parsort: Initial version.

This commit is contained in:
Ole Tange 2020-04-11 20:01:43 +02:00
parent e8f520f642
commit 39b4542bf2
2 changed files with 224 additions and 9 deletions

View file

@ -1,17 +1,18 @@
CMD = blink 2grep 2search burncpu duplicate-packets em encdir field forever \ CMD = blink 2grep 2search burncpu duplicate-packets em encdir field \
fxkill G gitnext gitundo goodpasswd histogram mtrr mirrorpdf \ forever fxkill G gitnext gitundo goodpasswd histogram mtrr \
neno off pdfman pidcmd plotpipe puniq ramusage rand rclean \ mirrorpdf neno off parsort pdfman pidcmd plotpipe puniq \
rina rn rrm seekmaniac shython sound-reload splitvideo stdout \ ramusage rand rclean rina rn rrm seekmaniac shython \
swapout T timestamp tracefile transpose upsidedown vid \ sound-reload splitvideo stdout swapout T timestamp tracefile \
w4it-for-port-open whitehash wifi-reload wssh ytv yyyymmdd transpose upsidedown vid w4it-for-port-open whitehash \
wifi-reload wssh ytv yyyymmdd
all: blink/blink.1 2search/2grep.1 2search/2search.1 \ all: blink/blink.1 2search/2grep.1 2search/2search.1 \
burncpu/burncpu.1 encdir/encdir.1 G/G.1 gitnext/gitnext.1 \ burncpu/burncpu.1 encdir/encdir.1 G/G.1 gitnext/gitnext.1 \
gitundo/gitundo.1 goodpasswd/goodpasswd.1 \ gitundo/gitundo.1 goodpasswd/goodpasswd.1 \
histogram/histogram.1 mirrorpdf/mirrorpdf.1 neno/neno.1 \ histogram/histogram.1 mirrorpdf/mirrorpdf.1 neno/neno.1 \
off/off.1 pdfman/pdfman.1 pidcmd/pidcmd.1 plotpipe/plotpipe.1 \ off/off.1 parsort/parsort.1 pdfman/pdfman.1 pidcmd/pidcmd.1 \
puniq/puniq.1 rand/rand.1 rina/rina.1 rn/rn.1 rrm/rrm.1 \ plotpipe/plotpipe.1 puniq/puniq.1 rand/rand.1 rina/rina.1 \
seekmaniac/seekmaniac.1 shython/shython.1 \ rn/rn.1 rrm/rrm.1 seekmaniac/seekmaniac.1 shython/shython.1 \
sound-reload/sound-reload.1 splitvideo/splitvideo.1 \ sound-reload/sound-reload.1 splitvideo/splitvideo.1 \
stdout/stdout.1 timestamp/timestamp.1 tracefile/tracefile.1 \ stdout/stdout.1 timestamp/timestamp.1 tracefile/tracefile.1 \
transpose/transpose.1 T/T.1 upsidedown/upsidedown.1 vid/vid.1 \ transpose/transpose.1 T/T.1 upsidedown/upsidedown.1 vid/vid.1 \

214
parsort/parsort Executable file
View file

@ -0,0 +1,214 @@
#!/usr/bin/perl
=pod
=head1 NAME
parsort - Sort in parallel
=head1 SYNOPSIS
B<parsort> I<options for sort>
=head1 DESCRIPTION
B<parsort> uses B<sort> to sort in parallel. It works just like
B<sort> but faster, if you have a multicore machine.
Hopefully these ideas will make it into GNU Sort in the future.
=head1 EXAMPLE
Sort files:
parsort *.txt > sorted.txt
Sort stdin (standard input) numerically:
cat numbers | parsort -n > sorted.txt
=head1 PERFORMANCE
B<parsort> is faster on files, because these can be read in parallel.
On a 48 core machine you should see a speedup of 3x over B<sort>.
=head1 AUTHOR
Copyright (C) 2020 Ole Tange,
http://ole.tange.dk and Free Software Foundation, Inc.
=head1 LICENSE
Copyright (C) 2012 Free Software Foundation, Inc.
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 3 of the License, or
at your option any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
=head1 DEPENDENCIES
B<parsort> uses B<sort>, B<bash>, B<parallel>, and B<mbuffer>.
=head1 SEE ALSO
B<sort>
=cut
use strict;
use Getopt::Long;
use POSIX qw(mkfifo);
Getopt::Long::Configure("bundling","require_order");
my @ARGV_before = @ARGV;
GetOptions(
"debug|D" => \$opt::D,
"version" => \$opt::version,
"verbose|v" => \$opt::verbose,
"b|ignore-leading-blanks" => \$opt::ignore_leading_blanks,
"d|dictionary-order" => \$opt::dictionary_order,
"f|ignore-case" => \$opt::ignore_case,
"g|general-numeric-sort" => \$opt::general_numeric_sort,
"i|ignore-nonprinting" => \$opt::ignore_nonprinting,
"M|month-sort" => \$opt::month_sort,
"h|human-numeric-sort" => \$opt::human_numeric_sort,
"n|numeric-sort" => \$opt::numeric_sort,
"N|numascii" => \$opt::numascii,
"r|reverse" => \$opt::reverse,
"R|random-sort" => \$opt::random_sort,
"sort=s" => \$opt::sort,
"V|version-sort" => \$opt::version_sort,
"k|key=s" => \@opt::key,
"t|field-separator=s" => \$opt::field_separator,
"z|zero-terminated" => \$opt::zero_terminated,
) || exit(255);
$Global::progname = ($0 =~ m:(^|/)([^/]+)$:)[1];
$Global::version = 20200411;
if($opt::version) { version(); exit 0; }
if($opt::zero_terminated) { $/ = "\0"; }
@Global::sortoptions = @ARGV_before[0..($#ARGV_before-$#ARGV-1)];
$ENV{'TMPDIR'} ||= "/tmp";
sub merge {
# Input:
# @cmd = commands to 'cat' (part of) a file
my @cmd = @_;
chomp(@cmd);
while($#cmd > 0) {
my @tmp;
while($#cmd >= 0) {
my $a = shift @cmd;
my $b = shift @cmd;
$a &&= "<($a)";
$b &&= "<($b)";
# Ignore errors from mbuffer - it gives errors when a pipe is closed
push @tmp, "sort -m @Global::sortoptions $a $b | mbuffer -v0 -q -m 30M;";
}
@cmd = @tmp;
}
return @cmd;
}
sub tmpname {
# Select a name that does not exist
# Do not create the file as it may be used for creating a socket (by tmux)
# Remember the name in $Global::unlink to avoid hitting the same name twice
my $name = shift;
my($tmpname);
if(not -w $ENV{'TMPDIR'}) {
if(not -e $ENV{'TMPDIR'}) {
::error("Tmpdir '$ENV{'TMPDIR'}' does not exist.","Try 'mkdir $ENV{'TMPDIR'}'");
} else {
::error("Tmpdir '$ENV{'TMPDIR'}' is not writable.","Try 'chmod +w $ENV{'TMPDIR'}'");
}
::wait_and_exit(255);
}
do {
$tmpname = $ENV{'TMPDIR'}."/".$name.
join"", map { (0..9,"a".."z","A".."Z")[rand(62)] } (1..5);
} while(-e $tmpname or $Global::unlink{$tmpname}++);
return $tmpname;
}
sub tmpfifo {
# Find an unused name and mkfifo on it
my $tmpfifo = tmpname("psort");
mkfifo($tmpfifo,0600);
return $tmpfifo;
}
sub sort_files {
my @files = @ARGV;
# Let GNU Parallel generate the commands to read parts of files
# The commands split at \n and there will be at least one for each CPU thread
open(my $par,"-|",qw(parallel --pipepart --block -1 --dryrun -vv sort),
@Global::sortoptions, '::::', @files) || die;
my @cmd = merge(<$par>);
close $par;
# The command uses <(...) so it is incompatible with /bin/sh
open(my $bash,"|-","bash") || die;
print $bash @cmd;
close $bash;
}
sub sort_stdin {
my $numthreads = `parallel --number-of-threads`;
my @fifos = map { tmpfifo() } 1..$numthreads;
map { mkfifo($_,0600) } @fifos;
# This trick removes the fifo as soon as it is connected in the other end
# (rm fifo; ...) < fifo
my @cmd = map { "(rm $_; sort @Global::sortoptions) < $_" } @fifos;
@cmd = merge(@cmd);
if(fork) {
} else {
exec(qw(parallel -j),$numthreads,
# 1M 30M = 43s
# 3M 30M = 59s
# 300k 30M = 40-45s
# 100k 30M = 47s
# 500k 30M = 44s
# 300k 10M = 41-45s
# 256k 10M = 44s
# 300k 3M = 42-45s
# 300k - = 47s
qw(--block 256k --pipe --roundrobin mbuffer -v0 -q -m 10M > {} :::),@fifos);
}
# The command uses <(...) so it is incompatible with /bin/sh
open(my $bash,"|-","bash") || die;
print $bash @cmd;
close $bash;
}
if(@ARGV) {
sort_files();
} else {
sort_stdin();
}
# Test
# -z
# OK: cat bigfile | parsort
# OK: parsort -k4n files*.txt
# OK: parsort files*.txt
# OK: parsort "file with space"