-noext
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echo "### Tests that failed for OO-rewrite"
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### Tests that failed for OO-rewrite
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parallel -u --semaphore --id local9 seq 1 10 '|' pv -qL 20; sem --id local9 --wait; echo done
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done
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echo a | parallel echo {1}
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a
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echo "echo a" | parallel
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a
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nice parallel -j1 -I :: -X echo 'a::b::^c::[.}c' ::: 1
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a1b1^c1[.}c
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echo "### BUG: The length for -X is not close to max (131072)"
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### BUG: The length for -X is not close to max (131072)
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seq 1 4000 | nice parallel -k -X echo {.} aa {}{.} {}{}d{} {}dd{}d{.} |head -n 1 |wc
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1 12817 131016
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echo "### BUG: empty lines with --show-limit"
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### BUG: empty lines with --show-limit
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echo | $NICEPAR --show-limits
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Maximal size of command: 131049
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Maximal used size of command: 131057
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Execution of will continue now, and it will try to read its input
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and run commands; if this is not what you wanted to happen, please
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press CTRL-D or CTRL-C
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echo '### Test -N'
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### Test -N
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seq 1 5 | $NICEPAR -kN3 echo {1} {2} {3}
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1 2 3
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4 5
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echo '### Test --arg-file-sep with files of different lengths'
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### Test --arg-file-sep with files of different lengths
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$XAP --arg-file-sep :::: -k echo {1} {2} :::: <(seq 1 1) <(seq 3 4)
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1 3
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1 4
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echo '### Test respect -s'
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### Test respect -s
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$NICEPAR -kvm -IARG -s15 echo ARG ::: 1 22 333 4444 55555 666666 7777777 88888888 999999999
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echo 1 22 333
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1 22 333
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echo 4444
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4444
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echo 55555
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55555
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echo 666666
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666666
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echo 7777777
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7777777
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echo 88888888
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88888888
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echo 999999999
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999999999
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echo '### Test eof string after :::'
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### Test eof string after :::
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$NICEPAR -k -E ole echo ::: foo ole bar
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foo
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echo '### Test -C and --trim rl'
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### Test -C and --trim rl
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$NICEPAR -k -C %+ echo '"{1}_{3}_{2}_{4}"' ::: 'a% c %%b' 'a%c% b %d'
|
|
a_b_c_
|
|
a_b_c_d
|
|
echo '### Test empty input'
|
|
### Test empty input
|
|
</dev/null $NICEPAR -j +0 echo
|
|
echo '### Test -m'
|
|
### Test -m
|
|
seq 1 2 | $NICEPAR -k -m echo
|
|
1
|
|
2
|
|
echo '### Test :::'
|
|
### Test :::
|
|
$NICEPAR echo ::: 1
|
|
1
|
|
echo '### Test context_replace'
|
|
### Test context_replace
|
|
echo a | $NICEPAR -qX echo "'"{}"' "
|
|
'a'
|
|
echo '### Test -N2 {2}'
|
|
### Test -N2 {2}
|
|
seq 1 4 | $NICEPAR -kN2 echo arg1:{1} seq:'$'PARALLEL_SEQ arg2:{2}
|
|
arg1:1 seq:1 arg2:2
|
|
arg1:3 seq:2 arg2:4
|
|
echo '### Test -E (should only output foo ole)'
|
|
### Test -E (should only output foo ole)
|
|
(echo foo; echo '';echo 'ole ';echo bar;echo quux) | $NICEPAR -kr -L2 -E bar echo
|
|
foo ole
|
|
$NICEPAR -kr -L2 -E bar echo ::: foo '' 'ole ' bar quux
|
|
foo ole
|
|
echo '### Test -r (should only output foo ole bar\nquux)'
|
|
### Test -r (should only output foo ole bar\nquux)
|
|
$NICEPAR -kr -L2 echo ::: foo '' 'ole ' bar quux
|
|
foo ole bar
|
|
quux
|
|
echo '### Test of tab as colsep'
|
|
### Test of tab as colsep
|
|
printf 'def\tabc\njkl\tghi' | $NICEPAR -k --colsep '\t' echo {2} {1}
|
|
abc def
|
|
ghi jkl
|
|
$NICEPAR -k -a <(printf 'def\tabc\njkl\tghi') --colsep '\t' echo {2} {1}
|
|
abc def
|
|
ghi jkl
|
|
### Test of -j filename with file content changing (missing -k is correct)
|
|
sleep 3.3
|
|
sleep 1
|
|
sleep 1
|
|
sleep 1
|
|
sleep 1
|
|
sleep 1
|
|
sleep 1
|
|
sleep 1.5
|
|
sleep 1.5
|
|
sleep 1.5
|
|
sleep 1.5
|
|
sleep 1
|
|
sleep 1
|
|
sleep 1
|
|
sleep 1
|
|
sleep 1
|